| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_03163 | | hypothetical protein | insig. | 100 | 100 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS08300 | | pseudouridine synthase | insig. | 83 | 98 |
| o | Magnetospirillum magneticum AMB-1 | AMB_RS19265 | | RNA pseudouridine synthase | cofit | 53 | 100 |
| o | Xanthobacter sp. DMC5 | GFF3765 | | hypothetical protein | insig. | 54 | 94 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS17255 | | RNA pseudouridine synthase | insig. | 53 | 96 |
| o | Bosea sp. OAE506 | ABIE41_RS04835 | | RNA pseudouridine synthase | insig. | 54 | 92 |
| | Azospirillum sp. SherDot2 | MPMX19_05341 | | hypothetical protein | insig. | 52 | 98 |
| | Azospirillum brasilense Sp245 | AZOBR_RS31090 | | pseudouridine synthase | insig. | 50 | 100 |
| o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3705 | | Pseudouridylate synthases, 23S RNA-specific | insig. | 46 | 98 |
| | Rhodopseudomonas palustris CGA009 | TX73_001090 | | RNA pseudouridine synthase | cofit | 58 | 63 |
| o | Sphingobium sp. HT1-2 | GFF1481 | | RNA pseudouridylate synthase | cofit | 47 | 91 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS15620 | | RluA family pseudouridine synthase | cofit | 45 | 97 |
| | Rhodospirillum rubrum S1H | Rru_A2659 | | Pseudouridine synthase, RluD (NCBI) | no data | 41 | 94 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_1033 | | pseudouridine synthase, RluA family | no data | 39 | 98 |
| | Azospirillum sp. SherDot2 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | insig. | 39 | 97 |
| | Sphingobium sp. HT1-2 | GFF3074 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | cofit | 38 | 97 |
| | Caulobacter crescentus NA1000 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | strong | 40 | 95 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | cofit | 40 | 95 |
| | Azospirillum brasilense Sp245 | AZOBR_RS06905 | | pseudouridine synthase | strong | 39 | 97 |
| | Bosea sp. OAE506 | ABIE41_RS14710 | | RluA family pseudouridine synthase | insig. | 39 | 96 |
| | Rhizobium sp. OAE497 | ABIE40_RS09915 | | RluA family pseudouridine synthase | sig. | 37 | 97 |
| | Sinorhizobium meliloti 1021 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | strong | 36 | 96 |
| | Agrobacterium fabrum C58 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | no data | 37 | 96 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS07865 | | RluA family pseudouridine synthase | cofit | 37 | 95 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0315 | | pseudouridine synthase, RluA family (RefSeq) | insig. | 36 | 96 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | insig. | 35 | 94 |
| | Alteromonas macleodii MIT1002 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | insig. | 36 | 96 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | no data | 33 | 95 |
| | Rhodopseudomonas palustris CGA009 | TX73_016595 | | RluA family pseudouridine synthase | insig. | 37 | 94 |
| | Acinetobacter baumannii LAC-4 | RR41_RS16980 | | RluA family pseudouridine synthase | sig. | 36 | 94 |
| | Xanthobacter sp. DMC5 | GFF1347 | | Ribosomal large subunit pseudouridine synthase C | insig. | 35 | 97 |
| | Caulobacter crescentus NA1000 | CCNA_01343 | | ribosomal large subunit pseudouridine synthase C | sig. | 36 | 98 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_01343 | | ribosomal large subunit pseudouridine synthase C | cofit | 36 | 98 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_20600 | | RNA pseudouridine synthase | sig. | 37 | 89 |
| o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS15230 | | RNA pseudouridine synthase | sig. | 34 | 89 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS10090 | | RluA family pseudouridine synthase | sig. | 40 | 75 |
| | Pseudomonas sp. S08-1 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | cofit | 35 | 85 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS11530 | | RluA family pseudouridine synthase | strong | 34 | 92 |
| | Shewanella amazonensis SB2B | Sama_1988 | | pseudouridylate synthase (RefSeq) | strong | 32 | 96 |
| | Pseudomonas stutzeri RCH2 | Psest_1680 | | pseudouridine synthase, RluA family | no data | 36 | 94 |
| | Acinetobacter radioresistens SK82 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | insig. | 34 | 92 |
| o | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS15835 | | pseudouridine synthase | sig. | 32 | 89 |
| | Pseudomonas putida KT2440 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | strong | 35 | 85 |
| | Ralstonia solanacearum GMI1000 | RS_RS05155 | | RluA family pseudouridine synthase | strong | 35 | 93 |
| | Shewanella sp. ANA-3 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | sig. | 31 | 95 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | strong | 38 | 75 |
| | Pseudomonas segetis P6 | MPMX49_02072 | | Ribosomal large subunit pseudouridine synthase C | cofit | 35 | 85 |
| o | Bacteroides thetaiotaomicron VPI-5482 | BT3772 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | strong | 31 | 89 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS19085 | | RluA family pseudouridine synthase | strong | 35 | 93 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_15135 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 35 | 92 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | strong | 35 | 93 |
