Homologs of HMPREF1078_RS16075 from Parabacteroides merdae CL09T00C40

AAA family ATPase
SEED: DNA repair and recombination protein, putative helicase

Top 100 hits from BLASTp (E < 0.01)

Or try PaperBLAST, fast.genomics, the ENIGMA genome browser, or the comparative fitness browser

Orth Species Gene Name Description Fitness %Id Cov
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS16075 AAA family ATPase insig. 100 100
o Bacteroides stercoris CC31F HMPREF1181_RS15045 AAA family ATPase insig. 51 100
o Bacteroides ovatus ATCC 8483 BACOVA_02424 HRDC domain protein insig. 51 99
o Bacteroides thetaiotaomicron VPI-5482 BT0721 DNA repair and recombination protein, putative helicase (NCBI ptt file) sig. 51 100
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11530 hypothetical protein insig. 40 98
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07075 HRDC domain-containing protein insig. 40 99
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS18430 helicase insig. 42 76
  Bacteroides thetaiotaomicron VPI-5482 BT4130 putative helicase (NCBI ptt file) insig. 44 66
  Bacteroides ovatus ATCC 8483 BACOVA_04940 putative molybdenum cofactor biosynthesis protein C insig. 45 63
  Bacteroides stercoris CC31F HMPREF1181_RS06420 AAA family ATPase insig. 45 63
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14515 AAA family ATPase insig. 46 63
  Phocaeicola dorei CL03T12C01 ABI39_RS10135 AAA family ATPase insig. 46 63
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS14865 tetratricopeptide repeat protein insig. 42 67
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1129 PIF1 helicase. insig. 48 58
  Acinetobacter radioresistens SK82 MPMX26_01764 ATP-dependent RecD-like DNA helicase insig. 32 60
  Bifidobacterium breve UCC2003 BBR_RS18030 helicase insig. 32 59
  Rhodopseudomonas palustris CGA009 TX73_025080 DNA helicase RecQ insig. 39 13
  Acidovorax sp. GW101-3H11 Ac3H11_3308 ATP-dependent DNA helicase RecQ strong 40 13
  Paraburkholderia sabiae LMG 24235 QEN71_RS28295 DNA helicase RecQ insig. 34 13
  Burkholderia phytofirmans PsJN BPHYT_RS18145 ATP-dependent DNA helicase RecQ insig. 36 13
  Paraburkholderia graminis OAS925 ABIE53_003792 ATP-dependent DNA helicase RecQ insig. 36 13
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06595 ATP-dependent DNA helicase RecQ no data 36 13
  Variovorax sp. SCN45 GFF6415 ATP-dependent DNA helicase RecQ insig. 35 14
  Variovorax sp. OAS795 ABID97_RS03395 DNA helicase RecQ sig. 36 14
  Mycobacterium tuberculosis H37Rv Rv3198c Probable ATP-dependent DNA helicase II UvrD2 insig. 39 9
  Herbaspirillum seropedicae SmR1 HSERO_RS02465 ATP-dependent DNA helicase RecQ strong 31 14
  Agrobacterium fabrum C58 Atu0061 ATP-dependent DNA helicase insig. 28 22
  Agrobacterium fabrum C58 Atu2026 exodeoxyribonuclease V sig. 24 57
  Acinetobacter radioresistens SK82 MPMX26_03150 ATP-dependent RecD-like DNA helicase cofit 21 56
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS07220 DNA helicase RecQ insig. 29 14
  Ralstonia solanacearum UW163 UW163_RS06400 DNA helicase RecQ insig. 29 14
  Ralstonia solanacearum GMI1000 RS_RS15155 DNA helicase RecQ insig. 30 14
  Ralstonia solanacearum PSI07 RPSI07_RS10025 DNA helicase RecQ insig. 29 14
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1738 Ti-type conjugative transfer relaxase TraA insig. 21 54
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2220 pif1-like DNA repair helicase (from data) strong 31 20
  Ralstonia sp. UNC404CL21Col ABZR87_RS02880 DNA helicase RecQ insig. 27 14
  Agrobacterium fabrum C58 Atu6127 OriT nicking enzyme, Dtr system insig. 21 54
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14575 DNA helicase RecQ insig. 28 14
  Alteromonas macleodii MIT1002 MIT1002_00148 ATP-dependent DNA helicase RecQ insig. 25 15
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1958 ATP-dependent DNA helicase RecQ insig. 30 15
  Sinorhizobium meliloti 1021 SMc01414 hypothetical protein insig. 24 57
  Azospirillum brasilense Sp245 AZOBR_RS05435 recombinase RecD insig. 24 54
  Dechlorosoma suillum PS Dsui_3092 ATP-dependent DNA helicase RecQ cofit 38 9
  Vibrio cholerae E7946 ATCC 55056 CSW01_01045 DNA helicase RecQ cofit 30 10
  Cupriavidus basilensis FW507-4G11 RR42_RS19310 ATP-dependent DNA helicase RecQ strong 30 15
  Rhizobium sp. OAE497 ABIE40_RS11430 ATP-dependent RecD-like DNA helicase insig. 24 54
  Rhodopseudomonas palustris CGA009 TX73_011690 AAA family ATPase insig. 31 19
  Lysobacter sp. OAE881 ABIE51_RS05145 DNA helicase RecQ insig. 27 13
  Pantoea sp. MT58 IAI47_18360 ATP-dependent DNA helicase RecQ insig. 29 10
