Homologs of CSW01_03685 from Vibrio cholerae E7946 ATCC 55056

ribosomal subunit interface protein
SEED: Ribosome hibernation protein YfiA
KEGG: ribosome-associated inhibitor A

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Vibrio cholerae E7946 ATCC 55056 CSW01_03685 ribosomal subunit interface protein insig. 100 100
o Rahnella sp. WP5 EX31_RS07580 ribosome-associated translation inhibitor RaiA insig. 56 92
o Pantoea sp. MT58 IAI47_04415 ribosome-associated translation inhibitor RaiA insig. 54 91
o Dickeya dadantii 3937 DDA3937_RS16120 ribosome-associated translation inhibitor RaiA insig. 55 92
o Dickeya dianthicola 67-19 HGI48_RS16245 ribosome-associated translation inhibitor RaiA insig. 54 92
o Dickeya dianthicola ME23 DZA65_RS17340 ribosome-associated translation inhibitor RaiA insig. 54 92
o Serratia liquefaciens MT49 IAI46_03975 ribosome-associated translation inhibitor RaiA insig. 54 91
o Pectobacterium carotovorum WPP14 HER17_RS05390 ribosome-associated translation inhibitor RaiA cofit 54 91
o Erwinia amylovora T8 OLJFJH_09715 ribosome-associated translation inhibitor RaiA insig. 54 91
o Klebsiella michiganensis M5al BWI76_RS21460 translation inhibitor protein RaiA insig. 54 91
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4180 Ribosome hibernation protein YfiA insig. 54 91
o Enterobacter asburiae PDN3 EX28DRAFT_2697 ribosomal subunit interface protein cofit 49 100
o Enterobacter sp. TBS_079 MPMX20_03465 Ribosome-associated inhibitor A insig. 49 100
o Escherichia coli BL21 ECD_02486 cold shock protein associated with 30S ribosomal subunit insig. 54 91
o Escherichia fergusonii Becca EFB2_01294 Ribosome-associated inhibitor A insig. 54 91
o Escherichia coli ECOR27 NOLOHH_12910 raiA ribosome-associated translation inhibitor RaiA insig. 54 91
o Escherichia coli ECOR38 HEPCGN_20355 raiA ribosome-associated translation inhibitor RaiA cofit 54 91
o Escherichia coli ECRC100 OKFHMN_21235 raiA ribosome-associated translation inhibitor RaiA cofit 54 91
o Escherichia coli ECRC101 MCAODC_11765 raiA ribosome-associated translation inhibitor RaiA insig. 54 91
o Escherichia coli ECRC102 NIAGMN_19005 raiA ribosome-associated translation inhibitor RaiA insig. 54 91
o Escherichia coli ECRC62 BNILDI_11715 raiA ribosome-associated translation inhibitor RaiA insig. 54 91
o Escherichia coli ECRC98 JDDGAC_24900 raiA ribosome-associated translation inhibitor RaiA cofit 54 91
o Escherichia coli ECRC99 KEDOAH_06985 raiA ribosome-associated translation inhibitor RaiA no data 54 91
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01110 Ribosome-associated inhibitor A insig. 54 91
o Escherichia coli Nissle 1917 ECOLIN_RS14690 ribosome-associated translation inhibitor RaiA no data 54 91
o Escherichia coli BW25113 b2597 yfiA cold shock protein associated with 30S ribosomal subunit (NCBI) strong 54 91
o Erwinia tracheiphila SCR3 LU632_RS16955 raiA ribosome-associated translation inhibitor RaiA insig. 53 91
o Shewanella oneidensis MR-1 SO3422 yfiA-2 ribosomal subunit interface protein (NCBI ptt file) sig. 47 96
o Shewanella amazonensis SB2B Sama_0899 ribosomal subunit interface protein (RefSeq) sig. 45 96
  Shewanella sp. ANA-3 Shewana3_1133 SSU ribosomal protein S30P / sigma 54 modulation protein (RefSeq) strong 48 88
  Shewanella loihica PV-4 Shew_1073 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 48 88
  Pseudomonas sp. RS175 PFR28_00172 Ribosome hibernation promoting factor sig. 43 88
  Pseudomonas syringae pv. syringae B728a Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 46 85
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 46 85
  Pseudomonas sp. SVBP6 COO64_RS04280 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 41 88
  Pseudomonas simiae WCS417 PS417_04340 ribosome hibernation promoting factor HPF strong 42 85
  Pseudomonas sp. DMC3 GFF1827 Ribosome hibernation promoting factor insig. 41 88
  Pseudomonas putida KT2440 PP_0951 Ribosome hibernation promoting factor strong 40 88
  Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 42 89
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 41 88
  Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 41 88
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 41 88
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 40 88
  Pseudomonas aeruginosa PA14 IKLFDK_01765 Sigma 54 modulation protein / S30EA ribosomal protein cofit 42 85
  Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 40 88
  Pseudomonas fluorescens SBW25 PFLU_RS04395 ribosome-associated translation inhibitor RaiA cofit 42 85
  Pseudomonas fluorescens SBW25-INTG PFLU_RS04395 ribosome-associated translation inhibitor RaiA strong 42 85
