Homologs of Rv3414c from Mycobacterium tuberculosis H37Rv

Probable alternative RNA polymerase sigma-D factor SigD
SEED: RNA polymerase sigma-70 factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Mycobacterium tuberculosis H37Rv	Rv3414c		Probable alternative RNA polymerase sigma-D factor SigD	sig.	100	100
	Rhodopseudomonas palustris CGA009	TX73_009325		sigma-70 family RNA polymerase sigma factor	insig.	33	78
	Rhizobium sp. OAE497	ABIE40_RS19610		sigma-70 family RNA polymerase sigma factor	insig.	34	78
o	Paraburkholderia sabiae LMG 24235	QEN71_RS20845		sigma-70 family RNA polymerase sigma factor	insig.	31	82
o	Pseudomonas putida KT2440	PP_0994		putative RNA polymerase sigma factor	insig.	30	86
o	Pseudomonas stutzeri RCH2	Psest_0114		RNA polymerase sigma factor, sigma-70 family	insig.	30	83
	Pseudomonas stutzeri RCH2	Psest_3456		RNA polymerase sigma factor, sigma-70 family	insig.	31	75
	Azospirillum sp. SherDot2	MPMX19_04570		ECF RNA polymerase sigma factor SigF	insig.	32	78
o	Burkholderia phytofirmans PsJN	BPHYT_RS25560		RNA polymerase sigma factor	insig.	29	88
	Agrobacterium fabrum C58	Atu2268		ECF family sigma factor	insig.	37	59
	Kangiella aquimarina DSM 16071	B158DRAFT_0139		RNA polymerase sigma factor, sigma-70 family	insig.	28	80
	Herbaspirillum seropedicae SmR1	HSERO_RS16195		RNA polymerase sigma factor	insig.	31	83
o	Sinorhizobium meliloti 1021	SM_b20531		RNA polymerase sigma factor	insig.	31	80
o	Brevundimonas sp. GW460-12-10-14-LB2	A4249_RS01090		sigma-70 family RNA polymerase sigma factor	insig.	30	82
	Burkholderia phytofirmans PsJN	BPHYT_RS25505		RNA polymerase sigma factor	insig.	30	83
	Cupriavidus basilensis FW507-4G11	RR42_RS05810		RNA polymerase sigma factor	insig.	31	86
	Cupriavidus basilensis FW507-4G11	RR42_RS14080		RNA polymerase sigma factor RpoE	strong	30	72
	Sphingomonas koreensis DSMZ 15582	Ga0059261_2952		RNA polymerase sigma factor, sigma-70 family	strong	30	78
	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_14945		RNA polymerase subunit sigma-24	strong	26	73
	Caulobacter crescentus NA1000	CCNA_03362		ECF-family RNA polymerase sigma factor	strong	29	87
	Caulobacter crescentus NA1000 Δfur	CCNA_03362		ECF-family RNA polymerase sigma factor	cofit	29	87
	Rhizobium sp. OAE497	ABIE40_RS01010		sigma-70 family RNA polymerase sigma factor	insig.	31	78
o	Pantoea sp. MT58	IAI47_20240		sigma-70 family RNA polymerase sigma factor	insig.	29	83
	Paraburkholderia sabiae LMG 24235	QEN71_RS04575		RNA polymerase sigma factor RpoE	strong	28	82
	Burkholderia phytofirmans PsJN	BPHYT_RS14405		RNA polymerase sigma factor RpoE	no data	28	82
	Paraburkholderia graminis OAS925	ABIE53_003043		RNA polymerase sigma-70 factor (ECF subfamily)	strong	28	82
	Sphingomonas koreensis DSMZ 15582	Ga0059261_3636		RNA polymerase sigma factor, sigma-70 family	insig.	30	85
	Rhodanobacter sp. FW510-T8	OKGIIK_10685	rpoE	RNA polymerase sigma factor	cofit	26	96
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS15920		sigma-70 family RNA polymerase sigma factor	insig.	27	88
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_01786		RNA polymerase sigma-70 factor, ECF subfamily	insig.	33	83
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_04355		RNA polymerase, sigma-24 subunit, RpoE	no data	28	80
	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_0865		RNA polymerase sigma factor, sigma-70 family	insig.	27	87
