| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Variovorax sp. SCN45 | GFF923 | | Chromosome partition protein smc | insig. | 100 | 100 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS12450 | | histidine kinase | cofit | 39 | 85 |
| | Rhizobium sp. OAE497 | ABIE40_RS25855 | | response regulator | insig. | 39 | 81 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06214 | | PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) | insig. | 38 | 94 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS34760 | | sensor histidine kinase | sig. | 38 | 94 |
| | Rhizobium sp. OAE497 | ABIE40_RS30340 | | response regulator | insig. | 37 | 87 |
| | Paraburkholderia graminis OAS925 | ABIE53_004652 | | signal transduction histidine kinase/CheY-like chemotaxis protein | sig. | 38 | 90 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2537 | | PAS/PAC sensor hybrid histidine kinase (RefSeq) | strong | 33 | 93 |
| | Pseudomonas putida KT2440 | PP_3651 | | Sensor histidine kinase/response regulator | sig. | 33 | 88 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS07900 | | response regulator | insig. | 35 | 94 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS07900 | | response regulator | insig. | 35 | 94 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01418 | | Signal transduction histidine kinase | insig. | 35 | 91 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS18930 | | PAS domain S-box protein | insig. | 35 | 84 |
| | Pseudomonas simiae WCS417 | PS417_16940 | | chemotaxis protein CheY | insig. | 32 | 92 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS32770 | | histidine kinase | insig. | 34 | 87 |
| | Pseudomonas sp. RS175 | PFR28_01496 | | Sensor histidine kinase RcsC | insig. | 31 | 95 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS07355 | | LuxR family transcriptional regulator | no data | 29 | 100 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3196.1 | | response regulator | insig. | 37 | 86 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0581 | | response regulator/anti-anti-sigma factor (TIGR) | cofit | 32 | 90 |
| | Pseudomonas stutzeri RCH2 | Psest_4139 | | PAS domain S-box | sig. | 34 | 83 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS02235 | | response regulator | strong | 42 | 70 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_18195 | | chemotaxis protein CheY | insig. | 33 | 94 |
| | Paraburkholderia graminis OAS925 | ABIE53_004940 | | signal transduction histidine kinase | insig. | 31 | 86 |
| | Rhizobium sp. OAE497 | ABIE40_RS26335 | | sigma-54 dependent transcriptional regulator | strong | 33 | 84 |
| | Paraburkholderia graminis OAS925 | ABIE53_005219 | | PAS domain S-box-containing protein | insig. | 39 | 83 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_23910 | | response regulator | insig. | 35 | 79 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3795.1 | | Histidine kinase/response regulator hybrid protein | sig. | 32 | 87 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16265 | | Fis family transcriptional regulator | strong | 35 | 89 |
| | Variovorax sp. OAS795 | ABID97_RS05490 | | PAS domain S-box protein | sig. | 39 | 86 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_21755 | | histidine kinase | insig. | 38 | 79 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1223 | | anti-sigma-factor antagonist (RefSeq) | sig. | 33 | 90 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_27655 | | response regulator | no data | 32 | 86 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS00085 | | response regulator transcription factor | no data | 28 | 91 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS07665 | | response regulator transcription factor | no data | 28 | 91 |
| | Azospirillum sp. SherDot2 | MPMX19_03579 | | Sensor histidine kinase RcsC | insig. | 36 | 86 |
| | Variovorax sp. OAS795 | ABID97_RS26605 | | sigma-54 dependent transcriptional regulator | insig. | 35 | 85 |
| | Pseudomonas sp. DMC3 | GFF3711 | | Sensor histidine kinase RcsC | cofit | 35 | 85 |
| | Pseudomonas sp. BP01 | JOY50_RS14825 | | sigma-54 dependent transcriptional regulator | insig. | 34 | 90 |
| | Paraburkholderia graminis OAS925 | ABIE53_005282 | | PAS domain S-box-containing protein | sig. | 34 | 86 |
| | Pseudomonas putida KT2440 | PP_1066 | | C4-dicarboxylate transport transcriptional regulatory protein | strong | 34 | 90 |
| | Pseudomonas sp. SVBP6 | COO64_RS16760 | | sigma-54 dependent transcriptional regulator | insig. | 34 | 90 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4855 | | Response regulator | sig. | 33 | 86 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS20795 | | PAS domain-containing sensor histidine kinase | insig. | 33 | 87 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_18205 | | Fis family transcriptional regulator | insig. | 34 | 89 |
