Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Alteromonas macleodii MIT1002 | MIT1002_02674 | | D-malate degradation protein R | strong | 100 | 100 |
| Alteromonas macleodii MIT1002 | MIT1002_03329 | | D-malate degradation protein R | strong | 49 | 99 |
| Vibrio cholerae E7946 ATCC 55056 | CSW01_19025 | | LysR family transcriptional regulator | insig. | 48 | 99 |
| Serratia liquefaciens MT49 | IAI46_20610 | | LysR family transcriptional regulator | insig. | 45 | 99 |
| Azospirillum brasilense Sp245 | AZOBR_RS21915 | | LysR family transcriptional regulator | strong | 40 | 99 |
| Azospirillum sp. SherDot2 | MPMX19_05002 | | HTH-type transcriptional regulator DmlR | insig. | 39 | 99 |
o | Shewanella oneidensis MR-1 | SO0369 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 41 | 95 |
o | Shewanella sp. ANA-3 | Shewana3_3800 | | LysR family transcriptional regulator (RefSeq) | insig. | 40 | 95 |
| Pseudomonas putida KT2440 | PP_3811 | | Transcriptional regulator, LysR family | insig. | 38 | 96 |
o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5905 | | Transcriptional regulator, LysR family | insig. | 37 | 97 |
| Pseudomonas fluorescens SBW25 | PFLU_RS18050 | | LysR family transcriptional regulator | insig. | 38 | 97 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS18050 | | LysR family transcriptional regulator | insig. | 38 | 97 |
o | Shewanella loihica PV-4 | Shew_2292 | | LysR family transcriptional regulator (RefSeq) | insig. | 37 | 97 |
| Burkholderia phytofirmans PsJN | BPHYT_RS26820 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS30490 | | LysR family transcriptional regulator | insig. | 35 | 98 |
| Paraburkholderia graminis OAS925 | ABIE53_005907 | | DNA-binding transcriptional LysR family regulator | insig. | 35 | 97 |
o | Paraburkholderia sabiae LMG 24235 | QEN71_RS14890 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| Serratia liquefaciens MT49 | IAI46_16195 | | LysR family transcriptional regulator | insig. | 38 | 98 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02887 | | transcriptional regulator, LysR family | no data | 35 | 98 |
| Pseudomonas sp. RS175 | PFR28_02643 | | HTH-type transcriptional regulator DmlR | insig. | 36 | 97 |
| Pseudomonas simiae WCS417 | PS417_16085 | | LysR family transcriptional regulator | insig. | 37 | 97 |
| Pseudomonas fluorescens FW300-N2E3 | AO353_22295 | | LysR family transcriptional regulator | insig. | 37 | 97 |
| Azospirillum sp. SherDot2 | MPMX19_04565 | | HTH-type transcriptional regulator PgrR | insig. | 38 | 96 |
| Pseudomonas fluorescens GW456-L13 | PfGW456L13_3857 | | Transcriptional regulator, LysR family | insig. | 36 | 97 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_21990 | | LysR family transcriptional regulator | insig. | 37 | 97 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_259 | | Transcriptional regulator, LysR family | insig. | 37 | 97 |
| Rahnella sp. WP5 | EX31_RS16730 | | LysR family transcriptional regulator | insig. | 36 | 96 |
| Magnetospirillum magneticum AMB-1 | AMB_RS01140 | | LysR family transcriptional regulator | cofit | 36 | 97 |
| Cupriavidus basilensis FW507-4G11 | RR42_RS09305 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| Rhodospirillum rubrum S1H | Rru_A1041 | | Transcriptional Regulator, LysR family (NCBI) | insig. | 39 | 95 |
| Dechlorosoma suillum PS | Dsui_2353 | | transcriptional regulator | insig. | 36 | 97 |
| Pseudomonas sp. RS175 | PFR28_00531 | | HTH-type transcriptional regulator DmlR | insig. | 35 | 97 |
| Marinobacter adhaerens HP15 | HP15_936 | | transcriptional regulator, LysR family protein | insig. | 35 | 94 |
