Homologs of Pf1N1B4_3115 from Pseudomonas fluorescens FW300-N1B4

RNA polymerase sigma factor RpoS
SEED: RNA polymerase sigma factor RpoS
KEGG: RNA polymerase nonessential primary-like sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3115 RNA polymerase sigma factor RpoS strong 100 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3037 RNA polymerase sigma factor RpoS strong 99 100
o Pseudomonas fluorescens FW300-N2C3 AO356_05885 RNA polymerase sigma factor RpoS strong 99 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4674 RNA polymerase sigma factor RpoS strong 99 100
o Pseudomonas sp. RS175 PFR28_00427 RNA polymerase sigma factor RpoS strong 98 100
o Pseudomonas fluorescens FW300-N2E3 AO353_16615 RNA polymerase sigma factor RpoS strong 97 100
o Pseudomonas fluorescens SBW25 PFLU_RS06430 RNA polymerase sigma factor RpoS cofit 97 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06430 RNA polymerase sigma factor RpoS strong 97 100
o Pseudomonas simiae WCS417 PS417_06365 RNA polymerase sigma factor strong 96 100
o Pseudomonas syringae pv. syringae B728a Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS sig. 94 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS cofit 94 100
o Pseudomonas putida KT2440 PP_1623 RNA polymerase, sigma S (sigma 38) factor strong 92 100
o Pseudomonas sp. S08-1 OH686_18185 RNA polymerase sigma factor RpoS cofit 88 100
o Pseudomonas stutzeri RCH2 Psest_2806 RNA polymerase sigma factor RpoS strong 85 100
o Marinobacter adhaerens HP15 HP15_1283 RNA polymerase, sigma 70 subunit, RpoD family strong 75 85
o Escherichia coli BL21 ECD_02591 RNA polymerase, sigma S (sigma 38) factor cofit 76 83
o Escherichia fergusonii Becca EFB2_01169 RNA polymerase sigma factor RpoS cofit 76 83
o Escherichia coli ECOR27 NOLOHH_12310 rpoS RNA polymerase sigma factor RpoS strong 76 83
o Escherichia coli ECOR38 HEPCGN_19675 rpoS RNA polymerase sigma factor RpoS cofit 76 83
o Escherichia coli ECRC101 OKFHMN_20495 rpoS RNA polymerase sigma factor RpoS insig. 76 83
o Escherichia coli ECRC101 MCAODC_11020 rpoS RNA polymerase sigma factor RpoS strong 76 83
o Escherichia coli ECRC102 NIAGMN_18265 rpoS RNA polymerase sigma factor RpoS strong 76 83
o Escherichia coli ECRC62 BNILDI_10860 rpoS RNA polymerase sigma factor RpoS strong 76 83
o Escherichia coli ECRC98 JDDGAC_24160 rpoS RNA polymerase sigma factor RpoS no data 76 83
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00992 RNA polymerase sigma factor RpoS insig. 76 83
o Escherichia coli BW25113 b2741 rpoS RNA polymerase sigma factor (NCBI) strong 76 83
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4788 RNA polymerase sigma factor RpoS strong 76 83
o Serratia liquefaciens MT49 IAI46_03790 RNA polymerase sigma factor RpoS cofit 76 83
o Enterobacter asburiae PDN3 EX28DRAFT_2837 RNA polymerase, sigma 38 subunit, RpoS strong 76 83
o Enterobacter sp. TBS_079 MPMX20_03627 RNA polymerase sigma factor RpoS strong 76 83
o Rahnella sp. WP5 EX31_RS07825 RNA polymerase sigma factor RpoS strong 76 83
o Pantoea sp. MT58 IAI47_04235 RNA polymerase sigma factor RpoS strong 76 83
o Klebsiella michiganensis M5al BWI76_RS22645 RNA polymerase sigma factor RpoS strong 75 83
o Pectobacterium carotovorum WPP14 HER17_RS04350 RNA polymerase sigma factor RpoS strong 75 83
o Dickeya dadantii 3937 DDA3937_RS16875 RNA polymerase sigma factor RpoS no data 75 83
o Dickeya dianthicola ME23 DZA65_RS18020 RNA polymerase sigma factor RpoS sig. 75 83
o Erwinia tracheiphila SCR3 LU632_RS06480 rpoS RNA polymerase sigma factor RpoS strong 75 82
o Dickeya dianthicola 67-19 HGI48_RS16945 RNA polymerase sigma factor RpoS insig. 74 83
o Shewanella loihica PV-4 Shew_1213 RpoD family RNA polymerase sigma factor (RefSeq) insig. 68 92
o Shewanella amazonensis SB2B Sama_1044 RNA polymerase sigma-38 factor (RefSeq) sig. 68 94
o Vibrio cholerae E7946 ATCC 55056 CSW01_02835 RNA polymerase sigma factor RpoS cofit 66 99
o Shewanella oneidensis MR-1 SO3432 rpoS RNA polymerase sigma-38 factor (NCBI ptt file) sig. 72 86
o Shewanella sp. ANA-3 Shewana3_1124 RNA polymerase, sigma 38 subunit, RpoS (RefSeq) sig. 72 86
o Alteromonas macleodii MIT1002 MIT1002_00625 RNA polymerase sigma factor RpoS strong 74 83
  Escherichia coli ECRC99 KEDOAH_07640 rpoS RNA polymerase sigma factor RpoS no data 77 70
o Dechlorosoma suillum PS Dsui_1971 RNA polymerase sigma factor RpoS cofit 57 81
o Ralstonia solanacearum PSI07 RPSI07_RS18140 RNA polymerase sigma factor RpoS strong 54 82
  Ralstonia solanacearum GMI1000 RS_RS06045 RNA polymerase sigma factor RpoS strong 54 82
o Herbaspirillum seropedicae SmR1 HSERO_RS14830 RNA polymerase sigma factor RpoS insig. 49 90
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15235 RNA polymerase sigma factor RpoS strong 54 82
  Ralstonia solanacearum UW163 UW163_RS12700 RNA polymerase sigma factor RpoS sig. 54 82
