Homologs of RR42_RS02080 from Cupriavidus basilensis FW507-4G11

ribosome hibernation promoting factor
SEED: Ribosome hibernation protein YhbH
KEGG: putative sigma-54 modulation protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Cupriavidus basilensis FW507-4G11 RR42_RS02080 ribosome hibernation promoting factor sig. 100 100
o Ralstonia solanacearum GMI1000 RS_RS02015 ribosomal subunit interface protein strong 84 100
o Ralstonia sp. UNC404CL21Col ABZR87_RS07055 ribosome-associated translation inhibitor RaiA strong 84 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS11165 ribosomal subunit interface protein strong 82 100
o Ralstonia solanacearum UW163 UW163_RS02415 ribosomal subunit interface protein sig. 82 100
o Ralstonia solanacearum PSI07 RPSI07_RS22135 ribosomal subunit interface protein strong 82 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS01750 ribosome-associated translation inhibitor RaiA insig. 73 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P insig. 73 96
o Burkholderia phytofirmans PsJN BPHYT_RS02900 ribosome hibernation promoting factor sig. 73 96
o Paraburkholderia graminis OAS925 ABIE53_000717 putative sigma-54 modulation protein strong 71 96
o Acidovorax sp. GW101-3H11 Ac3H11_681 Ribosome hibernation protein YhbH sig. 63 96
o Variovorax sp. OAS795 ABID97_RS04490 ribosome-associated translation inhibitor RaiA insig. 65 94
o Variovorax sp. SCN45 GFF7293 Ribosome hibernation promoting factor Hpf cofit 67 86
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2612 Ribosome hibernation protein YhbH strong 64 94
o Dechlorosoma suillum PS Dsui_0703 ribosomal subunit interface protein strong 52 91
o Castellaniella sp019104865 MT123 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA cofit 53 93
o Shewanella amazonensis SB2B Sama_3089 ribosomal subunit interface protein (RefSeq) strong 49 86
o Methylophilus sp. DMC18 GFF2268 Ribosome hibernation promoting factor cofit 46 96
o Pseudomonas stutzeri RCH2 Psest_3314 ribosomal subunit interface protein sig. 49 91
o Shewanella loihica PV-4 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) strong 46 86
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 47 85
o Pseudomonas simiae WCS417 PS417_04340 ribosome hibernation promoting factor HPF strong 48 83
o Pseudomonas syringae pv. syringae B728a Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 47 85
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 47 85
o Pseudomonas sp. DMC3 GFF1827 Ribosome hibernation promoting factor insig. 46 85
o Alteromonas macleodii MIT1002 MIT1002_00826 Ribosome hibernation promoting factor strong 45 86
o Marinobacter adhaerens HP15 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA cofit 48 83
o Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 50 83
o Shewanella sp. ANA-3 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) strong 46 86
o Pseudomonas sp. SVBP6 COO64_RS04280 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 46 85
o Pseudomonas fluorescens SBW25 PFLU_RS04395 ribosome-associated translation inhibitor RaiA cofit 48 83
o Pseudomonas fluorescens SBW25-INTG PFLU_RS04395 ribosome-associated translation inhibitor RaiA strong 48 83
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01074 Ribosome hibernation promoting factor cofit 48 83
o Pseudomonas orientalis W4I3 QF045_RS07330 ribosome-associated translation inhibitor RaiA no data 48 83
o Pseudomonas segetis P6 MPMX49_03859 Ribosome hibernation promoting factor strong 48 83
o Pseudomonas sp. RS175 PFR28_00172 Ribosome hibernation promoting factor sig. 46 85
o Shewanella oneidensis MR-1 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) sig. 46 86
o Pseudomonas aeruginosa MRSN321 DY961_RS24160 raiA;go_component=ribosome|0005840||IEA,cytosolic ribosome-associated translation inhibitor RaiA strong 49 83
o Pseudomonas aeruginosa PA14 IKLFDK_01765 Sigma 54 modulation protein / S30EA ribosomal protein strong 49 83
o Pseudomonas aeruginosa PUPa3 DQ20_RS56620 raiA;go_component=ribosome|0005840||IEA,cytosolic ribosome-associated translation inhibitor RaiA strong 49 83
o Kangiella aquimarina DSM 16071 B158DRAFT_2079 ribosomal subunit interface protein insig. 47 86
o Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 46 85
o Pseudomonas putida KT2440 PP_0951 Ribosome hibernation promoting factor strong 45 85
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 45 85
o Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 45 85
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 45 85
o Rahnella sp. WP5 EX31_RS12395 ribosome hibernation promoting factor cofit 43 86
o Pseudomonas sp. BP01 JOY50_RS11125 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 43 85
