Homologs of Rv3414c from Mycobacterium tuberculosis H37Rv

Probable alternative RNA polymerase sigma-D factor SigD
SEED: RNA polymerase sigma-70 factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

158 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Mycobacterium tuberculosis H37Rv Rv3414c Probable alternative RNA polymerase sigma-D factor SigD sig. 100 100
  Rhodopseudomonas palustris CGA009 TX73_009325 sigma-70 family RNA polymerase sigma factor insig. 33 78
  Rhizobium sp. OAE497 ABIE40_RS19610 sigma-70 family RNA polymerase sigma factor insig. 34 78
  Paraburkholderia sabiae LMG 24235 QEN71_RS20845 sigma-70 family RNA polymerase sigma factor insig. 31 82
  Pseudomonas putida KT2440 PP_0994 putative RNA polymerase sigma factor insig. 30 86
  Collimonas humicola GW821-FHT01A05 MPMX01_02578 ECF RNA polymerase sigma factor SigF insig. 30 84
  Pseudomonas stutzeri RCH2 Psest_0114 RNA polymerase sigma factor, sigma-70 family insig. 30 83
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 31 75
  Azospirillum sp. SherDot2 MPMX19_04570 ECF RNA polymerase sigma factor SigF insig. 32 78
  Sphingobium sp. HT1-2 GFF5259 hypothetical protein insig. 36 60
  Sphingobium sp. HT1-2 GFF4485 RNA polymerase sigma factor cnrH cofit 30 88
  Burkholderia phytofirmans PsJN BPHYT_RS25560 RNA polymerase sigma factor insig. 29 88
  Agrobacterium fabrum C58 Atu2268 ECF family sigma factor insig. 37 59
  Kangiella aquimarina DSM 16071 B158DRAFT_0139 RNA polymerase sigma factor, sigma-70 family insig. 28 80
  Xanthobacter sp. DMC5 GFF2972 ECF RNA polymerase sigma factor SigF no data 31 83
  Herbaspirillum seropedicae SmR1 HSERO_RS16195 RNA polymerase sigma factor insig. 31 83
  Sinorhizobium meliloti 1021 SM_b20531 RNA polymerase sigma factor insig. 31 80
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS01090 sigma-70 family RNA polymerase sigma factor insig. 30 82
  Burkholderia phytofirmans PsJN BPHYT_RS25505 RNA polymerase sigma factor insig. 30 83
  Cupriavidus basilensis FW507-4G11 RR42_RS05810 RNA polymerase sigma factor insig. 31 86
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 30 72
  Xanthobacter sp. DMC5 GFF1206 ECF RNA polymerase sigma factor SigF insig. 29 82
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2952 RNA polymerase sigma factor, sigma-70 family strong 30 78
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_14945 RNA polymerase subunit sigma-24 strong 26 73
  Collimonas humicola GW821-FHT01A05 MPMX01_01551 RNA polymerase sigma-H factor no data 29 87
  Caulobacter crescentus NA1000 CCNA_03362 ECF-family RNA polymerase sigma factor strong 29 87
  Caulobacter crescentus NA1000 Δfur CCNA_03362 ECF-family RNA polymerase sigma factor cofit 29 87
  Rhizobium sp. OAE497 ABIE40_RS01010 sigma-70 family RNA polymerase sigma factor insig. 31 78
  Erwinia amylovora T8 OLJFJH_08545 RNA polymerase subunit sigma-70 insig. 28 81
  Pantoea sp. MT58 IAI47_20240 sigma-70 family RNA polymerase sigma factor insig. 29 83
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 28 82
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 28 82
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 28 82
  Pseudomonas aeruginosa MRSN321 PFGADD_02077 sbrI ECF family RNA polymerase sigma factor SbrI insig. 27 82
  Pseudomonas aeruginosa PA14 IKLFDK_14715 ECF family RNA polymerase sigma factor SbrI insig. 27 82
  Pseudomonas aeruginosa PUPa3 NPBIFN_02116 sbrI ECF family RNA polymerase sigma factor SbrI insig. 27 82
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3636 RNA polymerase sigma factor, sigma-70 family insig. 30 85
  Sphingobium sp. HT1-2 GFF3033 RNA polymerase, sigma-24 subunit, ECF subfamily cofit 29 81
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15920 sigma-70 family RNA polymerase sigma factor insig. 27 88
  Rhodanobacter sp. FW510-T8 OKGIIK_10685 rpoE RNA polymerase sigma factor sig. 26 96
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01786 RNA polymerase sigma-70 factor, ECF subfamily insig. 33 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 28 80
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0865 RNA polymerase sigma factor, sigma-70 family insig. 27 87
  Pseudomonas sp. DMC3 GFF1465 ECF RNA polymerase sigma factor EcfG insig. 31 74
  Magnetospirillum magneticum AMB-1 AMB_RS09285 RNA polymerase sigma factor no data 30 71
  Xanthobacter sp. DMC5 GFF2321 ECF RNA polymerase sigma factor EcfG no data 29 76
  Burkholderia phytofirmans PsJN BPHYT_RS24975 RNA polymerase sigma24 factor strong 31 66
  Ralstonia sp. UNC404CL21Col ABZR87_RS03700 RNA polymerase sigma factor insig. 30 86
  Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE strong 27 79
  Pseudomonas protegens RBAN4 FABNJH_00920 RNA polymerase sigma factor insig. 27 82
