| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Xanthobacter sp. DMC5 | GFF2001 | | HTH-type transcriptional activator RhaS | insig. | 100 | 100 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_3718 | | transcriptional regulator, AraC family (RefSeq) | cofit | 58 | 99 |
| o | Azospirillum sp. SherDot2 | MPMX19_03386 | | HTH-type transcriptional activator RhaR | insig. | 53 | 98 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_26625 | | DNA-binding protein | no data | 44 | 98 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3708 | | transcriptional regulator, AraC family (RefSeq) | insig. | 36 | 97 |
| o | Bosea sp. OAE506 | ABIE41_RS18730 | | helix-turn-helix domain-containing protein | insig. | 33 | 99 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_97 | | Transcriptional regulator, AraC family | insig. | 49 | 48 |
| o | Variovorax sp. OAS795 | ABID97_RS27260 | | AraC family transcriptional regulator | no data | 28 | 99 |
| | Bosea sp. OAE506 | ABIE41_RS18945 | | AraC family transcriptional regulator | insig. | 43 | 36 |
| | Pseudomonas sp. DMC3 | GFF1052 | | HTH-type transcriptional activator RhaR | cofit | 39 | 37 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS01165 | | helix-turn-helix transcriptional regulator | insig. | 34 | 38 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS34765 | | AraC family transcriptional regulator | insig. | 33 | 49 |
| | Lysobacter sp. OAE881 | ABIE51_RS03340 | | AraC family transcriptional regulator | insig. | 31 | 51 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_13545 | | AraC family transcriptional regulator | sig. | 33 | 49 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3667 | | transcriptional regulator (NCBI ptt file) | insig. | 34 | 37 |
| | Paraburkholderia graminis OAS925 | ABIE53_005062 | | AraC family transcriptional regulator | sig. | 34 | 54 |
| | Enterobacter sp. TBS_079 | MPMX20_02552 | | HTH-type transcriptional activator RhaR | insig. | 38 | 36 |
| | Pseudomonas stutzeri RCH2 | Psest_2061 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 37 | 36 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS00290 | | helix-turn-helix transcriptional regulator | insig. | 33 | 38 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1614 | | transcriptional regulator, AraC family (RefSeq) | insig. | 41 | 33 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT4137 | | two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) | insig. | 38 | 33 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS03730 | | AraC family transcriptional regulator | insig. | 32 | 49 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4154 | | Transcriptional regulator, AraC family | insig. | 38 | 36 |
| | Pseudomonas sp. RS175 | PFR28_01504 | | HTH-type transcriptional activator RhaR | insig. | 37 | 36 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS05450 | | AraC family transcriptional regulator | no data | 35 | 41 |
| | Sinorhizobium meliloti 1021 | SMc01610 | | transcriptional regulator | insig. | 40 | 36 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS29955 | | AraC family transcriptional regulator | insig. | 40 | 38 |
| | Sinorhizobium meliloti 1021 | SMa0319 | | AraC family transcriptional regulator | insig. | 36 | 36 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1249 | | Transcriptional regulator, AraC family | insig. | 33 | 52 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02999 | | transcriptional regulator, AraC family | insig. | 31 | 50 |
| | Rhodopseudomonas palustris CGA009 | TX73_006805 | | AraC family transcriptional regulator | insig. | 34 | 38 |
| | Pseudomonas stutzeri RCH2 | Psest_0723 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 29 | 50 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04371 | | response regulator receiver domain protein | insig. | 34 | 30 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS13380 | mdrR1;inference=COORDINATES | transcriptional regulator MdrR1 | insig. | 37 | 35 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_20095 | | transcriptional regulator MdrR1 | insig. | 37 | 35 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS48680 | mdrR1;inference=COORDINATES | transcriptional regulator MdrR1 | strong | 37 | 35 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3172 | | two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) | insig. | 33 | 34 |
| | Agrobacterium fabrum C58 | Atu4659 | | AraC family transcriptional regulator | strong | 37 | 37 |
| | Rhizobium sp. OAE497 | ABIE40_RS12690 | | AraC family transcriptional regulator | insig. | 27 | 92 |
| | Enterobacter sp. TBS_079 | MPMX20_02241 | | HTH-type transcriptional activator RhaS | sig. | 36 | 35 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.2124.1 | | hypothetical protein | insig. | 36 | 37 |
| | Pseudomonas segetis P6 | ACVTMO_RS18995 | | GlxA family transcriptional regulator | insig. | 28 | 54 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_23160 | | AraC family transcriptional regulator | insig. | 36 | 36 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_06790 | | AraC family transcriptional regulator | insig. | 35 | 37 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT1635 | | two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) | insig. | 33 | 31 |
| | Agrobacterium fabrum C58 | Atu4297 | | AraC family transcriptional regulator | strong | 26 | 90 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS22565 | | AraC family transcriptional regulator | insig. | 34 | 37 |
| | Rhodopseudomonas palustris CGA009 | TX73_006775 | | AraC family transcriptional regulator | insig. | 32 | 66 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS17025 | | AraC family transcriptional regulator | strong | 31 | 47 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1041 | | transcriptional regulator, AraC family | insig. | 37 | 35 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1041 | | transcriptional regulator, AraC family | insig. | 37 | 35 |