	Magnetospirillum magneticum AMB-1	AMB_RS09285		RNA polymerase sigma factor	no data	30	71
	Ralstonia sp. UNC404CL21Col	ABZR87_RS03700		RNA polymerase sigma factor	insig.	30	86
	Shewanella loihica PV-4	Shew_1231		ECF subfamily RNA polymerase sigma-24 factor (RefSeq)	insig.	27	74
	Burkholderia phytofirmans PsJN	BPHYT_RS24975		RNA polymerase sigma24 factor	strong	31	66
	Acidovorax sp. GW101-3H11	Ac3H11_1827		RNA polymerase sigma-70 factor, ECF subfamily	insig.	29	91
	Castellaniella sp019104865 MT123	ABCV34_RS08355		RNA polymerase sigma factor RpoE	cofit	27	79
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_02732		RNA polymerase sigma-70 factor, ECF subfamily	insig.	31	66
	Shewanella loihica PV-4	Shew_1048		RNA polymerase sigma factor RpoE (RefSeq)	cofit	29	82
	Parabacteroides merdae CL09T00C40	HMPREF1078_RS13615		RNA polymerase sigma factor	insig.	28	49
	Herbaspirillum seropedicae SmR1	HSERO_RS13530		RNA polymerase subunit sigma-24	no data	32	75
	Bosea sp. OAE506	ABIE41_RS04095		sigma-70 family RNA polymerase sigma factor	strong	29	65
	Variovorax sp. OAS795	ABID97_RS16825		sigma-70 family RNA polymerase sigma factor	insig.	27	82
	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_3981		RNA polymerase sigma-70 factor, Bacteroides expansion family 1	insig.	27	68
	Shewanella sp. ANA-3	Shewana3_3032		RNA polymerase sigma factor RpoE (RefSeq)	no data	29	82
	Dechlorosoma suillum PS	Dsui_0621		RNA polymerase sigma factor, sigma-70 family	insig.	33	61
	Brevundimonas sp. GW460-12-10-14-LB2	A4249_RS03310		RNA polymerase sigma factor	insig.	29	77
	Ralstonia solanacearum IBSBF1503	RALBFv3_RS14445		RNA polymerase sigma factor RpoE	strong	29	79
	Ralstonia solanacearum GMI1000	RS_RS05225		RNA polymerase sigma factor RpoE	strong	29	79
	Ralstonia solanacearum PSI07	RPSI07_RS19015		RNA polymerase sigma factor RpoE	strong	29	79
	Ralstonia solanacearum UW163	UW163_RS11910		RNA polymerase sigma factor RpoE	insig.	29	79
	Mycobacterium tuberculosis H37Rv	Rv1221		Alternative RNA polymerase sigma factor SigE	insig.	28	66
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS22130		RNA polymerase sigma factor	insig.	28	62
	Shewanella oneidensis MR-1	SO1342	rpoE	RNA polymerase sigma-24 factor (NCBI ptt file)	no data	28	82
	Pseudomonas putida KT2440	PP_2088		RNA polymerase sigma factor SigX	strong	26	81
	Pseudomonas simiae WCS417	PS417_20990		RNA polymerase sigma factor SigX	no data	26	81
	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_2751		RNA polymerase sigma-70 factor, Bacteroides expansion family 1	insig.	23	86
	Ralstonia sp. UNC404CL21Col	ABZR87_RS10165		RNA polymerase sigma factor RpoE	strong	29	79
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS12095		RNA polymerase subunit sigma-70	insig.	28	79
	Pseudomonas fluorescens FW300-N2E3	AO353_00830		RNA polymerase subunit sigma	no data	25	81
	Rhodanobacter denitrificans MT42	LRK55_RS03585		RNA polymerase sigma factor	strong	42	23
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS03835		RNA polymerase sigma factor	strong	42	23
	Rhodanobacter sp. FW510-T8	OKGIIK_03490		hypothetical protein	insig.	30	79
	Pseudomonas fluorescens FW300-N2C3	AO356_02795		RNA polymerase subunit sigma	no data	28	81
	Pseudomonas simiae WCS417	PS417_00810		RNA polymerase sigma factor	insig.	27	84
