Homologs of GFF7293 from Variovorax sp. SCN45

Ribosome hibernation promoting factor Hpf
SEED: Ribosome hibernation protein YhbH
KEGG: putative sigma-54 modulation protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF7293 Ribosome hibernation promoting factor Hpf cofit 100 100
o Variovorax sp. OAS795 ABID97_RS04490 ribosome-associated translation inhibitor RaiA insig. 96 100
o Acidovorax sp. GW101-3H11 Ac3H11_681 Ribosome hibernation protein YhbH sig. 91 98
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2612 Ribosome hibernation protein YhbH strong 78 100
o Paraburkholderia graminis OAS925 ABIE53_000717 putative sigma-54 modulation protein strong 66 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS01750 ribosome-associated translation inhibitor RaiA insig. 68 94
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P insig. 64 97
o Burkholderia phytofirmans PsJN BPHYT_RS02900 ribosome hibernation promoting factor sig. 64 97
o Cupriavidus basilensis FW507-4G11 RR42_RS02080 ribosome hibernation promoting factor sig. 67 92
o Ralstonia sp. UNC404CL21Col ABZR87_RS07055 ribosome-associated translation inhibitor RaiA strong 65 92
o Ralstonia solanacearum PSI07 RPSI07_RS22135 ribosomal subunit interface protein strong 65 92
o Ralstonia solanacearum GMI1000 RS_RS02015 ribosomal subunit interface protein strong 64 92
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS11165 ribosomal subunit interface protein strong 64 92
o Ralstonia solanacearum UW163 UW163_RS02415 ribosomal subunit interface protein sig. 64 92
o Dechlorosoma suillum PS Dsui_0703 ribosomal subunit interface protein strong 60 97
o Methylophilus sp. DMC18 GFF2268 Ribosome hibernation promoting factor cofit 54 93
o Shewanella loihica PV-4 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) strong 46 92
o Castellaniella sp019104865 MT123 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA cofit 49 98
o Pseudomonas stutzeri RCH2 Psest_3314 ribosomal subunit interface protein sig. 50 98
o Shewanella sp. ANA-3 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) strong 48 92
o Shewanella oneidensis MR-1 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) sig. 48 92
o Shewanella amazonensis SB2B Sama_3089 ribosomal subunit interface protein (RefSeq) strong 46 92
o Alteromonas macleodii MIT1002 MIT1002_00826 Ribosome hibernation promoting factor strong 46 92
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 48 90
o Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 50 88
o Pseudomonas aeruginosa MRSN321 DY961_RS24160 raiA;go_component=ribosome|0005840||IEA,cytosolic ribosome-associated translation inhibitor RaiA strong 45 98
o Pseudomonas aeruginosa PA14 IKLFDK_01765 Sigma 54 modulation protein / S30EA ribosomal protein strong 45 98
o Pseudomonas aeruginosa PUPa3 DQ20_RS56620 raiA;go_component=ribosome|0005840||IEA,cytosolic ribosome-associated translation inhibitor RaiA strong 45 98
o Pseudomonas segetis P6 ACVTMO_RS19125 hpf ribosome hibernation-promoting factor, HPF/YfiA family strong 45 98
o Marinobacter adhaerens HP15 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA cofit 44 98
o Kangiella aquimarina DSM 16071 B158DRAFT_2079 ribosomal subunit interface protein insig. 48 92
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 47 90
o Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 47 90
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 47 90
o Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 47 90
o Rahnella sp. WP5 EX31_RS12395 ribosome hibernation promoting factor cofit 46 92
o Pseudomonas sp. DMC3 GFF1827 Ribosome hibernation promoting factor insig. 45 90
o Pseudomonas sp. RS175 PFR28_00172 Ribosome hibernation promoting factor sig. 47 90
o Pseudomonas syringae pv. syringae B728a Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 46 90
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 46 90
o Klebsiella pneumoniae MKP103 KDGMDA_06085 ribosome hibernation promoting factor insig. 43 92
o Pseudomonas simiae WCS417 PS417_04340 ribosome hibernation promoting factor HPF strong 44 88
o Klebsiella michiganensis M5al BWI76_RS25270 ribosome hibernation promoting factor sig. 42 92
o Pectobacterium carotovorum WPP14 HER17_RS20065 ribosome hibernation promoting factor cofit 45 92
o Pseudomonas fluorescens SBW25 PFLU_RS04395 ribosome-associated translation inhibitor RaiA cofit 45 88
o Pseudomonas fluorescens SBW25-INTG PFLU_RS04395 ribosome-associated translation inhibitor RaiA strong 45 88
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01074 Ribosome hibernation promoting factor cofit 45 88
o Pseudomonas orientalis W4I3 QF045_RS07330 ribosome-associated translation inhibitor RaiA no data 45 88
