| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Variovorax sp. SCN45 | GFF923 | | Chromosome partition protein smc | insig. | 100 | 100 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS12450 | | histidine kinase | cofit | 39 | 85 |
| | Rhizobium sp. OAE497 | ABIE40_RS25855 | | response regulator | insig. | 39 | 81 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06214 | | PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) | insig. | 38 | 94 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS34760 | | sensor histidine kinase | sig. | 38 | 94 |
| | Rhizobium sp. OAE497 | ABIE40_RS30340 | | response regulator | insig. | 37 | 87 |
| | Paraburkholderia graminis OAS925 | ABIE53_004652 | | signal transduction histidine kinase/CheY-like chemotaxis protein | sig. | 38 | 90 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2537 | | PAS/PAC sensor hybrid histidine kinase (RefSeq) | strong | 33 | 93 |
| | Pseudomonas putida KT2440 | PP_3651 | | Sensor histidine kinase/response regulator | sig. | 33 | 88 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS07900 | | response regulator | insig. | 35 | 94 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS07900 | | response regulator | insig. | 35 | 94 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01418 | | Signal transduction histidine kinase | insig. | 35 | 91 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS18930 | | PAS domain S-box protein | insig. | 35 | 84 |
| | Pseudomonas simiae WCS417 | PS417_16940 | | chemotaxis protein CheY | insig. | 32 | 92 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS32770 | | histidine kinase | insig. | 34 | 87 |
| | Pseudomonas sp. RS175 | PFR28_01496 | | Sensor histidine kinase RcsC | insig. | 31 | 95 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS07355 | | LuxR family transcriptional regulator | no data | 29 | 100 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3196.1 | | response regulator | insig. | 37 | 86 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0581 | | response regulator/anti-anti-sigma factor (TIGR) | cofit | 32 | 90 |
| | Pseudomonas stutzeri RCH2 | Psest_4139 | | PAS domain S-box | sig. | 34 | 83 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS02235 | | response regulator | strong | 42 | 70 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_18195 | | chemotaxis protein CheY | insig. | 33 | 94 |
| | Paraburkholderia graminis OAS925 | ABIE53_004940 | | signal transduction histidine kinase | insig. | 31 | 86 |
| | Rhizobium sp. OAE497 | ABIE40_RS26335 | | sigma-54 dependent transcriptional regulator | strong | 33 | 84 |
| | Paraburkholderia graminis OAS925 | ABIE53_005219 | | PAS domain S-box-containing protein | insig. | 39 | 83 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_23910 | | response regulator | insig. | 35 | 79 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3795.1 | | Histidine kinase/response regulator hybrid protein | sig. | 32 | 87 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16265 | | Fis family transcriptional regulator | strong | 35 | 89 |
| | Variovorax sp. OAS795 | ABID97_RS05490 | | PAS domain S-box protein | sig. | 39 | 86 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_21755 | | histidine kinase | insig. | 38 | 79 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1223 | | anti-sigma-factor antagonist (RefSeq) | sig. | 33 | 90 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_27655 | | response regulator | no data | 32 | 86 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS00085 | | response regulator transcription factor | no data | 28 | 91 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS07665 | | response regulator transcription factor | no data | 28 | 91 |
| | Azospirillum sp. SherDot2 | MPMX19_03579 | | Sensor histidine kinase RcsC | insig. | 36 | 86 |
| | Variovorax sp. OAS795 | ABID97_RS26605 | | sigma-54 dependent transcriptional regulator | insig. | 35 | 85 |
| | Pseudomonas sp. DMC3 | GFF3711 | | Sensor histidine kinase RcsC | cofit | 35 | 85 |
| | Pseudomonas sp. BP01 | JOY50_RS14825 | | sigma-54 dependent transcriptional regulator | insig. | 34 | 90 |
| | Paraburkholderia graminis OAS925 | ABIE53_005282 | | PAS domain S-box-containing protein | sig. | 34 | 86 |
| | Pseudomonas putida KT2440 | PP_1066 | | C4-dicarboxylate transport transcriptional regulatory protein | strong | 34 | 90 |
| | Pseudomonas sp. SVBP6 | COO64_RS16760 | | sigma-54 dependent transcriptional regulator | insig. | 34 | 90 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4855 | | Response regulator | sig. | 33 | 86 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS20795 | | PAS domain-containing sensor histidine kinase | insig. | 33 | 87 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_18205 | | Fis family transcriptional regulator | insig. | 34 | 89 |
| | Pseudomonas sp. DMC3 | GFF5115 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 35 | 87 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_776 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 34 | 89 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS09945 | | PAS domain S-box protein | insig. | 38 | 84 |
| | Pseudomonas sp. S08-1 | OH686_13325 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | cofit | 37 | 88 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3913 | | Helix-turn-helix, Fis-type | insig. | 34 | 87 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3913 | | Helix-turn-helix, Fis-type | insig. | 34 | 87 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5565 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 34 | 89 |