| | Pseudomonas sp. DMC3 | GFF5115 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 35 | 87 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_776 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 34 | 89 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS09945 | | PAS domain S-box protein | insig. | 38 | 84 |
| | Pseudomonas sp. S08-1 | OH686_13325 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | cofit | 37 | 88 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3913 | | Helix-turn-helix, Fis-type | insig. | 34 | 87 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3913 | | Helix-turn-helix, Fis-type | insig. | 34 | 87 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5565 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 34 | 89 |
| | Azospirillum sp. SherDot2 | MPMX19_04512 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 34 | 86 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS08745 | | response regulator transcription factor | no data | 28 | 91 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2871 | | Histidine kinase/response regulator hybrid protein | insig. | 36 | 82 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4775 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | strong | 34 | 89 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS04620 | | PAS domain-containing sensor histidine kinase | insig. | 33 | 91 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5636 | | Histidine kinase/response regulator hybrid protein | sig. | 36 | 82 |
| | Pseudomonas sp. RS175 | PFR28_03376 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | sig. | 34 | 89 |
| | Agrobacterium fabrum C58 | Atu0629 | | two component response regulator | insig. | 33 | 81 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_03180 | | transcriptional regulatory protein RprY | no data | 28 | 91 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2165 | | two-component system response regulator (NCBI ptt file) | no data | 28 | 91 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_6044 | | Sensor histidine kinase/response regulator | sig. | 33 | 92 |
| | Variovorax sp. SCN45 | GFF1691 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 33 | 87 |
| | Pseudomonas sp. RS175 | PFR28_02946 | | Sensor histidine kinase RcsC | insig. | 33 | 92 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_07640 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 33 | 88 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS28960 | | histidine kinase | insig. | 38 | 83 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2044 | | Histidine kinase/response regulator hybrid protein | strong | 35 | 82 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS19025 | | sigma-54 dependent transcriptional regulator | strong | 34 | 89 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_06350 | | Fis family transcriptional regulator | strong | 34 | 89 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS53150 | | sigma-54 dependent transcriptional regulator | strong | 34 | 89 |
| | Ralstonia solanacearum GMI1000 | RS_RS01635 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 33 | 88 |
| | Pseudomonas sp. DMC3 | GFF1553 | | Sensor histidine kinase RcsC | insig. | 32 | 87 |
| | Alteromonas macleodii MIT1002 | MIT1002_00654 | | Signal transduction histidine-protein kinase BarA | insig. | 32 | 88 |
| | Azospirillum brasilense Sp245 | AZOBR_RS24025 | | transcriptional regulator | strong | 29 | 87 |
| | Rhizobium sp. OAE497 | ABIE40_RS27400 | | PAS domain-containing sensor histidine kinase | insig. | 36 | 87 |
| | Dechlorosoma suillum PS | Dsui_3486 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | cofit | 34 | 94 |
| | Pseudomonas orientalis W4I3 | QF045_RS17035 | | response regulator | cofit | 33 | 87 |
| | Pseudomonas segetis P6 | ACVTMO_RS01525 | | response regulator | insig. | 33 | 86 |
| | Pseudomonas stutzeri RCH2 | Psest_4347 | | PAS domain S-box | insig. | 29 | 95 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS18990 | | response regulator | insig. | 37 | 65 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1607.1 | | Histidine kinase/response regulator hybrid protein | insig. | 37 | 94 |
| | Azospirillum sp. SherDot2 | MPMX19_05885 | | Sensor histidine kinase RcsC | insig. | 37 | 83 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01294 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | strong | 34 | 88 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF610 | | Putative sensory histidine kinase YfhA | insig. | 32 | 98 |
