Homologs of GFF872 from Sphingobium sp. HT1-2

LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20)
SEED: Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase E

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF872 LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20) cofit 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_1070 pseudouridine synthase insig. 82 97
o Pseudomonas sp. RS175 PFR28_03839 Ribosomal large subunit pseudouridine synthase E insig. 71 97
o Pseudomonas fluorescens FW300-N2C3 AO356_15455 pseudouridine synthase insig. 70 97
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1389 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) insig. 70 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5028 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) insig. 70 97
o Pseudomonas fluorescens FW300-N2E3 AO353_06330 pseudouridine synthase insig. 69 97
o Pseudomonas sp. BP01 JOY50_RS21765 pseudouridine synthase insig. 71 97
o Pseudomonas putida KT2440 PP_4778 23S rRNA pseudouridine 2457 synthase insig. 71 97
o Pseudomonas fluorescens SBW25 PFLU_RS26510 pseudouridine synthase insig. 70 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS26510 pseudouridine synthase insig. 70 97
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2722 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) insig. 69 97
o Pseudomonas sp. DMC3 GFF3909 Ribosomal large subunit pseudouridine synthase E insig. 69 97
o Pseudomonas syringae pv. syringae B728a Psyr_4336 ribosomal large subunit pseudouridine synthase E insig. 69 97
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4336 ribosomal large subunit pseudouridine synthase E insig. 69 97
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05064 Ribosomal large subunit pseudouridine synthase E insig. 69 97
o Pseudomonas orientalis W4I3 QF045_RS26865 pseudouridine synthase insig. 69 97
o Pseudomonas simiae WCS417 PS417_24580 pseudouridine synthase sig. 68 97
o Pseudomonas stutzeri RCH2 Psest_0568 pseudouridine synthase insig. 69 97
o Pseudomonas sp. SVBP6 COO64_RS15465 pseudouridine synthase insig. 68 97
o Pseudomonas sp. S08-1 OH686_08840 LSU rRNA pseudouridine(2457) synthase insig. 69 97
o Castellaniella sp019104865 MT123 ABCV34_RS13900 pseudouridine synthase insig. 69 95
o Pseudomonas aeruginosa MRSN321 DY961_RS13015 pseudouridine synthase strong 70 97
o Pseudomonas aeruginosa PA14 IKLFDK_20470 Ribosomal large subunit pseudouridine synthase E insig. 70 97
o Pseudomonas aeruginosa PUPa3 DQ20_RS48340 pseudouridine synthase sig. 70 97
o Lysobacter sp. OAE881 ABIE51_RS00615 pseudouridine synthase insig. 71 94
o Azospirillum sp. SherDot2 MPMX19_00077 Ribosomal large subunit pseudouridine synthase E insig. 70 96
o Pseudomonas segetis P6 MPMX49_01083 Ribosomal large subunit pseudouridine synthase E insig. 68 94
o Phaeobacter inhibens DSM 17395 PGA1_c16410 ribosomal large subunit pseudouridine synthase E insig. 65 97
o Azospirillum brasilense Sp245 AZOBR_RS03795 Pseudouridine synthase insig. 67 94
  Shewanella sp. ANA-3 Shewana3_1749 ribosomal large subunit pseudouridine synthase E (RefSeq) insig. 61 93
o Alteromonas macleodii MIT1002 MIT1002_01829 Ribosomal large subunit pseudouridine synthase E insig. 61 94
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS09950 pseudouridine synthase insig. 69 93
o Rhodanobacter denitrificans MT42 LRK55_RS09590 pseudouridine synthase insig. 68 93
  Vibrio cholerae E7946 ATCC 55056 CSW01_05785 23S rRNA pseudouridine synthase E insig. 62 94
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS02720 pseudouridine synthase insig. 67 94
o Rhodospirillum rubrum S1H Rru_A1939 Pseudouridine synthase, Rsu (NCBI) insig. 64 98
o Magnetospirillum magneticum AMB-1 AMB_RS12420 pseudouridine synthase cofit 61 95
  Shewanella loihica PV-4 Shew_1562 pseudouridylate synthase (RefSeq) insig. 61 95
  Dechlorosoma suillum PS Dsui_3293 pseudouridine synthase family protein insig. 62 95
o Shewanella amazonensis SB2B Sama_2060 pseudouridylate synthase (RefSeq) insig. 62 94
o Enterobacter asburiae PDN3 EX28DRAFT_1795 pseudouridine synthase insig. 61 94
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.351.1 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 66 93
o Rhodanobacter sp. FW510-T8 OKGIIK_16200 Pseudouridine synthase insig. 69 93
  Acidovorax sp. GW101-3H11 Ac3H11_10 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) insig. 65 95
o Variovorax sp. SCN45 GFF6670 LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20) insig. 68 93
o Enterobacter sp. TBS_079 MPMX20_01819 Ribosomal large subunit pseudouridine synthase E insig. 60 95
  Cupriavidus basilensis FW507-4G11 RR42_RS17140 pseudouridine synthase insig. 66 94
o Dinoroseobacter shibae DFL-12 Dshi_2908 pseudouridine synthase (RefSeq) insig. 67 93
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS13170 pseudouridine synthase insig. 64 93