  Ralstonia sp. UNC404CL21Col ABZR87_RS10875 RNA polymerase sigma factor RpoS strong 54 82
  Cupriavidus basilensis FW507-4G11 RR42_RS13185 RNA polymerase sigma factor RpoS strong 52 82
  Paraburkholderia sabiae LMG 24235 QEN71_RS22240 RNA polymerase sigma factor RpoS cofit 52 81
  Burkholderia phytofirmans PsJN BPHYT_RS09115 RNA polymerase sigma factor RpoS sig. 52 81
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00844 RNA polymerase, sigma 38 subunit, RpoS no data 52 81
  Paraburkholderia graminis OAS925 ABIE53_002057 RNA polymerase nonessential primary-like sigma factor strong 52 81
o Variovorax sp. SCN45 GFF2842 RNA polymerase sigma factor RpoS insig. 47 81
o Variovorax sp. OAS795 ABID97_RS10730 sigma-70 family RNA polymerase sigma factor insig. 46 81
  Fusobacterium nucleatum SB010 HUW76_03650 RNA polymerase sigma factor RpoD no data 43 76
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04885 RNA polymerase subunit sigma no data 45 76
  Desulfovibrio vulgaris Miyazaki F DvMF_0494 RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) no data 45 67
  Desulfovibrio vulgaris Hildenborough JW710 DVU1788 rpoD RNA polymerase sigma-70 factor (TIGR) no data 43 70
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3437 RNA polymerase sigma factor, sigma-70 family no data 44 76
  Bacteroides ovatus ATCC 8483 BACOVA_00615 Sigma-70 region 2 no data 45 76
  Bacteroides stercoris CC31F HMPREF1181_RS10780 RNA polymerase sigma factor RpoD/SigA no data 45 76
  Bacteroides thetaiotaomicron VPI-5482 BT1311 RNA polymerase sigma factor rpoD (Sigma-A) (NCBI ptt file) no data 45 76
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS04285 RNA polymerase sigma factor RpoD no data 44 76
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS13945 RNA polymerase sigma factor RpoD no data 39 84
  Kangiella aquimarina DSM 16071 B158DRAFT_0818 RNA polymerase sigma factor, sigma-70 family no data 38 84
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS15895 RNA polymerase sigma factor RpoD/SigA no data 44 76
  Phocaeicola dorei CL03T12C01 ABI39_RS13985 RNA polymerase sigma factor RpoD/SigA no data 44 76
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS17770 RNA polymerase sigma factor RpoD/SigA no data 44 76
  Rhodanobacter denitrificans MT42 LRK55_RS07055 RNA polymerase sigma factor RpoD no data 39 84
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07325 RNA polymerase sigma factor RpoD no data 39 84
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS16420 RNA polymerase sigma factor RpoD/SigA no data 44 76
  Synechococcus elongatus PCC 7942 Synpcc7942_0569 rpoD4 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like strong 39 81
  Rhodanobacter sp. FW510-T8 OKGIIK_13865 rpoD RNA polymerase sigma factor RpoD no data 38 84
  Rhodospirillum rubrum S1H Rru_A2882 Sigma 70 (RpoD) (NCBI) no data 42 67
  Paraburkholderia sabiae LMG 24235 QEN71_RS13555 RNA polymerase sigma factor RpoD no data 42 67
  Pseudomonas sp. S08-1 OH686_14970 RNA polymerase sigma factor RpoD no data 42 67
  Pseudomonas syringae pv. syringae B728a Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 42 67
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 42 67
  Pseudomonas stutzeri RCH2 Psest_3682 RNA polymerase sigma factor, sigma-70 family no data 42 67
  Pseudomonas fluorescens FW300-N2E3 AO353_07385 RNA polymerase subunit sigma-70 no data 42 67
  Pseudomonas fluorescens FW300-N2C3 AO356_14265 RNA polymerase subunit sigma-70 no data 42 67
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4791 RNA polymerase sigma factor RpoD no data 42 67
  Dinoroseobacter shibae DFL-12 Dshi_2261 RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) no data 41 67
  Shewanella amazonensis SB2B Sama_0823 RNA polymerase sigma-70 factor (RefSeq) no data 43 67
  Pseudomonas sp. RS175 PFR28_04078 RNA polymerase sigma factor RpoD no data 42 67
  Acinetobacter radioresistens SK82 MPMX26_00713 RNA polymerase sigma factor RpoD no data 43 67
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1186 RNA polymerase sigma factor RpoD no data 42 67
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2513 RNA polymerase sigma factor RpoD no data 42 67
  Pseudomonas putida KT2440 PP_0387 RNA polymerase, sigma 70 (sigma D) factor no data 42 67
  Pseudomonas fluorescens SBW25 PFLU_RS27535 RNA polymerase sigma factor RpoD no data 42 67
  Pseudomonas fluorescens SBW25-INTG PFLU_RS27535 RNA polymerase sigma factor RpoD no data 42 67
  Pseudomonas simiae WCS417 PS417_25880 RNA polymerase subunit sigma-70 no data 42 67
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10595 RNA polymerase sigma factor RpoD no data 41 67
  Phaeobacter inhibens DSM 17395 PGA1_c08800 RNA polymerase sigma factor RpoD no data 41 67
  Rhizobium sp. OAE497 ABIE40_RS12720 RNA polymerase sigma factor RpoD no data 40 71