| | Ralstonia solanacearum GMI1000 | RS_RS24130 | | DNA-binding response regulator | insig. | 32 | 83 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0681 | | sensor histidine kinase/response regulator (TIGR) | strong | 31 | 87 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS16930 | | chemotaxis protein CheY | insig. | 39 | 65 |
| | Azospirillum brasilense Sp245 | AZOBR_RS31670 | | hypothetical protein | insig. | 34 | 91 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS10795 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 33 | 88 |
| | Ralstonia solanacearum UW163 | UW163_RS02785 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 33 | 88 |
| | Pseudomonas orientalis W4I3 | QF045_RS08460 | | sigma-54 dependent transcriptional regulator | cofit | 33 | 97 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS17290 | | DNA-binding response regulator | insig. | 32 | 83 |
| | Ralstonia solanacearum UW163 | UW163_RS21855 | | DNA-binding response regulator | insig. | 32 | 83 |
| | Agrobacterium fabrum C58 | Atu4047 | | two component sensor kinase/response regulator hybrid | insig. | 31 | 97 |
| | Pseudomonas sp. RS175 | PFR28_01718 | | Response regulator receiver protein CpdR | sig. | 31 | 97 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS03980 | | Fis family transcriptional regulator | strong | 36 | 90 |
| | Pseudomonas simiae WCS417 | PS417_05535 | | Fis family transcriptional regulator | strong | 33 | 89 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS12850 | | LuxR family transcriptional regulator | no data | 31 | 96 |
| | Paraburkholderia graminis OAS925 | ABIE53_002795 | | FixJ family two-component response regulator | no data | 31 | 96 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1292 | | multi-sensor hybrid histidine kinase | insig. | 31 | 92 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1292 | | multi-sensor hybrid histidine kinase | insig. | 31 | 92 |
| | Marinobacter adhaerens HP15 | HP15_2093 | | signal transduction histidine kinase | cofit | 26 | 90 |
| | Pseudomonas stutzeri RCH2 | Psest_3963 | | PAS domain S-box | strong | 33 | 90 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS22520 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 33 | 88 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_4011 | | Putative sensory histidine kinase YfhA | sig. | 31 | 94 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00464 | | two component transcriptional regulator, LuxR family | no data | 31 | 96 |
| | Pseudomonas sp. DMC3 | GFF2843 | | Sensor histidine kinase RcsC | insig. | 37 | 87 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3194.1 | | Histidine kinase/response regulator hybrid protein | insig. | 35 | 94 |
| | Paraburkholderia graminis OAS925 | ABIE53_001102 | | PAS domain S-box-containing protein | insig. | 34 | 86 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS05620 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 34 | 87 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS05620 | | sigma-54-dependent Fis family transcriptional regulator | strong | 34 | 87 |
| | Azospirillum sp. SherDot2 | MPMX19_04555 | | Sensor histidine kinase RcsC | insig. | 32 | 94 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS04550 | | response regulator transcription factor | no data | 25 | 92 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS22085 | | response regulator | insig. | 33 | 84 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02812 | | Sensor histidine kinase RcsC | cofit | 32 | 94 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS05715 | | oxygen response regulator transcription factor FixJ | no data | 31 | 96 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS04815 | | response regulator transcription factor | insig. | 30 | 82 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_02885 | ompR | response regulator | insig. | 29 | 87 |
| | Sinorhizobium meliloti 1021 | SMa1686 | | Two-component response regulator | insig. | 35 | 82 |
| | Azospirillum brasilense Sp245 | AZOBR_RS01895 | | transcriptional regulator | no data | 33 | 86 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS00150 | | DNA-binding response regulator | insig. | 30 | 87 |
| | Variovorax sp. SCN45 | GFF6215 | | no description | insig. | 29 | 89 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2113 | | multi-sensor hybrid histidine kinase | insig. | 27 | 94 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2113 | | multi-sensor hybrid histidine kinase | insig. | 27 | 94 |
| | Pseudomonas sp. BP01 | JOY50_RS24365 | | response regulator | no data | 33 | 91 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3805 | | two-component system sensor histidine kinase (NCBI ptt file) | strong | 32 | 83 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS12120 | | hypothetical protein | insig. | 33 | 85 |