o | Ralstonia solanacearum GMI1000 | RS_RS11675 | | LysR family transcriptional regulator | insig. | 34 | 95 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_05365 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| Rhodanobacter denitrificans MT42 | LRK55_RS12490 | | LysR family transcriptional regulator | insig. | 36 | 98 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2931 | | Transcriptional regulator, LysR family | insig. | 35 | 97 |
| Pseudomonas fluorescens SBW25 | PFLU_RS06600 | | LysR family transcriptional regulator | insig. | 33 | 97 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS06600 | | LysR family transcriptional regulator | insig. | 33 | 97 |
| Marinobacter adhaerens HP15 | HP15_2748 | | transcriptional regulator, LysR family protein | insig. | 38 | 90 |
| Bosea sp. OAE506 | ABIE41_RS06370 | | LysR family transcriptional regulator | insig. | 36 | 98 |
| Pseudomonas fluorescens FW300-N2E3 | AO353_17080 | | LysR family transcriptional regulator | insig. | 34 | 97 |
| Pseudomonas syringae pv. syringae B728a | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 33 | 97 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 33 | 97 |
| Rhodanobacter denitrificans FW104-10B01 | LRK54_RS12790 | | LysR family transcriptional regulator | insig. | 36 | 98 |
| Herbaspirillum seropedicae SmR1 | HSERO_RS02935 | | LysR family transcriptional regulator | insig. | 34 | 97 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3207 | | Transcriptional regulator, LysR family | insig. | 35 | 96 |
| Pseudomonas fluorescens FW300-N2E3 | AO353_19415 | | LysR family transcriptional regulator | insig. | 32 | 97 |
| Shewanella oneidensis MR-1 | SOA0165 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 35 | 94 |
| Pseudomonas syringae pv. syringae B728a | Psyr_2951 | | transcriptional regulator, LysR family | insig. | 33 | 98 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2951 | | transcriptional regulator, LysR family | insig. | 33 | 98 |
| Variovorax sp. SCN45 | GFF477 | | Transcriptional regulator, LysR family | insig. | 37 | 97 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF461 | | Transcriptional regulator, LysR family | insig. | 33 | 97 |
| Variovorax sp. OAS795 | ABID97_RS17535 | | LysR family transcriptional regulator | insig. | 36 | 99 |
| Pseudomonas simiae WCS417 | PS417_06570 | | LysR family transcriptional regulator | insig. | 33 | 97 |
| Castellaniella sp019104865 MT123 | ABCV34_RS01420 | | LysR family transcriptional regulator | insig. | 35 | 94 |
| Shewanella loihica PV-4 | Shew_2278 | | LysR family transcriptional regulator (RefSeq) | insig. | 34 | 97 |
| Pseudomonas fluorescens GW456-L13 | PfGW456L13_4612 | | Transcriptional regulator, LysR family | insig. | 34 | 96 |
| Bosea sp. OAE506 | ABIE41_RS22155 | | LysR family transcriptional regulator | insig. | 35 | 98 |
| Paraburkholderia graminis OAS925 | ABIE53_001468 | | DNA-binding transcriptional LysR family regulator | insig. | 33 | 99 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_29570 | | LysR family transcriptional regulator | insig. | 34 | 98 |
| Pseudomonas sp. S08-1 | OH686_18385 | | Transcriptional regulator, LysR family | insig. | 33 | 97 |
| Serratia liquefaciens MT49 | IAI46_20535 | | LysR family transcriptional regulator | insig. | 35 | 95 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05865 | | transcriptional regulator, LysR family | insig. | 32 | 99 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03714 | | transcriptional regulator, LysR family | insig. | 34 | 97 |
| Ralstonia solanacearum IBSBF1503 | RALBFv3_RS06700 | | LysR family transcriptional regulator | insig. | 35 | 95 |
