Homologs of CCNA_02837 from Caulobacter crescentus NA1000

RNA polymerase ECF-type sigma factor
SEED: RNA polymerase sigma factor RpoE
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

Or try PaperBLAST, fast.genomics, the ENIGMA genome browser, or the comparative fitness browser

Orth Species Gene Name Description Fitness %Id Cov
  Caulobacter crescentus NA1000 CCNA_02837 RNA polymerase ECF-type sigma factor insig. 100 100
o Caulobacter crescentus NA1000 Δfur CCNA_02837 RNA polymerase ECF-type sigma factor cofit 100 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10790 RNA polymerase sigma factor insig. 70 96
o Burkholderia phytofirmans PsJN BPHYT_RS24975 RNA polymerase sigma24 factor strong 64 93
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 63 94
o Paraburkholderia graminis OAS925 ABIE53_005321 RNA polymerase sigma factor (sigma-70 family) sig. 63 93
o Cupriavidus basilensis FW507-4G11 RR42_RS05810 RNA polymerase sigma factor insig. 64 91
o Agrobacterium fabrum C58 Atu3084 RNA polymerase sigma factor insig. 57 93
o Pseudomonas simiae WCS417 PS417_11995 RNA polymerase sigma factor insig. 59 95
o Pseudomonas fluorescens SBW25 PFLU_RS12745 RNA polymerase sigma factor insig. 60 94
o Pseudomonas fluorescens SBW25-INTG PFLU_RS12745 RNA polymerase sigma factor insig. 60 94
o Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 60 87
o Paraburkholderia sabiae LMG 24235 QEN71_RS16180 RNA polymerase sigma factor insig. 67 93
o Phaeobacter inhibens DSM 17395 PGA1_c08510 RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) insig. 47 96
o Rhodopseudomonas palustris CGA009 TX73_023085 RNA polymerase sigma factor cofit 44 95
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4220 RNA polymerase sigma factor RpoE insig. 39 90
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 39 93
o Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 41 92
  Magnetospirillum magneticum AMB-1 AMB_RS14160 RNA polymerase sigma factor cofit 40 93
  Azospirillum brasilense Sp245 AZOBR_RS31600 RNA polymerase insig. 41 95
  Azospirillum sp. SherDot2 MPMX19_05214 ECF RNA polymerase sigma factor SigE insig. 40 91
o Rhodospirillum rubrum S1H Rru_A2537 Sigma-24 (FecI) (NCBI) insig. 41 92
  Azospirillum sp. SherDot2 MPMX19_05475 hypothetical protein no data 39 87
  Azospirillum sp. SherDot2 MPMX19_04274 RNA polymerase sigma-H factor insig. 41 82
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 37 78
o Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 36 91
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 32 91
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 32 91
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 32 91
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE insig. 35 96
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 31 91
o Lysobacter sp. OAE881 ABIE51_RS13890 RNA polymerase sigma factor RpoE strong 33 91
o Alteromonas macleodii MIT1002 MIT1002_03807 Sigma-W factor insig. 28 94
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 31 93
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 38 77
  Variovorax sp. SCN45 GFF3863 RNA polymerase sigma factor RpoE insig. 34 88
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 38 80
  Rhodanobacter sp. FW510-T8 OKGIIK_05040 RNA polymerase subunit sigma insig. 35 91
  Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 30 93
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 32 92
o Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 32 92
o Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 32 92
o Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 32 92
  Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 32 88
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 35 87
o Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 30 93
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 30 93
  Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 32 97
  Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 30 95
  Variovorax sp. OAS795 ABID97_RS24815 sigma-70 family RNA polymerase sigma factor insig. 34 92
o Bifidobacterium breve UCC2003 BBR_RS15930 RNA polymerase sigma factor insig. 35 91
  Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 31 95
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 31 95
o Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 31 95
  Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 31 95
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 31 95
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 31 95
o Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 31 95
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 31 95
o Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 30 91
o Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 31 95
o Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 29 95
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 34 90
  Variovorax sp. SCN45 GFF2126 hypothetical protein no data 33 92
o Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 31 95
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 34 94
o Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 31 95
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 31 95
o Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 30 92
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 30 92
  Lysobacter sp. OAE881 ABIE51_RS16295 sigma-70 family RNA polymerase sigma factor insig. 31 94
o Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 29 96
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2666 RNA polymerase sigma-70 factor, ECF family insig. 34 87
  Marinobacter adhaerens HP15 HP15_775 RNA polymerase sigma-70 RpoE type insig. 28 95
  Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 28 89
o Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 31 91
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2617 RNA polymerase sigma factor, sigma-70 family insig. 33 94
o Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE cofit 31 91
  Shewanella amazonensis SB2B Sama_2611 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 32 94
  Bosea sp. OAE506 ABIE41_RS11620 sigma-70 family RNA polymerase sigma factor insig. 30 96
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01465 RNA polymerase sigma-70 factor, ECF subfamily insig. 31 94
o Vibrio cholerae E7946 ATCC 55056 CSW01_12485 RNA polymerase sigma factor RpoE no data 29 93
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor insig. 31 88
  Ralstonia solanacearum UW163 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor insig. 31 88
o Shewanella oneidensis MR-1 SO3551 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 30 90
  Rhodopseudomonas palustris CGA009 TX73_024905 sigma-70 family RNA polymerase sigma factor insig. 30 90
  Rahnella sp. WP5 EX31_RS18905 sigma-70 family RNA polymerase sigma factor insig. 28 90
o Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 27 90
o Shewanella loihica PV-4 Shew_1231 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 29 92
o Bacteroides thetaiotaomicron VPI-5482 BT4571 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 26 91
  Castellaniella sp019104865 MT123 ABCV34_RS11175 sigma-70 family RNA polymerase sigma factor insig. 34 76
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3339 RNA polymerase sigma factor RpoE cofit 30 84
  Shewanella oneidensis MR-1 SO3840 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 26 90
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0443 RNA polymerase sigma factor, sigma-70 family insig. 34 91
  Ralstonia sp. UNC404CL21Col ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor insig. 30 90
o Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 29 95
  Shewanella sp. ANA-3 Shewana3_3152 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) cofit 28 90
  Ralstonia solanacearum GMI1000 RS_RS11855 DNA-directed RNA polymerase sigma-70 factor insig. 31 90
  Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 27 95
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 27 95