o Serratia liquefaciens MT49 IAI46_22475 ribosome hibernation promoting factor cofit 42 86
o Klebsiella pneumoniae MKP103 KDGMDA_06085 ribosome hibernation promoting factor insig. 39 86
o Pectobacterium carotovorum WPP14 HER17_RS20065 ribosome hibernation promoting factor cofit 41 86
o Klebsiella michiganensis M5al BWI76_RS25270 ribosome hibernation promoting factor sig. 39 86
o Erwinia amylovora T8 OLJFJH_07065 ribosome hibernation promoting factor sig. 40 86
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09355 ribosome hibernation promoting factor cofit 38 86
o Pantoea sp. MT58 IAI47_17190 ribosome hibernation promoting factor insig. 38 86
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 39 86
o Vibrio cholerae E7946 ATCC 55056 CSW01_12820 ribosome hibernation promoting factor insig. 42 86
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13735 hpf ribosome hibernation promoting factor insig. 36 86
o Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers sig. 37 86
o Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 37 86
o Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor insig. 37 86
o Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 37 86
o Escherichia coli ECRC100 OKFHMN_17935 Ribosome hibernation promoting factor insig. 37 86
o Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor insig. 37 86
o Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 37 86
o Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor strong 37 86
o Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor cofit 37 86
o Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 37 86
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 37 86
o Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 37 86
o Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 37 86
o Dickeya dianthicola 67-19 HGI48_RS01440 ribosome hibernation promoting factor insig. 38 86
o Dickeya dianthicola ME23 DZA65_RS01505 ribosome hibernation promoting factor insig. 38 86
o Erwinia tracheiphila SCR3 LU632_RS21285 hpf ribosome hibernation promoting factor insig. 35 86
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1661.1 Ribosome hibernation protein YhbH insig. 42 86
o Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 37 86
o Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 35 86
o Lysobacter sp. OAE881 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA cofit 37 88
o Enterobacter asburiae PDN3 EX28DRAFT_3257 ribosomal subunit interface protein cofit 33 86
o Rhodanobacter sp. FW510-T8 OKGIIK_02260 raiA ribosomal subunit interface protein strong 36 90
o Rhodanobacter denitrificans MT42 LRK55_RS12570 ribosome-associated translation inhibitor RaiA insig. 35 90
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS12870 ribosome-associated translation inhibitor RaiA strong 35 90
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS15710 ribosome-associated translation inhibitor RaiA insig. 35 89
o Acinetobacter baumannii LAC-4 RR41_RS15825 ribosome-associated translation inhibitor RaiA sig. 30 91
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA sig. 37 89
  Synechocystis sp000284455 PCC 6803 SGL_RS12505 ribosome-associated translation inhibitor RaiA cofit 35 91
  Synechococcus elongatus PCC 7942 Synpcc7942_2352 lrtA sigma 54 modulation protein / SSU ribosomal protein S30P insig. 32 84
o Acinetobacter radioresistens SK82 MPMX26_02591 Ribosome hibernation promoting factor no data 33 81
  Shewanella amazonensis SB2B Sama_0899 ribosomal subunit interface protein (RefSeq) sig. 33 89
  Shewanella oneidensis MR-1 SO3422 yfiA-2 ribosomal subunit interface protein (NCBI ptt file) sig. 34 89
  Shewanella loihica PV-4 Shew_1073 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 31 95
  Shewanella sp. ANA-3 Shewana3_1133 SSU ribosomal protein S30P / sigma 54 modulation protein (RefSeq) strong 32 91
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS10880 ribosome-associated translation inhibitor RaiA strong 28 85
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_26880 hypothetical protein insig. 29 89
  Pectobacterium carotovorum WPP14 HER17_RS05390 ribosome-associated translation inhibitor RaiA cofit 31 81
  Serratia liquefaciens MT49 IAI46_03975 ribosome-associated translation inhibitor RaiA strong 30 81
  Rahnella sp. WP5 EX31_RS07580 ribosome-associated translation inhibitor RaiA insig. 30 78
  Vibrio cholerae E7946 ATCC 55056 CSW01_03685 ribosomal subunit interface protein insig. 29 88
  Dickeya dadantii 3937 DDA3937_RS16120 ribosome-associated translation inhibitor RaiA insig. 28 87
  Erwinia amylovora T8 OLJFJH_09715 ribosome-associated translation inhibitor RaiA insig. 30 81