| | Pseudomonas sp. SVBP6 | COO64_RS14350 | | response regulator | no data | 33 | 88 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2281 | torS | sensor histidine kinase/response regulator (TIGR) | insig. | 33 | 90 |
| | Pseudomonas sp. RS175 | PFR28_01392 | | Sensor histidine kinase RcsC | insig. | 33 | 82 |
| | Paraburkholderia graminis OAS925 | ABIE53_003030 | | two-component system response regulator HydG | strong | 37 | 83 |
| | Rhizobium sp. OAE497 | ABIE40_RS29415 | | PAS domain-containing protein | insig. | 36 | 84 |
| | Lysobacter sp. OAE881 | ABIE51_RS16115 | | hybrid sensor histidine kinase/response regulator | cofit | 35 | 90 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS19095 | | hybrid sensor histidine kinase/response regulator | insig. | 34 | 90 |
| | Sphingobium sp. HT1-2 | GFF1917 | | integral membrane sensor hybrid histidine kinase | cofit | 33 | 87 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS01705 | | Fis family transcriptional regulator | insig. | 33 | 89 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_03651 | | ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein | sig. | 31 | 87 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS12005 | | response regulator transcription factor | insig. | 31 | 82 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_12485 | | two-component system response regulator | strong | 30 | 91 |
| | Azospirillum brasilense Sp245 | AZOBR_RS16445 | | chemotaxis protein CheY | no data | 29 | 84 |
| | Pseudomonas stutzeri RCH2 | Psest_3217 | | PAS domain S-box | strong | 38 | 61 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS14340 | | Fis family transcriptional regulator | cofit | 37 | 83 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04368 | | two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family | cofit | 37 | 83 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_27625 | | histidine kinase | sig. | 34 | 89 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01739 | | Signal transduction histidine kinase | insig. | 34 | 81 |
| | Sphingobium sp. HT1-2 | GFF4655 | | hypothetical protein | cofit | 34 | 91 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS02400 | | DNA-binding response regulator | insig. | 32 | 83 |
| | Rhodospirillum rubrum S1H | Rru_A1500 | | Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity (NCBI) | insig. | 31 | 88 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS09270 | | histidine kinase | cofit | 30 | 84 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3047 | | Response regulator | strong | 33 | 79 |
| | Pseudomonas putida KT2440 | PP_3546 | | Sensory box histidine kinase/response regulator | insig. | 32 | 91 |
| | Xanthobacter sp. DMC5 | GFF2698 | | Sensor histidine kinase RcsC | insig. | 32 | 83 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2550 | | multi-sensor signal transduction histidine kinase (RefSeq) | insig. | 37 | 84 |
| | Azospirillum sp. SherDot2 | MPMX19_00072 | | Aerobic respiration control protein ArcA | insig. | 36 | 65 |
| | Pseudomonas stutzeri RCH2 | Psest_0693 | | His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | strong | 35 | 85 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02037 | | two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family | cofit | 34 | 87 |
| | Alteromonas macleodii MIT1002 | MIT1002_00641 | | Transcriptional regulatory protein QseB | insig. | 32 | 80 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01637 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | insig. | 32 | 90 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.639.1 | | FIG037127: Two-component system sensor protein | insig. | 31 | 94 |
| | Pseudomonas sp. BP01 | JOY50_RS03145 | | response regulator | insig. | 30 | 94 |
| | Bosea sp. OAE506 | ABIE41_RS08525 | | cell cycle two-component system response regulator CpdR | no data | 30 | 87 |
| | Xanthobacter sp. DMC5 | GFF2106 | | Transcriptional regulatory protein OmpR | insig. | 29 | 79 |
| | Shewanella amazonensis SB2B | Sama_0154 | | response regulator receiver protein (RefSeq) | insig. | 26 | 86 |
| | Mycobacterium tuberculosis H37Rv | Rv0491 | | Two component sensory transduction protein RegX3 (transcriptional regulatory protein) (probably LuxR-family) | insig. | 35 | 79 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS06635 | | sigma-54 dependent transcriptional regulator | strong | 32 | 88 |
| | Paraburkholderia graminis OAS925 | ABIE53_002091 | | PAS domain S-box-containing protein | sig. | 31 | 87 |