| Ralstonia solanacearum UW163 | UW163_RS06915 | | LysR family transcriptional regulator | insig. | 35 | 95 |
| Shewanella loihica PV-4 | Shew_1539 | | LysR family transcriptional regulator (RefSeq) | insig. | 34 | 97 |
| Pseudomonas sp. RS175 | PFR28_01035 | | HTH-type transcriptional regulator PgrR | insig. | 37 | 95 |
| Pantoea sp. MT58 | IAI47_01190 | | LysR family transcriptional regulator | insig. | 34 | 97 |
| Pseudomonas fluorescens GW456-L13 | PfGW456L13_4683 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 33 | 96 |
| Shewanella oneidensis MR-1 | SO2053 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 35 | 95 |
o | Agrobacterium fabrum C58 | Atu5206 | | LysR family transcriptional regulator | insig. | 32 | 96 |
| Pseudomonas syringae pv. syringae B728a | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 34 | 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 34 | 96 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5561 | | LysR-family transcriptional regulator clustered with PA0057 | insig. | 37 | 95 |
| Pseudomonas sp. RS175 | PFR28_00419 | | HTH-type transcriptional regulator DmlR | strong | 34 | 96 |
| Rhodospirillum rubrum S1H | Rru_A2257 | | Transcriptional Regulator, LysR family (NCBI) | strong | 33 | 95 |
| Burkholderia phytofirmans PsJN | BPHYT_RS20365 | | LysR family transcriptional regulator | insig. | 37 | 96 |
| Klebsiella michiganensis M5al | BWI76_RS03325 | | LysR family transcriptional regulator | insig. | 32 | 95 |
| Burkholderia phytofirmans PsJN | BPHYT_RS10570 | | LysR family transcriptional regulator | strong | 34 | 99 |
| Pseudomonas fluorescens SBW25 | PFLU_RS06390 | | LysR family transcriptional regulator | insig. | 33 | 96 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS06390 | | LysR family transcriptional regulator | cofit | 33 | 96 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS19275 | | LysR family transcriptional regulator | insig. | 32 | 98 |
| Pseudomonas sp. S08-1 | OH686_04560 | | Transcriptional regulator, LysR family | cofit | 36 | 95 |
| Ralstonia solanacearum PSI07 | RPSI07_RS03985 | | LysR family transcriptional regulator | insig. | 35 | 95 |
o | Ralstonia sp. UNC404CL21Col | ABZR87_RS02875 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| Pseudomonas fluorescens FW300-N2E3 | AO353_16575 | | LysR family transcriptional regulator | insig. | 33 | 96 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_05925 | | LysR family transcriptional regulator | strong | 33 | 99 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_01425 | | LysR family transcriptional regulator | insig. | 35 | 95 |
| Alteromonas macleodii MIT1002 | MIT1002_03088 | | D-malate degradation protein R | insig. | 34 | 97 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4897 | | Transcriptional regulator, LysR family | insig. | 33 | 96 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3107 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 33 | 99 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3045 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | strong | 33 | 99 |
| Pseudomonas simiae WCS417 | PS417_09485 | | LysR family transcriptional regulator | insig. | 32 | 98 |
| Pseudomonas stutzeri RCH2 | Psest_2817 | | Transcriptional regulator | insig. | 35 | 99 |
| Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS06710 | | LysR family transcriptional regulator | insig. | 35 | 96 |
| Pseudomonas stutzeri RCH2 | Psest_2163 | | Transcriptional regulator | insig. | 34 | 96 |
| Pseudomonas simiae WCS417 | PS417_07315 | | LysR family transcriptional regulator | sig. | 37 | 99 |
| Ralstonia solanacearum GMI1000 | RS_RS21490 | | LysR family transcriptional regulator | insig. | 34 | 95 |