| | Azospirillum sp. SherDot2 | MPMX19_04512 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | insig. | 34 | 86 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS08745 | | response regulator transcription factor | no data | 28 | 91 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2871 | | Histidine kinase/response regulator hybrid protein | insig. | 36 | 82 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4775 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | strong | 34 | 89 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS04620 | | PAS domain-containing sensor histidine kinase | insig. | 33 | 91 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5636 | | Histidine kinase/response regulator hybrid protein | sig. | 36 | 82 |
| | Pseudomonas sp. RS175 | PFR28_03376 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | sig. | 34 | 89 |
| | Agrobacterium fabrum C58 | Atu0629 | | two component response regulator | insig. | 33 | 81 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_03180 | | transcriptional regulatory protein RprY | no data | 28 | 91 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2165 | | two-component system response regulator (NCBI ptt file) | no data | 28 | 91 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_6044 | | Sensor histidine kinase/response regulator | sig. | 33 | 92 |
| | Variovorax sp. SCN45 | GFF1691 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | insig. | 33 | 87 |
| | Pseudomonas sp. RS175 | PFR28_02946 | | Sensor histidine kinase RcsC | insig. | 33 | 92 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_07640 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 33 | 88 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS28960 | | histidine kinase | insig. | 38 | 83 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2044 | | Histidine kinase/response regulator hybrid protein | strong | 35 | 82 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS19025 | | sigma-54 dependent transcriptional regulator | strong | 34 | 89 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_06350 | | Fis family transcriptional regulator | strong | 34 | 89 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS53150 | | sigma-54 dependent transcriptional regulator | strong | 34 | 89 |
| | Ralstonia solanacearum GMI1000 | RS_RS01635 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 33 | 88 |
| | Pseudomonas sp. DMC3 | GFF1553 | | Sensor histidine kinase RcsC | insig. | 32 | 87 |
| | Alteromonas macleodii MIT1002 | MIT1002_00654 | | Signal transduction histidine-protein kinase BarA | insig. | 32 | 88 |
| | Azospirillum brasilense Sp245 | AZOBR_RS24025 | | transcriptional regulator | strong | 29 | 87 |
| | Rhizobium sp. OAE497 | ABIE40_RS27400 | | PAS domain-containing sensor histidine kinase | insig. | 36 | 87 |
| | Dechlorosoma suillum PS | Dsui_3486 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | cofit | 34 | 94 |
| | Pseudomonas orientalis W4I3 | QF045_RS17035 | | response regulator | cofit | 33 | 87 |
| | Pseudomonas segetis P6 | ACVTMO_RS01525 | | response regulator | insig. | 33 | 86 |
| | Pseudomonas stutzeri RCH2 | Psest_4347 | | PAS domain S-box | insig. | 29 | 95 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS18990 | | response regulator | insig. | 37 | 65 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1607.1 | | Histidine kinase/response regulator hybrid protein | insig. | 37 | 94 |
| | Azospirillum sp. SherDot2 | MPMX19_05885 | | Sensor histidine kinase RcsC | insig. | 37 | 83 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01294 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | strong | 34 | 88 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF610 | | Putative sensory histidine kinase YfhA | insig. | 32 | 98 |
| | Ralstonia solanacearum GMI1000 | RS_RS24130 | | DNA-binding response regulator | insig. | 32 | 83 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0681 | | sensor histidine kinase/response regulator (TIGR) | strong | 31 | 87 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS16930 | | chemotaxis protein CheY | insig. | 39 | 65 |
| | Azospirillum brasilense Sp245 | AZOBR_RS31670 | | hypothetical protein | insig. | 34 | 91 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS10795 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 33 | 88 |
| | Ralstonia solanacearum UW163 | UW163_RS02785 | | sigma-54-dependent Fis family transcriptional regulator | insig. | 33 | 88 |
| | Pseudomonas orientalis W4I3 | QF045_RS08460 | | sigma-54 dependent transcriptional regulator | cofit | 33 | 97 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS17290 | | DNA-binding response regulator | insig. | 32 | 83 |
| | Ralstonia solanacearum UW163 | UW163_RS21855 | | DNA-binding response regulator | insig. | 32 | 83 |
| | Agrobacterium fabrum C58 | Atu4047 | | two component sensor kinase/response regulator hybrid | insig. | 31 | 97 |
| | Pseudomonas sp. RS175 | PFR28_01718 | | Response regulator receiver protein CpdR | sig. | 31 | 97 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS03980 | | Fis family transcriptional regulator | strong | 36 | 90 |
| | Pseudomonas simiae WCS417 | PS417_05535 | | Fis family transcriptional regulator | strong | 33 | 89 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS12850 | | LuxR family transcriptional regulator | no data | 31 | 96 |
| | Paraburkholderia graminis OAS925 | ABIE53_002795 | | FixJ family two-component response regulator | no data | 31 | 96 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1292 | | multi-sensor hybrid histidine kinase | insig. | 31 | 92 |