| | Sphingobium sp. HT1-2 | GFF1752 | | Two-component system sensor histidine kinase/response regulator hybrid | cofit | 31 | 91 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS23670 | | chemotaxis protein CheY | insig. | 30 | 80 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3698 | | Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt | strong | 29 | 91 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3698 | | Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt | strong | 29 | 91 |
| | Alteromonas macleodii MIT1002 | MIT1002_01326 | | Quorum-sensing regulator protein F | insig. | 28 | 87 |
| | Alteromonas macleodii MIT1002 | MIT1002_03810 | | putative transcriptional regulatory protein YedW | insig. | 28 | 82 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_26280 | | DNA-binding response regulator | insig. | 33 | 83 |
| | Klebsiella pneumoniae MRSN742743 | KFA93_RS06860 | | response regulator transcription factor | sig. | 33 | 83 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c01150 | | transcriptional regulatory protein ChvI | strong | 27 | 87 |
| | Pseudomonas putida KT2440 | PP_3429 | | Response regulator/sensor histidine kinase | sig. | 37 | 80 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS00885 | | response regulator | insig. | 36 | 85 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_00435 | | histidine kinase | insig. | 33 | 82 |
| | Rhodospirillum rubrum S1H | Rru_A1398 | | Response regulator receiver domain protein (CheY) (NCBI) | sig. | 31 | 87 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_09635 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 30 | 88 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1138 | | Signal transduction histidine kinase | insig. | 29 | 96 |
| | Cellulophaga baltica 18 | M666_RS17220 | | bifunctional response regulator/alkaline phosphatase family protein | no data | 29 | 91 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS23135 | | DNA-binding response regulator | insig. | 29 | 86 |
| | Ralstonia solanacearum UW163 | UW163_RS16385 | | DNA-binding response regulator | insig. | 29 | 86 |
| | Azospirillum sp. SherDot2 | MPMX19_02821 | | Sensor histidine kinase RcsC | insig. | 37 | 87 |
| | Bosea sp. OAE506 | ABIE41_RS10310 | | PAS domain S-box protein | insig. | 35 | 78 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS04415 | | sigma-54 dependent transcriptional regulator | cofit | 33 | 85 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS12830 | | PAS domain-containing protein | cofit | 33 | 87 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS12830 | | PAS domain-containing protein | strong | 33 | 87 |
| | Paraburkholderia graminis OAS925 | ABIE53_004329 | | two-component system response regulator ChvI | insig. | 33 | 85 |
| | Xanthobacter sp. DMC5 | GFF3127 | | Transcriptional regulatory protein CusR | no data | 33 | 84 |
| | Pseudomonas stutzeri RCH2 | Psest_0783 | | PAS domain S-box | insig. | 32 | 80 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1460 | | putative PAS/PAC sensor protein (RefSeq) | cofit | 31 | 87 |
| | Agrobacterium fabrum C58 | Atu4782 | | two component response regulator | strong | 40 | 55 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.4669.1 | | Transcriptional regulator NtrC family | strong | 32 | 91 |
| | Pseudomonas sp. BP01 | JOY50_RS01975 | | response regulator | insig. | 29 | 83 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2444 | | Response regulator receiver | no data | 29 | 86 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2444 | | Response regulator receiver | sig. | 29 | 86 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS39065 | | ATP-binding protein | insig. | 35 | 62 |
| | Azospirillum sp. SherDot2 | MPMX19_03597 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 32 | 90 |
| | Pseudomonas sp. SVBP6 | COO64_RS07975 | | sigma-54 dependent transcriptional regulator | insig. | 32 | 86 |
| | Pseudomonas stutzeri RCH2 | Psest_3883 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | strong | 29 | 83 |
| | Pseudomonas segetis P6 | ACVTMO_RS18790 | | response regulator transcription factor | strong | 26 | 84 |
| | Bifidobacterium breve UCC2003 | BBR_RS19170 | | DNA-binding response regulator | strong | 25 | 80 |
| | Agrobacterium fabrum C58 | Atu4306 | | two component response regulator | insig. | 34 | 88 |
| | Paraburkholderia graminis OAS925 | ABIE53_005296 | | PAS domain S-box-containing protein | sig. | 34 | 87 |
| | Pseudomonas orientalis W4I3 | QF045_RS14130 | | PAS domain-containing protein | insig. | 33 | 87 |
| | Azospirillum brasilense Sp245 | AZOBR_RS32595 | | sensor protein | insig. | 37 | 82 |