| | Ralstonia solanacearum UW163 | UW163_RS11840 | | RluA family pseudouridine synthase | insig. | 35 | 93 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | sig. | 34 | 91 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | insig. | 34 | 91 |
| | Pseudomonas sp. BP01 | JOY50_RS16830 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 34 | 85 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS14155 | | pseudouridine synthase | strong | 33 | 92 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS17840 | | RluA family pseudouridine synthase | insig. | 33 | 93 |
| | Pseudomonas sp. SVBP6 | COO64_RS05845 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 34 | 85 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | strong | 34 | 85 |
| | Marinobacter adhaerens HP15 | HP15_2221 | | pseudouridine synthase, RluA family | sig. | 33 | 85 |
| | Pseudomonas sp. RS175 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | sig. | 34 | 85 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_20125 | | 23S rRNA pseudouridylate synthase | strong | 34 | 85 |
| o | Bacteroides ovatus ATCC 8483 | BACOVA_03622 | | pseudouridine synthase, RluA family | insig. | 30 | 89 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 39 | 78 |
| | Pseudomonas sp. DMC3 | GFF4765 | | Ribosomal large subunit pseudouridine synthase C | cofit | 34 | 85 |
| o | Phocaeicola dorei CL03T12C01 | ABI39_RS02130 | | RNA pseudouridine synthase | insig. | 30 | 89 |
| o | Bacteroides stercoris CC31F | HMPREF1181_RS00225 | | RNA pseudouridine synthase | insig. | 30 | 89 |
| o | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS02790 | | RNA pseudouridine synthase | sig. | 30 | 89 |
| | Pseudomonas simiae WCS417 | PS417_21480 | | 23S rRNA pseudouridylate synthase | strong | 33 | 85 |
| o | Cellulophaga baltica 18 | M666_RS13600 | | RNA pseudouridine synthase | insig. | 30 | 90 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS02725 | | RluA family pseudouridine synthase | sig. | 33 | 95 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | strong | 40 | 75 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3106 | | pseudouridine synthase (RefSeq) | insig. | 37 | 85 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS08415 | | RluA family pseudouridine synthase | sig. | 37 | 89 |
| | Shewanella loihica PV-4 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | sig. | 33 | 77 |
| | Sinorhizobium meliloti 1021 | SMc00647 | | ribosomal large subunit pseudouridine synthase | strong | 39 | 75 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 39 | 75 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 39 | 75 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS16095 | | RluA family pseudouridine synthase | insig. | 38 | 78 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_16600 | | RNA pseudouridine synthase | insig. | 37 | 80 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | cofit | 33 | 85 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | strong | 33 | 85 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04440 | | Ribosomal large subunit pseudouridine synthase C | cofit | 33 | 85 |
| | Shewanella amazonensis SB2B | Sama_2197 | | pseudouridylate synthase (RefSeq) | insig. | 39 | 75 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | cofit | 37 | 79 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS04500 | | RluA family pseudouridine synthase | cofit | 38 | 75 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS05045 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | no data | 39 | 75 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | strong | 35 | 85 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_01405 | | 23S rRNA pseudouridylate synthase | strong | 34 | 85 |
| | Lysobacter sp. OAE881 | ABIE51_RS11800 | | RluA family pseudouridine synthase | cofit | 33 | 90 |
| | Pantoea sp. MT58 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | sig. | 34 | 85 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | sig. | 32 | 92 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS17750 | | RluA family pseudouridine synthase | strong | 38 | 79 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS17895 | | RluA family pseudouridine synthase | strong | 38 | 79 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | no data | 35 | 85 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS10060 | | RluA family pseudouridine synthase | insig. | 34 | 78 |
| | Alteromonas macleodii MIT1002 | MIT1002_01219 | | Ribosomal large subunit pseudouridine synthase A | insig. | 32 | 83 |
| o | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0583 | | Pseudouridylate synthases, 23S RNA-specific | strong | 31 | 95 |
| | Shewanella loihica PV-4 | Shew_2529 | | pseudouridine synthase (RefSeq) | insig. | 35 | 85 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3559 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | insig. | 39 | 82 |