Homologs of ECD_03111 from Escherichia coli BL21

targeting factor for csrBC sRNA degradation
SEED: RNase E specificity factor CsrD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Escherichia coli BL21 ECD_03111 targeting factor for csrBC sRNA degradation cofit 100 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00453 RNase E specificity factor CsrD insig. 100 100
o Escherichia coli BW25113 b3252 yhdA conserved inner membrane protein (NCBI) sig. 100 100
o Escherichia coli ECOR27 NOLOHH_09505 csrD RNase E specificity factor CsrD cofit 100 100
o Escherichia coli ECRC62 BNILDI_02015 csrD RNase E specificity factor CsrD insig. 100 100
o Escherichia coli ECRC101 OKFHMN_17720 csrD RNase E specificity factor CsrD insig. 100 100
o Escherichia coli ECRC101 MCAODC_08240 csrD RNase E specificity factor CsrD insig. 100 100
o Escherichia coli ECRC102 NIAGMN_15480 csrD RNase E specificity factor CsrD insig. 100 100
o Escherichia coli ECRC98 JDDGAC_21345 csrD RNase E specificity factor CsrD no data 100 100
o Escherichia coli ECRC99 KEDOAH_10430 csrD RNase E specificity factor CsrD no data 100 100
o Escherichia coli ECOR38 HEPCGN_16585 csrD RNase E specificity factor CsrD cofit 99 100
o Escherichia fergusonii Becca EFB2_00579 RNase E specificity factor CsrD insig. 98 100
o Escherichia coli Nissle 1917 ECOLIN_RS18635 RNase E specificity factor CsrD cofit 98 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2133 RNase E specificity factor CsrD strong 84 100
o Enterobacter sp. TBS_079 MPMX20_04158 RNase E specificity factor CsrD strong 77 100
o Enterobacter asburiae PDN3 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain cofit 77 100
o Klebsiella michiganensis M5al BWI76_RS25505 RNase E specificity factor CsrD strong 75 100
o Serratia liquefaciens MT49 IAI46_22725 RNase E specificity factor CsrD insig. 56 100
o Pectobacterium carotovorum WPP14 HER17_RS20175 RNase E specificity factor CsrD insig. 54 100
o Dickeya dianthicola 67-19 HGI48_RS01345 RNase E specificity factor CsrD cofit 53 100
o Dickeya dianthicola ME23 DZA65_RS01405 RNase E specificity factor CsrD sig. 53 100
o Dickeya dadantii 3937 DDA3937_RS01425 RNase E specificity factor CsrD cofit 53 100
o Erwinia tracheiphila SCR3 LU632_RS21455 csrD RNase E specificity factor CsrD insig. 51 100
o Pantoea sp. MT58 IAI47_02430 RNase E specificity factor CsrD insig. 54 100
o Rahnella sp. WP5 EX31_RS12230 RNase E specificity factor CsrD insig. 50 100
o Vibrio cholerae E7946 ATCC 55056 CSW01_02100 RNase E specificity factor CsrD cofit 34 98
o Shewanella oneidensis MR-1 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) strong 29 97
o Shewanella loihica PV-4 Shew_0384 regulatory protein CsrD (RefSeq) strong 30 98
o Shewanella sp. ANA-3 Shewana3_3668 regulatory protein CsrD (RefSeq) sig. 28 98
o Shewanella amazonensis SB2B Sama_0449 regulatory protein CsrD (RefSeq) sig. 29 97
  Marinobacter adhaerens HP15 HP15_3218 diguanylate cyclase/phosphodiesterase insig. 25 82
  Shewanella sp. ANA-3 Shewana3_2167 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 24 66
  Shewanella oneidensis MR-1 SO2507 GGDEF domain protein (NCBI ptt file) insig. 24 71
  Shewanella amazonensis SB2B Sama_1829 putative diguanylate phosphodiesterase (RefSeq) insig. 23 68
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD insig. 23 97
o Pseudomonas fluorescens FW300-N2E3 AO353_11170 hypothetical protein strong 22 96
  Shewanella loihica PV-4 Shew_2065 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 24 65
  Pseudomonas fluorescens FW300-N2C3 AO356_10580 hypothetical protein cofit 23 80
  Acidovorax sp. GW101-3H11 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD insig. 26 64
  Pseudomonas fluorescens GW456-L13 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD insig. 22 68
  Pseudomonas sp. S08-1 OH686_20650 Membrane bound c-di-GMP receptor LapD insig. 23 68
  Pectobacterium carotovorum WPP14 HER17_RS05880 EAL domain-containing protein cofit 22 98
  Pseudomonas sp. RS175 PFR28_04783 hypothetical protein strong 22 80
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD strong 22 80
  Acidovorax sp. GW101-3H11 Ac3H11_903 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 24 62
  Shewanella sp. ANA-3 Shewana3_0620 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 24 67
  Marinobacter adhaerens HP15 HP15_68 sensory box/FOG: EAL domain/GGDEF domain containing protein insig. 23 67
  Pseudomonas stutzeri RCH2 Psest_1864 diguanylate cyclase (GGDEF) domain insig. 22 69
o Pseudomonas putida KT2440 PP_0165 GGDEF domain protein strong 21 68
  Shewanella oneidensis MR-1 SO0628 GGDEF domain protein (NCBI ptt file) insig. 24 67