	Pseudomonas fluorescens SBW25	PFLU_RS00840		RNA polymerase sigma factor	insig.	27	84
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS00840		RNA polymerase sigma factor	sig.	27	84
	Pseudomonas fluorescens SBW25	PFLU_RS22600		RNA polymerase sigma factor SigX	strong	26	81
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS22600		RNA polymerase sigma factor SigX	strong	26	81
	Paraburkholderia graminis OAS925	ABIE53_001573		RNA polymerase sigma-70 factor (ECF subfamily)	strong	33	44
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS09080		sigma-70 family RNA polymerase sigma factor	cofit	29	79
	Cupriavidus basilensis FW507-4G11	RR42_RS04015		RNA polymerase sigma factor	insig.	31	56
	Herbaspirillum seropedicae SmR1	HSERO_RS09625		RNA polymerase sigma factor RpoE	no data	30	68
	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.1512.1		RNA polymerase sigma-70 factor	insig.	27	61
	Pseudomonas syringae pv. syringae B728a	Psyr_2096		Sigma-70 region 2	no data	26	81
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_2096		Sigma-70 region 2	no data	26	81
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS00655		RNA polymerase subunit sigma-24	strong	22	81
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS01700		RNA polymerase sigma factor	insig.	22	61
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_04550		RNA polymerase, sigma-24 subunit, RpoE	strong	33	44
	Variovorax sp. OAS795	ABID97_RS08330		RNA polymerase sigma factor RpoE	strong	29	78
	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF365		RNA polymerase sigma factor	insig.	27	82
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS20645		RNA polymerase subunit sigma-70	insig.	24	79
	Synechococcus elongatus PCC 7942	Synpcc7942_1923	sigG	RNA polymerase sigma factor RpoE	strong	29	62
	Sinorhizobium meliloti 1021	SMc01506		RNA polymerase sigma factor	strong	26	79
	Kangiella aquimarina DSM 16071	B158DRAFT_0596		RNA polymerase sigma factor, sigma-70 family	insig.	22	81
	Paraburkholderia graminis OAS925	ABIE53_002003		RNA polymerase sigma factor (sigma-70 family)	sig.	30	58
	Vibrio cholerae E7946 ATCC 55056	CSW01_12485		RNA polymerase sigma factor RpoE	no data	28	86
	Pseudomonas simiae WCS417	PS417_09740		RNA polymerase subunit sigma-24	insig.	28	66
	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.4203.1		RNA polymerase sigma-54 factor RpoN	insig.	35	33
	Variovorax sp. SCN45	GFF3863		RNA polymerase sigma factor RpoE	insig.	30	78
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS01445		sigma-70 family RNA polymerase sigma factor	insig.	27	89
	Caulobacter crescentus NA1000	CCNA_01718		RNA polymerase ECF sigma factor	insig.	34	65
	Caulobacter crescentus NA1000 Δfur	CCNA_01718		RNA polymerase ECF sigma factor	cofit	34	65
	Brevundimonas sp. GW460-12-10-14-LB2	A4249_RS10790		RNA polymerase sigma factor	insig.	30	46
	Pseudomonas sp. S08-1	OH686_04120		RNA polymerase sigma factor RpoE	insig.	29	61
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_1738		RNA polymerase sigma-54 factor RpoN	insig.	28	83
	Cupriavidus basilensis FW507-4G11	RR42_RS05730		DNA-directed RNA polymerase sigma-70 factor	insig.	27	72
	Bosea sp. OAE506	ABIE41_RS11620		sigma-70 family RNA polymerase sigma factor	insig.	24	86
	Burkholderia phytofirmans PsJN	BPHYT_RS06540		RNA polymerase sigma70 factor	strong	31	41