o Escherichia coli BL21 ECD_01133 23S rRNA pseudouridine(2457) synthase insig. 60 95
o Escherichia coli ECRC100 OKFHMN_00755 rluE 23S rRNA pseudouridine(2457) synthase RluE cofit 60 95
o Escherichia coli ECRC101 MCAODC_22330 rluE 23S rRNA pseudouridine(2457) synthase RluE insig. 60 95
o Escherichia coli ECRC102 NIAGMN_24900 rluE 23S rRNA pseudouridine(2457) synthase RluE cofit 60 95
o Escherichia coli ECRC98 JDDGAC_06610 rluE 23S rRNA pseudouridine(2457) synthase RluE insig. 60 95
o Escherichia coli ECRC99 KEDOAH_24840 rluE 23S rRNA pseudouridine(2457) synthase RluE no data 60 95
o Kangiella aquimarina DSM 16071 B158DRAFT_1837 ribosomal large subunit pseudouridine synthase E (EC 5.4.99.-) insig. 57 94
o Escherichia coli ECOR27 NOLOHH_20890 rluE 23S rRNA pseudouridine(2457) synthase RluE insig. 59 95
o Escherichia coli ECRC62 BNILDI_19055 rluE 23S rRNA pseudouridine(2457) synthase RluE insig. 59 95
o Escherichia coli BW25113 b1135 ymfC orf, hypothetical protein (VIMSS) sig. 59 95
o Pectobacterium carotovorum WPP14 HER17_RS11615 23S rRNA pseudouridine(2457) synthase RluE insig. 57 94
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02533 Ribosomal large subunit pseudouridine synthase E insig. 59 95
o Pantoea sp. MT58 IAI47_11905 23S rRNA pseudouridine(2457) synthase RluE insig. 58 96
o Escherichia coli ECOR38 HEPCGN_24230 rluE 23S rRNA pseudouridine(2457) synthase RluE insig. 59 95
o Rahnella sp. WP5 EX31_RS24585 23S rRNA pseudouridine(2457) synthase RluE insig. 56 96
o Synechococcus elongatus PCC 7942 Synpcc7942_1514 Pseudouridine synthase, Rsu sig. 58 96
o Klebsiella michiganensis M5al BWI76_RS11325 23S rRNA pseudouridine synthase E no data 60 94
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3421 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) insig. 59 94
o Escherichia fergusonii Becca EFB2_02840 Ribosomal large subunit pseudouridine synthase E insig. 58 95
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS19480 23S rRNA pseudouridine(2457) synthase RluE cofit 57 94
o Klebsiella pneumoniae MKP103 KDGMDA_18915 23S rRNA pseudouridine(2457) synthase RluE insig. 59 94
o Dickeya dadantii 3937 DDA3937_RS11475 23S rRNA pseudouridine(2457) synthase RluE insig. 57 94
  Erwinia tracheiphila SCR3 LU632_RS14565 rluE 23S rRNA pseudouridine(2457) synthase RluE insig. 57 94
o Serratia liquefaciens MT49 IAI46_10455 23S rRNA pseudouridine(2457) synthase RluE insig. 56 94
o Dickeya dianthicola ME23 DZA65_RS11855 23S rRNA pseudouridine(2457) synthase RluE insig. 57 94
o Erwinia amylovora T8 OLJFJH_15245 23S rRNA pseudouridine(2457) synthase RluE insig. 57 94
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_00355 rluE 23S rRNA pseudouridine(2457) synthase RluE cofit 57 94
o Dickeya dianthicola 67-19 HGI48_RS11520 23S rRNA pseudouridine(2457) synthase RluE insig. 57 94
o Methylophilus sp. DMC18 GFF278 Ribosomal large subunit pseudouridine synthase E insig. 57 94
o Herbaspirillum seropedicae SmR1 HSERO_RS07010 pseudouridine synthase insig. 58 94
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02130 pseudouridine synthase sig. 56 94
o Synechocystis sp000284455 PCC 6803 SGL_RS01880 pseudouridine synthase cofit 52 94
o Paraburkholderia graminis OAS925 ABIE53_003318 23S rRNA pseudouridine2457 synthase insig. 57 95
  Marinobacter adhaerens HP15 HP15_2084 RNA pseudouridylate synthase insig. 64 76
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04086 23S rRNA pseudouridine2457 synthase insig. 60 87
o Burkholderia phytofirmans PsJN BPHYT_RS15735 pseudouridine synthase insig. 60 87
o Paraburkholderia sabiae LMG 24235 QEN71_RS02975 pseudouridine synthase insig. 58 86
  Acinetobacter baumannii LAC-4 RR41_RS05115 rRNA large subunit pseudouridine synthase E insig. 52 97
  Acinetobacter radioresistens SK82 MPMX26_01011 hypothetical protein insig. 56 92
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1556 pseudouridine synthase insig. 52 95
  Shewanella loihica PV-4 Shew_0814 pseudouridine synthase (RefSeq) insig. 41 95
o Cellulophaga baltica 18 M666_RS16840 pseudouridine synthase insig. 41 94
  Rahnella sp. WP5 EX31_RS19195 16S rRNA pseudouridine(516) synthase RsuA insig. 40 94
  Synechococcus elongatus PCC 7942 Synpcc7942_1010 ribosomal large subunit pseudouridine synthase B strong 41 96
  Fusobacterium nucleatum SB010 HUW76_04625 rRNA pseudouridine synthase cofit 37 93
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3753 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) insig. 41 94
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_16035 rsuA 16S rRNA pseudouridine(516) synthase RsuA cofit 39 96
  Erwinia tracheiphila SCR3 LU632_RS17595 rsuA 16S rRNA pseudouridine(516) synthase RsuA insig. 39 96
  Escherichia coli ECOR38 HEPCGN_22625 rsuA 16S rRNA pseudouridine(516) synthase RsuA insig. 41 94
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS00670 16S rRNA pseudouridine(516) synthase RsuA cofit 40 94