  Acidovorax sp. GW101-3H11 Ac3H11_4486 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 23 67
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3529 Membrane bound c-di-GMP receptor LapD insig. 23 65
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15525 GGDEF and EAL domain-containing protein insig. 23 63
  Alteromonas macleodii MIT1002 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr insig. 21 80
  Ralstonia solanacearum PSI07 RPSI07_RS15375 GGDEF-domain containing protein insig. 25 65
  Pseudomonas stutzeri RCH2 Psest_0263 PAS domain S-box/diguanylate cyclase (GGDEF) domain sig. 23 67
  Marinobacter adhaerens HP15 HP15_806 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 23 64
  Herbaspirillum seropedicae SmR1 HSERO_RS13550 diguanylate phosphodiesterase insig. 24 68
  Magnetospirillum magneticum AMB-1 AMB_RS23535 PAS domain S-box protein cofit 23 63
  Magnetospirillum magneticum AMB-1 AMB_RS18310 bifunctional diguanylate cyclase/phosphodiesterase cofit 22 69
  Dechlorosoma suillum PS Dsui_1501 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein insig. 24 67
  Pseudomonas sp. S08-1 OH686_21075 Sensory box/GGDEF family protein insig. 25 64
  Paraburkholderia sabiae LMG 24235 QEN71_RS30355 bifunctional diguanylate cyclase/phosphodiesterase insig. 22 69
  Bosea sp. OAE506 ABIE41_RS19250 EAL domain-containing protein insig. 22 65
  Ralstonia solanacearum GMI1000 RS_RS07755 GGDEF-domain containing protein insig. 24 65
  Pseudomonas fluorescens FW300-N2E3 AO353_18415 hypothetical protein insig. 21 68
  Shewanella amazonensis SB2B Sama_2973 GGDEF domain-containing protein (RefSeq) insig. 24 67
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1842.1 Mlr3171 protein insig. 24 70
  Shewanella amazonensis SB2B Sama_0388 putative diguanylate phosphodiesterase (RefSeq) strong 23 65
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4428 Membrane bound c-di-GMP receptor LapD insig. 23 64
  Marinobacter adhaerens HP15 HP15_3980 diguanylate cyclase/phosphodiesterase insig. 25 63
  Dechlorosoma suillum PS Dsui_2032 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 21 64
  Marinobacter adhaerens HP15 HP15_4050 sensory box/GGDEF family protein cofit 21 64
  Acidovorax sp. GW101-3H11 Ac3H11_2498 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 23 67
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3860 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 23 63
  Pseudomonas putida KT2440 PP_2258 Sensory box protein insig. 23 65
  Ralstonia solanacearum GMI1000 RS_RS02945 PAS domain S-box protein insig. 23 67
  Pseudomonas sp. S08-1 OH686_11905 hypothetical protein insig. 25 63
  Dechlorosoma suillum PS Dsui_0760 diguanylate cyclase (GGDEF) domain-containing protein cofit 22 62
  Acidovorax sp. GW101-3H11 Ac3H11_2715 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 22 67
  Shewanella oneidensis MR-1 SO0437 sensory box protein (NCBI ptt file) strong 21 74
  Shewanella loihica PV-4 Shew_0979 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 19 63
  Bosea sp. OAE506 ABIE41_RS10320 EAL domain-containing protein insig. 24 70
  Alteromonas macleodii MIT1002 MIT1002_01322 Cyclic di-GMP phosphodiesterase Gmr insig. 24 76
  Klebsiella michiganensis M5al BWI76_RS18710 GGDEF-domain containing protein strong 23 67
  Acidovorax sp. GW101-3H11 Ac3H11_2258 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 22 66
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2329 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) strong 22 63
  Pantoea sp. MT58 IAI47_09305 cyclic di-GMP phosphodiesterase strong 21 64
  Magnetospirillum magneticum AMB-1 AMB_RS06165 CBS domain-containing protein insig. 22 64
  Pseudomonas fluorescens GW456-L13 PfGW456L13_490 GGDEF domain protein insig. 24 64
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16935 bifunctional diguanylate cyclase/phosphodiesterase strong 23 73
  Rhodanobacter sp. FW510-T8 OKGIIK_07905 Diguanylate cyclase insig. 23 73
  Dechlorosoma suillum PS Dsui_2160 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein insig. 22 63
  Shewanella oneidensis MR-1 SO0427 sensory box protein (NCBI ptt file) sig. 21 67
  Rhodanobacter denitrificans MT42 LRK55_RS16650 EAL domain-containing protein strong 23 73
  Alteromonas macleodii MIT1002 MIT1002_00433 Cyclic di-GMP phosphodiesterase Gmr insig. 21 78
  Acidovorax sp. GW101-3H11 Ac3H11_2218 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 23 62
  Ralstonia solanacearum PSI07 RPSI07_RS21070 PAS domain S-box protein insig. 23 67
  Shewanella sp. ANA-3 Shewana3_0436 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) strong 22 68
  Shewanella sp. ANA-3 Shewana3_0429 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 21 66