  Shewanella loihica PV-4 Shew_1231 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 27 74
  Pseudomonas sp. BP01 JOY50_RS18970 sigma-70 family RNA polymerase sigma factor insig. 31 68
  Acidovorax sp. GW101-3H11 Ac3H11_1827 RNA polymerase sigma-70 factor, ECF subfamily insig. 29 91
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 31 66
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 29 82
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13615 RNA polymerase sigma factor insig. 28 49
  Variovorax sp. OAS795 ABID97_RS16825 sigma-70 family RNA polymerase sigma factor insig. 27 82
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3981 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 27 68
  Herbaspirillum seropedicae SmR1 HSERO_RS13530 RNA polymerase subunit sigma-24 no data 32 75
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 29 65
  Shewanella sp. ANA-3 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) no data 29 82
  Dechlorosoma suillum PS Dsui_0621 RNA polymerase sigma factor, sigma-70 family insig. 33 61
  Pseudomonas segetis P6 ACVTMO_RS12985 sigX RNA polymerase sigma factor SigX no data 31 63
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS03310 RNA polymerase sigma factor insig. 29 77
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 29 79
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 29 79
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 29 79
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 29 79
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 28 66
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS22130 RNA polymerase sigma factor insig. 28 62
  Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 28 82
  Pseudomonas sp. SVBP6 COO64_RS05350 sigX RNA polymerase sigma factor SigX no data 26 81
  Cellulophaga baltica 18 M666_RS15960 RNA polymerase sigma factor insig. 24 81
  Pseudomonas orientalis W4I3 QF045_RS22815 RNA polymerase sigma factor SigX strong 28 81
  Pseudomonas putida KT2440 PP_2088 RNA polymerase sigma factor SigX strong 26 81
  Pseudomonas simiae WCS417 PS417_20990 RNA polymerase sigma factor SigX no data 26 81
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2751 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 23 86
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 29 79
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12095 RNA polymerase subunit sigma-70 insig. 28 79
  Pseudomonas sp. BP01 JOY50_RS22140 sigX RNA polymerase sigma factor SigX insig. 26 81
  Pseudomonas fluorescens FW300-N2E3 AO353_00830 RNA polymerase subunit sigma no data 25 81
  Rhodanobacter denitrificans MT42 LRK55_RS03585 RNA polymerase sigma factor strong 42 23
  Pseudomonas sp. FW215-L2 GFF2295 ECF RNA polymerase sigma factor RpoE insig. 28 68
  Pseudomonas fluorescens FW300-N2C3 AO356_02795 RNA polymerase subunit sigma no data 28 81
  Pseudomonas fluorescens SBW25 PFLU_RS00840 RNA polymerase sigma factor insig. 27 84
  Pseudomonas fluorescens SBW25-INTG PFLU_RS00840 RNA polymerase sigma factor sig. 27 84
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS03835 RNA polymerase sigma factor strong 42 23
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS06105 RNA polymerase sigma factor insig. 42 23
  Rhodanobacter sp. FW510-T8 OKGIIK_03490 hypothetical protein insig. 30 79
  Sphingobium sp. HT1-2 GFF5201 sigma-24 (FecI-like) protein insig. 30 82
  Pseudomonas simiae WCS417 PS417_00810 RNA polymerase sigma factor insig. 27 84
  Collimonas humicola GW821-FHT01A05 MPMX01_01076 hypothetical protein insig. 26 74
  Pseudomonas fluorescens SBW25 PFLU_RS22600 RNA polymerase sigma factor SigX strong 26 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS22600 RNA polymerase sigma factor SigX strong 26 81
  Paraburkholderia graminis OAS925 ABIE53_001573 RNA polymerase sigma-70 factor (ECF subfamily) strong 33 44
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS09080 sigma-70 family RNA polymerase sigma factor cofit 29 79
  Cupriavidus basilensis FW507-4G11 RR42_RS04015 RNA polymerase sigma factor insig. 31 56
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 30 68
  Sphingobium sp. HT1-2 GFF5350 sigma-24 (FecI-like) protein insig. 30 81
  Pseudomonas aeruginosa MRSN321 PFGADD_03358 sigX RNA polymerase sigma factor SigX no data 29 66
  Pseudomonas aeruginosa PA14 IKLFDK_08585 RNA polymerase sigma factor SigX no data 29 66
  Pseudomonas aeruginosa PUPa3 NPBIFN_03394 sigX RNA polymerase sigma factor SigX no data 29 66
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1512.1 RNA polymerase sigma-70 factor insig. 27 61
  Pseudomonas syringae pv. syringae B728a Psyr_2096 Sigma-70 region 2 no data 26 81
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2096 Sigma-70 region 2 no data 26 81