| | Pseudomonas putida KT2440 | PP_3413 | | Sensor histidine kinase/response regulator | insig. | 33 | 60 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_00725 | | chemotaxis protein CheY | insig. | 31 | 70 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_216 | | Copper-sensing two-component system response regulator CpxR | insig. | 31 | 70 |
| | Pseudomonas simiae WCS417 | PS417_13910 | | response regulator | no data | 30 | 85 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_25485 | | XRE family transcriptional regulator | insig. | 30 | 84 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2616 | | sensory box histidine kinase/response regulator (TIGR) | insig. | 30 | 87 |
| | Sinorhizobium meliloti 1021 | SMa0941 | | hypothetical protein | insig. | 30 | 86 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02954 | | Sensor kinase CckA | no data | 28 | 87 |
| | Pseudomonas putida KT2440 | PP_3762 | | Response regulator | sig. | 31 | 83 |
| | Acinetobacter baumannii LAC-4 | RR41_RS06150 | | response regulator transcription factor | insig. | 27 | 81 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS16810 | | Fis family transcriptional regulator | strong | 34 | 83 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS04640 | | sigma-54 dependent transcriptional regulator | sig. | 36 | 83 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02339 | | Sensor histidine kinase RcsC | cofit | 34 | 62 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4860 | | Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) | insig. | 33 | 80 |
| | Paraburkholderia graminis OAS925 | ABIE53_000648 | | two-component system C4-dicarboxylate transport response regulator DctD | insig. | 33 | 87 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS16220 | | transcriptional regulator | no data | 32 | 80 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04180 | | two component transcriptional regulator, winged helix family | sig. | 32 | 80 |
| | Paraburkholderia graminis OAS925 | ABIE53_003418 | | two-component system response regulator QseB | strong | 32 | 80 |
| | Pseudomonas simiae WCS417 | PS417_16930 | | histidine kinase | insig. | 32 | 84 |
| | Pseudomonas sp. BP01 | JOY50_RS24370 | | ATP-binding protein | insig. | 31 | 88 |
| | Dechlorosoma suillum PS | Dsui_1581 | | response regulator | strong | 30 | 76 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS15035 | | response regulator transcription factor | insig. | 30 | 81 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0449 | | sensor/response regulator (TIGR) | insig. | 30 | 86 |
| | Pseudomonas sp. BP01 | JOY50_RS14980 | colR | two-component system response regulator ColR | insig. | 30 | 84 |
| | Pseudomonas putida KT2440 | PP_0901 | | DNA-binding response regulator | strong | 30 | 84 |
| | Klebsiella michiganensis M5al | BWI76_RS19165 | | chemotaxis protein CheY | insig. | 29 | 84 |
| | Pseudomonas putida KT2440 | PP_1186 | | two component system DNA-binding transcriptional dual regulator | strong | 29 | 83 |
| | Shewanella oneidensis MR-1 | SO4637 | | DNA-binding response regulator (NCBI ptt file) | insig. | 29 | 87 |
| | Xanthobacter sp. DMC5 | GFF4916 | | Transcriptional regulatory protein OmpR | insig. | 29 | 79 |
| | Pseudomonas sp. SVBP6 | COO64_RS04945 | | transporter substrate-binding domain-containing protein | insig. | 28 | 84 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS17665 | | hypothetical protein | strong | 27 | 87 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03921 | | Transcriptional activator protein CzcR | cofit | 26 | 83 |
| | Pseudomonas stutzeri RCH2 | Psest_3465 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | strong | 25 | 84 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01389 | | PAS domain S-box-containing protein | insig. | 39 | 86 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_820 | | Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) | insig. | 33 | 90 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_813 | | Response regulator | strong | 31 | 73 |
| | Pseudomonas sp. SVBP6 | COO64_RS12030 | colR | two-component system response regulator ColR | insig. | 30 | 84 |
| | Sinorhizobium meliloti 1021 | SM_b20358 | | regulatory protein | insig. | 28 | 80 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4070 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | strong | 27 | 84 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4070 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | insig. | 27 | 84 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS03865 | | response regulator transcription factor | insig. | 25 | 80 |
| | Azospirillum sp. SherDot2 | MPMX19_03641 | | Sensor histidine kinase RcsC | insig. | 34 | 87 |