| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Variovorax sp. SCN45 | GFF69 | | Two-component transcriptional response regulator, LuxR family | insig. | 100 | 100 |
| o | Variovorax sp. OAS795 | ABID97_RS19165 | | response regulator transcription factor | no data | 79 | 97 |
| | Variovorax sp. SCN45 | GFF1411 | | Two-component transcriptional response regulator, LuxR family | insig. | 68 | 95 |
| | Variovorax sp. SCN45 | GFF6941 | | Two-component transcriptional response regulator, LuxR family | no data | 50 | 88 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_3359 | | response regulatory protein | sig. | 43 | 83 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS34855 | | LuxR family transcriptional regulator | insig. | 39 | 87 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3174 | | response regulator, NarL-family | insig. | 39 | 83 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS16425 | | response regulator transcription factor | insig. | 37 | 86 |
| | Variovorax sp. SCN45 | GFF4452 | | Two-component transcriptional response regulator, LuxR family | insig. | 36 | 88 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF5425 | | response regulator, NarL-family | insig. | 41 | 83 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS08030 | | DNA-binding response regulator | insig. | 36 | 86 |
| | Ralstonia solanacearum UW163 | UW163_RS05600 | | DNA-binding response regulator | insig. | 36 | 86 |
| | Ralstonia solanacearum GMI1000 | RS_RS15885 | | DNA-binding response regulator | insig. | 36 | 86 |
| | Variovorax sp. SCN45 | GFF1180 | | hypothetical protein | insig. | 37 | 83 |
| | Bosea sp. OAE506 | ABIE41_RS15410 | | response regulator transcription factor | insig. | 41 | 83 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS06050 | | DNA-binding response regulator | cofit | 36 | 86 |
| | Variovorax sp. OAS795 | ABID97_RS06320 | | response regulator transcription factor | sig. | 38 | 83 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS11185 | | response regulator transcription factor | insig. | 34 | 86 |
| | Variovorax sp. SCN45 | GFF3032 | | Two-component transcriptional response regulator, LuxR family | insig. | 36 | 90 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF5823 | | Nitrate/nitrite response regulator protein | no data | 31 | 85 |
| | Variovorax sp. SCN45 | GFF6647 | | Two-component transcriptional response regulator, LuxR family | insig. | 36 | 86 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_09180 | | DNA-binding response regulator | insig. | 30 | 83 |
| | Lysobacter sp. OAE881 | ABIE51_RS14590 | | response regulator transcription factor | sig. | 32 | 81 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3685 | | DNA-binding response regulator, LuxR family | insig. | 31 | 84 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS11330 | | response regulator transcription factor | insig. | 34 | 84 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS11600 | | response regulator transcription factor | insig. | 34 | 84 |
| | Pantoea sp. MT58 | IAI47_04245 | | two-component system response regulator NarL | sig. | 32 | 82 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_19985 | | two-component system response regulator NarL | insig. | 32 | 84 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS08760 | | XRE family transcriptional regulator | no data | 29 | 83 |
| | Variovorax sp. OAS795 | ABID97_RS22515 | | response regulator transcription factor | strong | 28 | 84 |
| | Variovorax sp. SCN45 | GFF3038 | | hypothetical protein | insig. | 37 | 70 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS33915 | | two-component system response regulator NarL | insig. | 32 | 80 |
| | Pseudomonas sp. SVBP6 | COO64_RS14210 | narL | two-component system response regulator NarL | insig. | 31 | 81 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS16725 | | two-component system response regulator NarL | insig. | 31 | 82 |
| | Methylophilus sp. DMC18 | GFF2498 | | Transcriptional regulatory protein RcsB | insig. | 36 | 66 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1296 | | DNA-binding response regulator, LuxR family | strong | 32 | 83 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS11285 | | response regulator transcription factor | strong | 29 | 83 |
| | Lysobacter sp. OAE881 | ABIE51_RS10320 | | response regulator transcription factor | insig. | 31 | 84 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_25185 | | hypothetical protein | sig. | 32 | 82 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS18195 | | XRE family transcriptional regulator | insig. | 31 | 83 |
| o | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS08650 | | response regulator transcription factor | insig. | 29 | 81 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3859.1 | | Two-component system regulatory protein | sig. | 32 | 81 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS21285 | | DNA-binding response regulator | insig. | 31 | 81 |
| | Variovorax sp. SCN45 | GFF6693 | | Two-component transcriptional response regulator, LuxR family | insig. | 33 | 91 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS14195 | | response regulator transcription factor | no data | 30 | 83 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS14480 | | response regulator transcription factor | strong | 30 | 83 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS14100 | | response regulator transcription factor | insig. | 30 | 83 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_725 | | Nitrate/nitrite response regulator protein | strong | 32 | 80 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03428 | | Nitrate/nitrite response regulator protein NarL | cofit | 32 | 81 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4833 | | DNA-binding response regulator, LuxR family | sig. | 31 | 84 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS18540 | | DNA-binding response regulator | cofit | 30 | 83 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS16955 | | response regulator transcription factor | insig. | 33 | 84 |
