| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Magnetospirillum magneticum AMB-1 | AMB_RS00355 | | radical SAM protein | strong | 100 | 100 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3004 | | radical SAM domain protein (TIGR) | cofit | 22 | 81 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1282 | moaA | molybdenum cofactor biosynthesis protein A | cofit | 24 | 53 |
| | Xanthobacter sp. DMC5 | GFF1197 | | PqqA peptide cyclase | insig. | 33 | 45 |
| | Lysobacter sp. OAE881 | ABIE51_RS14055 | | GTP 3',8-cyclase MoaA | strong | 25 | 72 |
| | Pseudomonas sp. SVBP6 | COO64_RS14070 | nirJ | heme d1 biosynthesis radical SAM protein NirJ | insig. | 29 | 49 |
| | Variovorax sp. SCN45 | GFF1123 | | GTP 3',8-cyclase (EC 4.1.99.22) | insig. | 31 | 49 |
| | Ralstonia solanacearum GMI1000 | RS_RS05145 | | GTP 3',8-cyclase MoaA | sig. | 28 | 65 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06444 | | cyclic pyranopterin monophosphate synthase subunit MoaA | insig. | 29 | 49 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4170 | | molybdenum cofactor biosynthesis protein A, bacterial | insig. | 29 | 48 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS00235 | | radical SAM protein | no data | 26 | 49 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS08755 | | molybdenum cofactor biosynthesis protein MoeA | no data | 29 | 66 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS14165 | | molybdenum cofactor biosynthesis protein MoeA | no data | 29 | 66 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3173 | | Radical SAM domain protein (RefSeq) | insig. | 29 | 53 |
| | Methanococcus maripaludis S2 | MMP_RS03015 | | GTP 3' 8-cyclase MoaA | strong | 31 | 33 |
| | Methanococcus maripaludis JJ | MMJJ_RS02055 | | GTP 3',8-cyclase MoaA | strong | 31 | 33 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.4022.1 | | Molybdenum cofactor biosynthesis protein MoaA | insig. | 32 | 50 |
| | Rahnella sp. WP5 | EX31_RS00655 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 27 | 53 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5772 | | Heme d1 biosynthesis protein NirJ | strong | 27 | 57 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS19095 | | GTP 3',8-cyclase MoaA | sig. | 27 | 65 |
| | Erwinia amylovora T8 | OLJFJH_02120 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 22 | 86 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS16130 | pqqE;go_process=peptide | pyrroloquinoline quinone biosynthesis protein PqqE | sig. | 28 | 54 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_09720 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 28 | 54 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS38450 | pqqE;go_process=peptide | pyrroloquinoline quinone biosynthesis protein PqqE | sig. | 28 | 54 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS14365 | | GTP 3',8-cyclase MoaA | strong | 28 | 65 |
| | Ralstonia solanacearum UW163 | UW163_RS11830 | | GTP 3',8-cyclase MoaA | insig. | 28 | 65 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4674 | | Radical SAM | insig. | 26 | 57 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4674 | | Radical SAM | insig. | 26 | 57 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS05940 | | pyrroloquinoline quinone biosynthesis protein PqqE | cofit | 22 | 86 |
| | Caulobacter crescentus NA1000 | CCNA_00018 | | molybdenum cofactor biosynthesis protein A | strong | 28 | 49 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00018 | | molybdenum cofactor biosynthesis protein A | cofit | 28 | 49 |
| | Pseudomonas putida KT2440 | PP_0376 | | Coenzyme PQQ synthesis protein E | strong | 25 | 57 |
| | Paraburkholderia graminis OAS925 | ABIE53_003060 | | cyclic pyranopterin phosphate synthase | strong | 31 | 49 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_21930 | | heme d1 biosynthesis radical SAM protein NirJ | insig. | 27 | 57 |
| | Pseudomonas sp. RS175 | PFR28_02238 | | Putative mycofactocin radical SAM maturase MftC | insig. | 26 | 53 |
| | Xanthobacter sp. DMC5 | GFF4349 | | GTP 3',8-cyclase | insig. | 25 | 51 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04338 | | cyclic pyranopterin monophosphate synthase subunit MoaA | strong | 31 | 49 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS05375 | moaA;go_function=4 | GTP 3' 8-cyclase MoaA | sig. | 29 | 35 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_07170 | | GTP 3' 8-cyclase MoaA | strong | 29 | 35 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS47410 | moaA;go_function=4 | GTP 3' 8-cyclase MoaA | sig. | 29 | 35 |
| | Xanthobacter sp. DMC5 | GFF4732 | | GTP 3',8-cyclase | insig. | 28 | 43 |
| | Acinetobacter radioresistens SK82 | MPMX26_01570 | | GTP 3',8-cyclase | no data | 23 | 45 |
| | Pantoea sp. MT58 | IAI47_10205 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 22 | 86 |
| | Shewanella oneidensis MR-1 | SO4724 | | molybdenum cofactor biosynthesis protein A, putative (NCBI ptt file) | insig. | 22 | 49 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2903 | | Radical SAM domain protein (RefSeq) | no data | 25 | 49 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF4264 | | Molybdenum cofactor biosynthesis protein MoaA | cofit | 29 | 49 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS10080 | | GTP 3',8-cyclase MoaA | strong | 28 | 49 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22410 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 26 | 52 |
| | Pseudomonas sp. DMC3 | GFF1642 | | GTP 3',8-cyclase | insig. | 22 | 62 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS01575 | | radical SAM protein | insig. | 20 | 90 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS02325 | | radical SAM protein | insig. | 20 | 90 |