o Pseudomonas putida KT2440 PP_0951 Ribosome hibernation promoting factor strong 44 90
o Pseudomonas sp. SVBP6 COO64_RS04280 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 43 91
o Serratia liquefaciens MT49 IAI46_22475 ribosome hibernation promoting factor cofit 42 92
o Pseudomonas sp. BP01 JOY50_RS11125 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 40 98
o Dickeya dianthicola 67-19 HGI48_RS01440 ribosome hibernation promoting factor insig. 45 92
o Dickeya dianthicola ME23 DZA65_RS01505 ribosome hibernation promoting factor insig. 45 92
o Erwinia amylovora T8 OLJFJH_07065 ribosome hibernation promoting factor sig. 42 92
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09355 ribosome hibernation promoting factor cofit 39 92
o Pantoea sp. MT58 IAI47_17190 ribosome hibernation promoting factor insig. 39 92
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 40 92
o Vibrio cholerae E7946 ATCC 55056 CSW01_12820 ribosome hibernation promoting factor insig. 44 92
o Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 43 92
o Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers sig. 39 92
o Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 39 92
o Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor insig. 39 92
o Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 39 92
o Escherichia coli ECRC100 OKFHMN_17935 Ribosome hibernation promoting factor insig. 39 92
o Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor insig. 39 92
o Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 39 92
o Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor strong 39 92
o Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor cofit 39 92
o Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 39 92
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 39 92
o Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 39 92
o Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 39 92
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13735 hpf ribosome hibernation promoting factor insig. 39 92
o Erwinia tracheiphila SCR3 LU632_RS21285 hpf ribosome hibernation promoting factor insig. 39 92
o Lysobacter sp. OAE881 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA cofit 40 94
o Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 38 92
o Rhodanobacter sp. FW510-T8 OKGIIK_02260 raiA ribosomal subunit interface protein strong 39 94
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1661.1 Ribosome hibernation protein YhbH insig. 43 93
o Enterobacter asburiae PDN3 EX28DRAFT_3257 ribosomal subunit interface protein cofit 36 92
o Rhodanobacter denitrificans MT42 LRK55_RS12570 ribosome-associated translation inhibitor RaiA insig. 37 94
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS12870 ribosome-associated translation inhibitor RaiA strong 37 94
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS15710 ribosome-associated translation inhibitor RaiA insig. 37 94
  Synechococcus elongatus PCC 7942 Synpcc7942_2352 lrtA sigma 54 modulation protein / SSU ribosomal protein S30P insig. 36 91
o Acinetobacter baumannii LAC-4 RR41_RS15825 ribosome-associated translation inhibitor RaiA sig. 31 86
o Acinetobacter radioresistens SK82 MPMX26_02591 Ribosome hibernation promoting factor no data 32 86
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA sig. 33 94
  Synechocystis sp000284455 PCC 6803 SGL_RS12505 ribosome-associated translation inhibitor RaiA cofit 33 97
  Pectobacterium carotovorum WPP14 HER17_RS05390 ribosome-associated translation inhibitor RaiA cofit 32 90
  Serratia liquefaciens MT49 IAI46_03975 ribosome-associated translation inhibitor RaiA strong 31 86
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS10880 ribosome-associated translation inhibitor RaiA strong 29 89
  Shewanella sp. ANA-3 Shewana3_1133 SSU ribosomal protein S30P / sigma 54 modulation protein (RefSeq) strong 33 88
  Rahnella sp. WP5 EX31_RS07580 ribosome-associated translation inhibitor RaiA insig. 29 83
  Shewanella oneidensis MR-1 SO3422 yfiA-2 ribosomal subunit interface protein (NCBI ptt file) sig. 32 88
  Dickeya dadantii 3937 DDA3937_RS16120 ribosome-associated translation inhibitor RaiA insig. 31 86
  Klebsiella michiganensis M5al BWI76_RS21460 translation inhibitor protein RaiA insig. 30 86
  Klebsiella pneumoniae MKP103 KDGMDA_02150 ribosome-associated translation inhibitor RaiA sig. 30 86
  Shewanella loihica PV-4 Shew_1073 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 28 94
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4180 Ribosome hibernation protein YfiA insig. 29 86
  Dickeya dianthicola 67-19 HGI48_RS16245 ribosome-associated translation inhibitor RaiA insig. 30 86