| | Pseudomonas simiae WCS417 | PS417_19630 | | LuxR family transcriptional regulator | cofit | 31 | 83 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3272 | | DNA-binding response regulator, LuxR family | insig. | 31 | 81 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS21335 | | response regulator transcription factor | sig. | 30 | 83 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_03330 | citB | DNA-binding response regulator | insig. | 30 | 83 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS21600 | | response regulator transcription factor | insig. | 30 | 83 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS21600 | | response regulator transcription factor | sig. | 30 | 83 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS08905 | | XRE family transcriptional regulator | insig. | 32 | 83 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04126 | | Transcriptional regulatory protein DegU | cofit | 30 | 83 |
| | Pseudomonas stutzeri RCH2 | Psest_0662 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 31 | 83 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_26265 | | LuxR family transcriptional regulator | no data | 32 | 84 |
| | Pseudomonas sp. RS175 | PFR28_01628 | | Nitrate/nitrite response regulator protein NarL | insig. | 31 | 82 |
| | Pseudomonas simiae WCS417 | PS417_15740 | | hypothetical protein | insig. | 31 | 81 |
| | Methylophilus sp. DMC18 | GFF606 | | Nitrate/nitrite response regulator protein NarL | insig. | 30 | 81 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_232 | | DNA-binding response regulator, LuxR family | insig. | 30 | 65 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS06400 | | response regulator transcription factor | strong | 28 | 83 |
| | Pseudomonas stutzeri RCH2 | Psest_3491 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | no data | 32 | 70 |
| | Pseudomonas sp. RS175 | PFR28_01618 | | Oxygen regulatory protein NreC | strong | 31 | 83 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_02965 | | LuxR family transcriptional regulator | insig. | 30 | 83 |
| | Pseudomonas sp. RS175 | PFR28_01009 | | Transcriptional regulatory protein DegU | insig. | 31 | 83 |
| | Pseudomonas putida KT2440 | PP_2126 | | DNA-binding response regulator, LuxR family | insig. | 31 | 83 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2418 | | DNA-binding response regulator, LuxR family | insig. | 30 | 83 |
| | Ralstonia solanacearum GMI1000 | RS_RS01435 | | DNA-binding response regulator | strong | 28 | 83 |
| | Pseudomonas sp. BP01 | JOY50_RS24990 | | response regulator transcription factor | insig. | 31 | 84 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF1492 | | Nitrate/nitrite response regulator protein | no data | 32 | 81 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS06675 | | DNA-binding response regulator | insig. | 30 | 83 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS10600 | | DNA-binding response regulator | strong | 28 | 83 |
| | Ralstonia solanacearum UW163 | UW163_RS02980 | | DNA-binding response regulator | strong | 28 | 83 |
| | Pseudomonas sp. DMC3 | GFF4570 | | Transcriptional regulatory protein DegU | insig. | 30 | 83 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS22720 | | DNA-binding response regulator | strong | 28 | 83 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1128 | | Two-component response regulator | insig. | 31 | 84 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_25670 | | regulator | sig. | 31 | 83 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_06455 | | DNA-binding response regulator | insig. | 29 | 84 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5741 | | Nitrate/nitrite response regulator protein | no data | 31 | 81 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22075 | | hypothetical protein | strong | 29 | 80 |
| | Methylophilus sp. DMC18 | GFF1242 | | Response regulator UvrY | cofit | 27 | 84 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_25245 | | regulator | strong | 31 | 84 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS34135 | | two-component system response regulator NarL | insig. | 29 | 83 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_30010 | | transcriptional regulator | insig. | 29 | 80 |
| | Pseudomonas sp. RS175 | PFR28_01868 | | Transcriptional regulatory protein DegU | no data | 31 | 84 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_19270 | | LuxR family transcriptional regulator | strong | 30 | 83 |
| | Pseudomonas stutzeri RCH2 | Psest_2260 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | strong | 29 | 83 |
| | Pantoea sp. MT58 | IAI47_05315 | | response regulator | sig. | 32 | 79 |
| | Escherichia fergusonii Becca | EFB2_01663 | | Nitrate/nitrite response regulator protein NarL | insig. | 29 | 81 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS12820 | | nitrate/nitrite response regulator protein NarP | no data | 29 | 81 |
| | Dechlorosoma suillum PS | Dsui_3469 | | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | cofit | 29 | 83 |
| | Paraburkholderia graminis OAS925 | ABIE53_005345 | | two-component system nitrate/nitrite response regulator NarL | no data | 29 | 83 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS11480 | | response regulator | insig. | 28 | 83 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS11480 | | response regulator | sig. | 28 | 83 |