Homologs of SO2507 from Shewanella oneidensis MR-1

GGDEF domain protein (NCBI ptt file)
SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO2507 GGDEF domain protein (NCBI ptt file) insig. 100 100
o Shewanella sp. ANA-3 Shewana3_2167 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 88 100
o Shewanella amazonensis SB2B Sama_1829 putative diguanylate phosphodiesterase (RefSeq) insig. 55 99
o Shewanella loihica PV-4 Shew_2065 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 52 100
  Alteromonas macleodii MIT1002 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr insig. 24 98
  Marinobacter adhaerens HP15 HP15_3218 diguanylate cyclase/phosphodiesterase insig. 29 65
  Pseudomonas fluorescens FW300-N2C3 AO356_10580 hypothetical protein cofit 25 78
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD strong 25 78
  Pseudomonas sp. RS175 PFR28_04783 hypothetical protein strong 24 78
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD insig. 24 77
  Pseudomonas sp. S08-1 OH686_11905 hypothetical protein insig. 27 65
  Pseudomonas fluorescens GW456-L13 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD insig. 26 69
  Pseudomonas fluorescens FW300-N2E3 AO353_11170 hypothetical protein strong 24 77
  Pseudomonas sp. DMC3 GFF4286 hypothetical protein cofit 24 77
  Pseudomonas sp. SVBP6 COO64_RS26435 lapD cyclic di-GMP receptor LapD cofit 25 77
  Pseudomonas putida KT2440 PP_0165 GGDEF domain protein strong 25 69
  Pseudomonas sp. BP01 JOY50_RS28180 lapD cyclic di-GMP receptor LapD no data 24 69
  Alteromonas macleodii MIT1002 MIT1002_01559 Cyclic di-GMP phosphodiesterase YfgF insig. 25 77
  Pseudomonas sp. S08-1 OH686_21075 Sensory box/GGDEF family protein insig. 26 66
  Acidovorax sp. GW101-3H11 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD insig. 25 76
  Shewanella amazonensis SB2B Sama_0449 regulatory protein CsrD (RefSeq) sig. 27 71
  Shewanella loihica PV-4 Shew_3125 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 25 65
  Pseudomonas simiae WCS417 PS417_19145 membrane protein strong 25 71
  Pseudomonas aeruginosa PA14 IKLFDK_03805 PAS domain S-box protein insig. 25 70
  Pseudomonas fluorescens SBW25 PFLU_RS21140 EAL domain-containing protein cofit 25 71
  Pseudomonas fluorescens SBW25-INTG PFLU_RS21140 EAL domain-containing protein strong 25 71
  Klebsiella michiganensis M5al BWI76_RS25505 RNase E specificity factor CsrD strong 24 70
  Pseudomonas sp. BP01 JOY50_RS16180 EAL domain-containing protein insig. 25 67
  Pseudomonas putida KT2440 PP_1761 diguanylate cyclase with phosphodiesterase domain strong 24 67
  Escherichia fergusonii Becca EFB2_00579 RNase E specificity factor CsrD insig. 24 67
  Escherichia coli ECOR38 HEPCGN_16585 csrD RNase E specificity factor CsrD cofit 24 70
  Escherichia coli Nissle 1917 ECOLIN_RS18635 RNase E specificity factor CsrD cofit 24 67
  Escherichia coli BL21 ECD_03111 targeting factor for csrBC sRNA degradation cofit 24 70
  Escherichia coli ECOR27 NOLOHH_09505 csrD RNase E specificity factor CsrD cofit 24 70
  Escherichia coli ECRC100 OKFHMN_17720 csrD RNase E specificity factor CsrD cofit 24 70
  Escherichia coli ECRC101 MCAODC_08240 csrD RNase E specificity factor CsrD cofit 24 70
  Escherichia coli ECRC102 NIAGMN_15480 csrD RNase E specificity factor CsrD insig. 24 70
  Escherichia coli ECRC62 BNILDI_02015 csrD RNase E specificity factor CsrD cofit 24 70
  Escherichia coli ECRC98 JDDGAC_21345 csrD RNase E specificity factor CsrD cofit 24 70
  Escherichia coli ECRC99 KEDOAH_10430 csrD RNase E specificity factor CsrD no data 24 70
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00453 RNase E specificity factor CsrD insig. 24 70
  Escherichia coli BW25113 b3252 yhdA conserved inner membrane protein (NCBI) sig. 24 70
  Pseudomonas sp. DMC3 GFF4687 hypothetical protein cofit 24 67
  Enterobacter sp. TBS_079 MPMX20_04158 RNase E specificity factor CsrD strong 23 76