  Pseudomonas stutzeri RCH2 Psest_3314 ribosomal subunit interface protein sig. 41 85
  Pseudomonas sp. BP01 JOY50_RS11125 hpf ribosome hibernation-promoting factor, HPF/YfiA family insig. 38 88
  Rahnella sp. WP5 EX31_RS12395 ribosome hibernation promoting factor cofit 43 81
  Shewanella amazonensis SB2B Sama_3089 ribosomal subunit interface protein (RefSeq) strong 37 85
  Alteromonas macleodii MIT1002 MIT1002_00826 Ribosome hibernation promoting factor strong 34 90
  Shewanella loihica PV-4 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) strong 38 85
  Marinobacter adhaerens HP15 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA cofit 37 85
  Dechlorosoma suillum PS Dsui_0703 ribosomal subunit interface protein strong 33 92
  Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 38 85
  Enterobacter asburiae PDN3 EX28DRAFT_3257 ribosomal subunit interface protein cofit 37 85
  Kangiella aquimarina DSM 16071 B158DRAFT_2079 ribosomal subunit interface protein insig. 33 90
  Serratia liquefaciens MT49 IAI46_22475 ribosome hibernation promoting factor insig. 39 85
  Lysobacter sp. OAE881 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA cofit 39 85
  Pectobacterium carotovorum WPP14 HER17_RS20065 ribosome hibernation promoting factor cofit 37 85
  Shewanella sp. ANA-3 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) strong 35 85
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2612 Ribosome hibernation protein YhbH strong 30 89
  Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers sig. 36 85
  Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 36 85
  Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor insig. 36 85
  Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 36 85
  Escherichia coli ECRC100 OKFHMN_17935 Ribosome hibernation promoting factor cofit 36 85
  Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor cofit 36 85
  Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 36 85
  Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor strong 36 85
  Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor cofit 36 85
  Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 36 85
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 36 85
  Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 36 85
  Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 36 85
  Vibrio cholerae E7946 ATCC 55056 CSW01_12820 ribosome hibernation promoting factor insig. 35 81
  Acidovorax sp. GW101-3H11 Ac3H11_681 Ribosome hibernation protein YhbH sig. 30 85
  Erwinia tracheiphila SCR3 LU632_RS21285 hpf ribosome hibernation promoting factor insig. 36 85
  Klebsiella michiganensis M5al BWI76_RS25270 ribosome hibernation promoting factor sig. 37 85
  Variovorax sp. OAS795 ABID97_RS04490 ribosome-associated translation inhibitor RaiA insig. 29 85
  Variovorax sp. SCN45 GFF7293 Ribosome hibernation promoting factor Hpf cofit 29 85
  Shewanella oneidensis MR-1 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) sig. 34 85
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 35 90
  Pantoea sp. MT58 IAI47_17190 ribosome hibernation promoting factor insig. 35 81
  Methylophilus sp. DMC18 GFF2268 Ribosome hibernation promoting factor cofit 30 85
  Cupriavidus basilensis FW507-4G11 RR42_RS02080 ribosome hibernation promoting factor sig. 29 93
  Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 35 81
  Dickeya dianthicola 67-19 HGI48_RS01440 ribosome hibernation promoting factor insig. 34 81
  Dickeya dianthicola ME23 DZA65_RS01505 ribosome hibernation promoting factor insig. 34 81
  Erwinia amylovora T8 OLJFJH_07065 ribosome hibernation promoting factor sig. 34 85
  Rhodanobacter denitrificans MT42 LRK55_RS12570 ribosome-associated translation inhibitor RaiA insig. 31 89
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12870 ribosome-associated translation inhibitor RaiA strong 31 89
  Ralstonia solanacearum PSI07 RPSI07_RS22135 ribosomal subunit interface protein strong 26 98
  Fusobacterium nucleatum SB010 HUW76_07850 ribosome-associated translation inhibitor RaiA strong 34 91
  Castellaniella sp019104865 MT123 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA cofit 31 88
  Ralstonia sp. UNC404CL21Col ABZR87_RS07055 ribosome-associated translation inhibitor RaiA strong 26 92
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS15710 ribosome-associated translation inhibitor RaiA insig. 32 85
  Rhodanobacter sp. FW510-T8 OKGIIK_02260 raiA ribosomal subunit interface protein strong 32 85
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11165 ribosomal subunit interface protein strong 26 98