| | Azospirillum brasilense Sp245 | AZOBR_RS10710 | | radical SAM domain-containing protein | insig. | 29 | 41 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS04490 | | GTP 3',8-cyclase MoaA | insig. | 30 | 49 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS14490 | | molybdenum cofactor biosynthesis protein MoeA | strong | 30 | 49 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_487 | | Molybdenum cofactor biosynthesis protein MoaA | strong | 29 | 50 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3513 | | Coenzyme PQQ synthesis protein E | sig. | 27 | 50 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0857 | nirJ-1 | radical SAM domain protein (TIGR) | no data | 24 | 49 |
| | Pseudomonas stutzeri RCH2 | Psest_3481 | | molybdenum cofactor biosynthesis protein A, bacterial | strong | 24 | 47 |
| | Methylophilus sp. DMC18 | GFF2436 | | GTP 3',8-cyclase | cofit | 27 | 41 |
| | Pseudomonas stutzeri RCH2 | Psest_2270 | | coenzyme PQQ biosynthesis protein E | strong | 27 | 53 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1485.1 | | Coenzyme PQQ synthesis protein E | insig. | 34 | 27 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_17110 | | radical SAM protein | strong | 25 | 53 |
| | Pseudomonas sp. DMC3 | GFF62 | | PqqA peptide cyclase | cofit | 25 | 53 |
| | Mycobacterium tuberculosis H37Rv | Rv3109 | | Probable molybdenum cofactor biosynthesis protein A MoaA1 | insig. | 25 | 49 |
| | Marinobacter adhaerens HP15 | HP15_2952 | | molybdenum cofactor biosynthesis protein A | insig. | 21 | 50 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_07450 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 26 | 49 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1165 | | Coenzyme PQQ synthesis protein E | insig. | 26 | 49 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2209 | | molybdenum cofactor biosynthesis protein A, bacterial | cofit | 26 | 46 |
| | Pseudomonas sp. BP01 | JOY50_RS17995 | pqqE | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 24 | 60 |
| | Sinorhizobium meliloti 1021 | SMc00144 | | molybdenum cofactor biosynthesis protein A | sig. | 28 | 42 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS27585 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 24 | 53 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS27585 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 24 | 53 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2499 | | Coenzyme PQQ synthesis protein E | cofit | 26 | 49 |
| | Enterobacter sp. TBS_079 | MPMX20_01410 | | GTP 3',8-cyclase | strong | 25 | 46 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1947 | | Coenzyme PQQ synthesis protein E | insig. | 25 | 53 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4772 | | Coenzyme PQQ synthesis protein E | strong | 25 | 53 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_05309 | | PqqA peptide cyclase | cofit | 24 | 53 |
| | Ralstonia solanacearum GMI1000 | RS_RS08730 | | GDL motif peptide-associated radical SAM/SPASM maturase | insig. | 21 | 81 |
| | Rhodospirillum rubrum S1H | Rru_A0763 | | Radical SAM (NCBI) | insig. | 28 | 50 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_14200 | | pyrroloquinoline quinone biosynthesis protein PqqE | sig. | 25 | 53 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_30425 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 25 | 53 |
| | Pseudomonas putida KT2440 | PP_4597 | | Cyclic pyranopterin monophosphate synthase | strong | 24 | 46 |
| | Shewanella loihica PV-4 | Shew_3688 | | molybdenum cofactor biosynthesis protein A (RefSeq) | insig. | 21 | 49 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS36770 | nirJ;go_function=4 | heme d1 biosynthesis radical SAM protein NirJ | insig. | 26 | 54 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS22565 | nirJ;go_function=4 | heme d1 biosynthesis radical SAM protein NirJ | insig. | 26 | 54 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_22880 | | heme d1 biosynthesis radical SAM protein NirJ | insig. | 26 | 54 |
| | Pseudomonas sp. RS175 | PFR28_04090 | | PqqA peptide cyclase | cofit | 25 | 53 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS11590 | | radical SAM protein | cofit | 25 | 40 |
| | Pseudomonas simiae WCS417 | PS417_25940 | | pyrroloquinoline quinone biosynthesis protein PqqE | strong | 24 | 53 |
| | Shewanella sp. ANA-3 | Shewana3_4082 | | molybdenum cofactor biosynthesis protein A (RefSeq) | insig. | 22 | 49 |
| | Shewanella loihica PV-4 | Shew_0087 | moaA | molybdenum cofactor biosynthesis protein A (RefSeq) | strong | 26 | 41 |
| | Dickeya dianthicola 67-19 | HGI48_RS17455 | | radical SAM protein | insig. | 26 | 41 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4505 | | Coenzyme PQQ synthesis protein E | insig. | 25 | 52 |
| | Pseudomonas orientalis W4I3 | QF045_RS00340 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 24 | 53 |
| | Pseudomonas sp. BP01 | JOY50_RS01585 | moaA | GTP 3',8-cyclase MoaA | insig. | 24 | 46 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS16210 | | GDL motif peptide-associated radical SAM/SPASM maturase | insig. | 21 | 81 |
| | Pseudomonas stutzeri RCH2 | Psest_2511 | | molybdenum cofactor biosynthesis protein A, bacterial | strong | 30 | 33 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_05210 | | GTP 3',8-cyclase MoaA | insig. | 28 | 40 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_25035 | | heme d1 biosynthesis radical SAM protein NirJ | insig. | 25 | 57 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2327 | | GTP cyclohydrolase subunit MoaA | insig. | 23 | 42 |