| | Variovorax sp. SCN45 | GFF3392 | | Transcriptional regulator, AraC family | insig. | 38 | 35 |
| | Xanthobacter sp. DMC5 | GFF4033 | | HTH-type transcriptional activator RhaS | insig. | 35 | 36 |
| | Bosea sp. OAE506 | ABIE41_RS16450 | | AraC family transcriptional regulator | insig. | 37 | 36 |
| | Pseudomonas sp. RS175 | PFR28_03611 | | HTH-type transcriptional regulator CdhR | strong | 27 | 53 |
| | Pseudomonas simiae WCS417 | PS417_16110 | | AraC family transcriptional regulator | no data | 35 | 32 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_3396 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | cofit | 32 | 35 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_03190 | | AraC family transcriptional regulator | insig. | 30 | 85 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_15220 | | AraC family transcriptional regulator | insig. | 27 | 53 |
| | Sinorhizobium meliloti 1021 | SM_b20859 | | AraC family transcriptional regulator | insig. | 34 | 35 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_17040 | | AraC family transcriptional regulator | insig. | 27 | 53 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5332 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 27 | 53 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS16070 | | AraC family transcriptional regulator | insig. | 38 | 37 |
| | Rhizobium sp. OAE497 | ABIE40_RS13855 | | AraC family transcriptional regulator | insig. | 36 | 35 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02634 | | HTH-type transcriptional activator Btr | insig. | 35 | 32 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_26250 | | AraC family transcriptional regulator | insig. | 33 | 36 |
| | Pseudomonas sp. SVBP6 | COO64_RS11775 | | GlxA family transcriptional regulator | insig. | 27 | 53 |
| | Rhizobium sp. OAE497 | ABIE40_RS22540 | | AraC family transcriptional regulator | strong | 37 | 36 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_14825 | | AraC family transcriptional regulator | insig. | 35 | 37 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_01620 | | AraC family transcriptional regulator | insig. | 33 | 39 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_05179 | | HTH-type transcriptional activator RhaR | cofit | 33 | 36 |
| | Paraburkholderia graminis OAS925 | ABIE53_004405 | | AraC-like DNA-binding protein | strong | 28 | 54 |
| | Pseudomonas sp. DMC3 | GFF4442 | | HTH-type transcriptional regulator CdhR | insig. | 27 | 53 |
| | Pseudomonas putida KT2440 | PP_4605 | | Transcriptional regulator, AraC family | insig. | 36 | 35 |
| | Pseudomonas orientalis W4I3 | QF045_RS13870 | | AraC family transcriptional regulator | insig. | 36 | 32 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS20490 | | AraC family transcriptional regulator | insig. | 35 | 37 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS18080 | | helix-turn-helix transcriptional regulator | insig. | 35 | 32 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS18080 | | helix-turn-helix transcriptional regulator | insig. | 35 | 32 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03562 | | AraC family transcriptional regulator | insig. | 31 | 56 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS08240 | | substrate-binding domain-containing protein | strong | 29 | 35 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1629 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 27 | 53 |
| | Pseudomonas sp. S08-1 | OH686_08420 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 26 | 53 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06085 | | transcriptional regulator, AraC family | insig. | 36 | 37 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS17850 | | AraC family transcriptional regulator | insig. | 25 | 95 |
| | Variovorax sp. OAS795 | ABID97_RS28700 | | AraC family transcriptional regulator | no data | 40 | 38 |
| | Rhizobium sp. OAE497 | ABIE40_RS20540 | | AraC family transcriptional regulator | sig. | 33 | 36 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c15870 | | transcriptional regulator, AraC family | strong | 33 | 34 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1525 | | transcriptional regulator, AraC family (RefSeq) | strong | 31 | 36 |
| | Pseudomonas orientalis W4I3 | QF045_RS07130 | | GlxA family transcriptional regulator | cofit | 26 | 53 |
| | Pseudomonas sp. BP01 | JOY50_RS15480 | | helix-turn-helix domain-containing protein | insig. | 35 | 35 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1125 | | Transcriptional regulator, AraC family | insig. | 33 | 36 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00041 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 27 | 61 |
| | Pseudomonas sp. BP01 | JOY50_RS15235 | | GlxA family transcriptional regulator | insig. | 27 | 53 |
| | Pseudomonas putida KT2440 | PP_1313 | | Transcriptional regulator, AraC family | strong | 27 | 53 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_968 | | Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain | insig. | 27 | 53 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS04170 | | GlxA family transcriptional regulator | insig. | 26 | 53 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS04170 | | GlxA family transcriptional regulator | insig. | 26 | 53 |
| | Sinorhizobium meliloti 1021 | SM_b21649 | | AraC family transcriptional regulator | strong | 34 | 38 |
| | Agrobacterium fabrum C58 | Atu0410 | | transcriptional regulator, AraC family | insig. | 33 | 35 |
| | Rhizobium sp. OAE497 | ABIE40_RS22695 | | helix-turn-helix domain-containing protein | strong | 31 | 35 |