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00655 RNA polymerase subunit sigma-24 strong 22 81
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF365 RNA polymerase sigma factor insig. 27 82
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20645 RNA polymerase subunit sigma-70 insig. 24 79
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04550 RNA polymerase, sigma-24 subunit, RpoE strong 33 44
  Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 29 78
  Pseudomonas segetis P6 ACVTMO_RS10610 RNA polymerase sigma factor insig. 28 68
  Synechococcus elongatus PCC 7942 Synpcc7942_1923 sigG RNA polymerase sigma factor RpoE strong 29 62
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 26 79
  Pseudomonas orientalis W4I3 QF045_RS03845 RNA polymerase sigma factor insig. 25 82
  Kangiella aquimarina DSM 16071 B158DRAFT_0596 RNA polymerase sigma factor, sigma-70 family insig. 22 81
  Paraburkholderia graminis OAS925 ABIE53_002003 RNA polymerase sigma factor (sigma-70 family) sig. 30 58
  Vibrio cholerae E7946 ATCC 55056 CSW01_12485 RNA polymerase sigma factor RpoE no data 28 86
  Pseudomonas simiae WCS417 PS417_09740 RNA polymerase subunit sigma-24 insig. 28 66
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4203.1 RNA polymerase sigma-54 factor RpoN insig. 35 33
  Variovorax sp. SCN45 GFF3863 RNA polymerase sigma factor RpoE insig. 30 78
  Collimonas humicola GW821-FHT01A05 MPMX01_02774 ECF RNA polymerase sigma factor SigR insig. 28 58
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS01445 sigma-70 family RNA polymerase sigma factor insig. 27 89
  Pseudomonas segetis P6 ACVTMO_RS16165 RNA polymerase sigma factor sig. 26 81
  Caulobacter crescentus NA1000 CCNA_01718 RNA polymerase ECF sigma factor insig. 34 65
  Caulobacter crescentus NA1000 Δfur CCNA_01718 RNA polymerase ECF sigma factor cofit 34 65
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10790 RNA polymerase sigma factor insig. 30 46
  Pseudomonas sp. S08-1 OH686_04120 RNA polymerase sigma factor RpoE insig. 29 61
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1738 RNA polymerase sigma-54 factor RpoN insig. 28 83
  Cupriavidus basilensis FW507-4G11 RR42_RS05730 DNA-directed RNA polymerase sigma-70 factor insig. 27 72
  Bosea sp. OAE506 ABIE41_RS11620 sigma-70 family RNA polymerase sigma factor insig. 24 86
  Burkholderia phytofirmans PsJN BPHYT_RS06540 RNA polymerase sigma70 factor strong 31 41
  Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 29 82
  Lysobacter sp. OAE881 ABIE51_RS13770 RNA polymerase sigma factor insig. 28 61
  Variovorax sp. SCN45 GFF320 RNA polymerase ECF-type sigma factor insig. 26 82
  Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 28 78
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 29 63
  Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 29 81
  Paraburkholderia sabiae LMG 24235 QEN71_RS31540 RNA polymerase sigma-70 factor insig. 31 74
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 71
  Pseudomonas sp. BP01 JOY50_RS26335 sigma-70 family RNA polymerase sigma factor insig. 29 69
  Rhodopseudomonas palustris CGA009 TX73_023085 RNA polymerase sigma factor cofit 28 83
  Caulobacter crescentus NA1000 CCNA_02837 RNA polymerase ECF-type sigma factor insig. 26 82
  Caulobacter crescentus NA1000 Δfur CCNA_02837 RNA polymerase ECF-type sigma factor cofit 26 82
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 26 78
  Pseudomonas sp. FW215-L2 GFF104 ECF RNA polymerase sigma factor SigK insig. 24 87
  Phocaeicola dorei CL03T12C01 ABI39_RS11710 RNA polymerase sigma factor insig. 22 65
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3517 RNA polymerase sigma-70 factor insig. 29 64
  Acidovorax sp. GW101-3H11 Ac3H11_916 RNA polymerase sigma-70 factor insig. 29 53
  Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 29 63
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2582 RNA polymerase sigma-54 factor RpoN insig. 28 75
  Pseudomonas segetis P6 ACVTMO_RS15980 sigma-70 family RNA polymerase sigma factor insig. 28 67
  Lysobacter sp. OAE881 ABIE51_RS05545 RNA polymerase sigma factor insig. 28 64
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00391 RNA polymerase sigma-H factor cofit 25 82
  Paraburkholderia graminis OAS925 ABIE53_005321 RNA polymerase sigma factor (sigma-70 family) sig. 30 66
  Bacteroides stercoris CC31F HMPREF1181_RS02545 sigma-70 family RNA polymerase sigma factor insig. 29 66
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS21465 RNA polymerase sigma factor insig. 27 83
  Ralstonia solanacearum UW163 UW163_RS17725 RNA polymerase sigma factor insig. 27 83
  Pseudomonas orientalis W4I3 QF045_RS12270 sigma-70 family RNA polymerase sigma factor insig. 27 66