  Serratia liquefaciens MT49 IAI46_00770 ATP-dependent DNA helicase RecQ cofit 28 10
  Dickeya dianthicola 67-19 HGI48_RS20005 ATP-dependent DNA helicase RecQ insig. 28 10
  Dickeya dianthicola ME23 DZA65_RS21045 ATP-dependent DNA helicase RecQ insig. 28 10
  Sinorhizobium meliloti 1021 SMc01566 ATP-dependent DNA helicase insig. 30 13
  Erwinia tracheiphila SCR3 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ insig. 28 10
  Enterobacter asburiae PDN3 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ insig. 26 10
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF248 ATP-dependent DNA helicase RecQ insig. 26 10
  Rahnella sp. WP5 EX31_RS15210 ATP-dependent DNA helicase RecQ insig. 29 10
  Shewanella oneidensis MR-1 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) strong 29 10
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0166 ATP-dependent DNA helicase RecQ no data 37 10
  Pectobacterium carotovorum WPP14 HER17_RS01395 ATP-dependent DNA helicase RecQ cofit 28 10
  Dickeya dadantii 3937 DDA3937_RS19850 ATP-dependent DNA helicase RecQ insig. 26 10
  Magnetospirillum magneticum AMB-1 AMB_RS21505 DNA helicase RecQ cofit 35 10
  Pseudomonas fluorescens FW300-N2E3 AO353_18430 ATP-dependent DNA helicase RecQ strong 27 13
  Bosea sp. OAE506 ABIE41_RS04160 DNA helicase RecQ insig. 26 13
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_20110 DNA helicase RecQ strong 32 10
  Enterobacter sp. TBS_079 MPMX20_04458 ATP-dependent DNA helicase RecQ insig. 26 10
  Paraburkholderia graminis OAS925 ABIE53_000496 exodeoxyribonuclease V alpha subunit insig. 32 16
  Shewanella amazonensis SB2B Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) cofit 31 10
  Castellaniella sp019104865 MT123 ABCV34_RS07985 DNA helicase RecQ insig. 30 13
  Rhodanobacter denitrificans MT42 LRK55_RS12700 DNA helicase RecQ insig. 28 9
  Rhodospirillum rubrum S1H Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) insig. 24 16
  Fusobacterium nucleatum SB010 HUW76_07235 DNA helicase RecQ strong 31 11
  Rhizobium sp. OAE497 ABIE40_RS12745 DNA helicase RecQ insig. 25 14
  Bacteroides stercoris CC31F HMPREF1181_RS09230 AAA family ATPase insig. 30 21
  Escherichia fergusonii Becca EFB2_04815 ATP-dependent DNA helicase RecQ insig. 25 10
  Escherichia coli ECOR27 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ insig. 25 10
  Escherichia coli ECOR38 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ insig. 25 10
  Escherichia coli ECRC100 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ insig. 25 10
  Escherichia coli ECRC101 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ insig. 25 10
  Escherichia coli ECRC102 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ insig. 25 10
  Escherichia coli ECRC62 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ cofit 25 10
  Escherichia coli ECRC98 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ cofit 25 10
  Escherichia coli ECRC99 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ no data 25 10
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04229 ATP-dependent DNA helicase RecQ insig. 25 10
  Escherichia coli Nissle 1917 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ insig. 25 10
  Escherichia coli BW25113 b3822 recQ ATP-dependent DNA helicase (NCBI) sig. 25 10
  Escherichia coli BL21 ECD_03701 ATP-dependent DNA helicase cofit 25 10
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0784 ATP-dependent DNA helicase RecQ insig. 31 10
  Shewanella loihica PV-4 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) strong 29 12
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ insig. 36 9
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS13000 DNA helicase RecQ insig. 27 9
  Klebsiella michiganensis M5al BWI76_RS01245 DNA helicase RecQ sig. 25 10
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_06435 ATP-dependent endonuclease insig. 27 28
  Pseudomonas syringae pv. syringae B728a Psyr_3738 ATP-dependent DNA helicase RecQ insig. 30 9
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3738 ATP-dependent DNA helicase RecQ insig. 30 9
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS20865 DNA helicase RecQ insig. 28 19
  Shewanella sp. ANA-3 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) cofit 27 10
  Phaeobacter inhibens DSM 17395 PGA1_c31900 ATP-dependent DNA helicase RecQ sig. 35 12
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12710 pif1-like DNA repair helicase (from data) cofit 29 24
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS17040 DNA helicase RecQ cofit 27 10