  Serratia liquefaciens MT49 IAI46_22725 RNase E specificity factor CsrD insig. 23 86
  Pseudomonas sp. SVBP6 COO64_RS06790 EAL domain-containing protein cofit 25 67
  Pectobacterium carotovorum WPP14 HER17_RS05880 EAL domain-containing protein cofit 24 67
  Dechlorosoma suillum PS Dsui_0760 diguanylate cyclase (GGDEF) domain-containing protein cofit 25 66
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2166 Sensory box/GGDEF family protein insig. 24 67
  Pseudomonas fluorescens FW300-N2C3 AO356_03515 hypothetical protein cofit 25 70
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2530 Sensory box/GGDEF family protein strong 25 70
  Enterobacter asburiae PDN3 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain cofit 23 70
  Pseudomonas syringae pv. syringae B728a Psyr_3655 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) cofit 24 67
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3655 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 24 67
  Shewanella amazonensis SB2B Sama_2973 GGDEF domain-containing protein (RefSeq) insig. 24 65
  Erwinia amylovora T8 OLJFJH_06905 RNase E specificity factor CsrD strong 24 65
  Marinobacter adhaerens HP15 HP15_862 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain insig. 25 65
  Erwinia tracheiphila SCR3 LU632_RS21455 csrD RNase E specificity factor CsrD insig. 24 68
  Vibrio cholerae E7946 ATCC 55056 CSW01_00390 GGDEF domain-containing protein insig. 25 67
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_361 Sensory box/GGDEF family protein insig. 24 67
  Pseudomonas sp. RS175 PFR28_00896 hypothetical protein insig. 24 70
  Cupriavidus basilensis FW507-4G11 RR42_RS03995 diguanylate cyclase insig. 25 66
  Shewanella loihica PV-4 Shew_0384 regulatory protein CsrD (RefSeq) strong 25 70
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2133 RNase E specificity factor CsrD strong 25 71
  Rhodanobacter denitrificans MT42 LRK55_RS09660 EAL domain-containing protein cofit 25 64
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS10020 EAL domain-containing protein insig. 25 64
  Kangiella aquimarina DSM 16071 B158DRAFT_2394 diguanylate cyclase (GGDEF) domain strong 25 69
  Pantoea sp. MT58 IAI47_02430 RNase E specificity factor CsrD insig. 24 71
  Acidovorax sp. GW101-3H11 Ac3H11_903 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 24 65
  Acidovorax sp. GW101-3H11 Ac3H11_4120 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 25 66
  Shewanella oneidensis MR-1 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) strong 23 70
  Pseudomonas fluorescens FW300-N2E3 AO353_02120 hypothetical protein strong 24 67
  Shewanella sp. ANA-3 Shewana3_3668 regulatory protein CsrD (RefSeq) sig. 23 70
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS02790 EAL domain-containing protein insig. 25 65
  Shewanella sp. ANA-3 Shewana3_0376 diguanylate cyclase/phosphodiesterase (RefSeq) sig. 24 78
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1842.1 Mlr3171 protein insig. 24 66
  Pseudomonas fluorescens FW300-N2E3 AO353_18415 hypothetical protein insig. 23 69
  Rhodospirillum rubrum S1H Rru_A2763 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) insig. 25 65
  Rhodanobacter sp. FW510-T8 OKGIIK_16275 Diguanylate cyclase insig. 25 65
  Herbaspirillum seropedicae SmR1 HSERO_RS13550 diguanylate phosphodiesterase insig. 24 79
  Paraburkholderia sabiae LMG 24235 QEN71_RS35965 EAL domain-containing protein strong 25 69
  Pseudomonas sp. S08-1 OH686_20650 Membrane bound c-di-GMP receptor LapD insig. 22 69
  Shewanella oneidensis MR-1 SO4323 GGDEF domain protein (NCBI ptt file) cofit 24 78
  Shewanella oneidensis MR-1 SO0628 GGDEF domain protein (NCBI ptt file) insig. 24 65
  Vibrio cholerae E7946 ATCC 55056 CSW01_02100 RNase E specificity factor CsrD cofit 23 64
  Rahnella sp. WP5 EX31_RS12230 RNase E specificity factor CsrD insig. 23 68
  Alteromonas macleodii MIT1002 MIT1002_00145 Cyclic di-GMP phosphodiesterase Gmr cofit 24 65
  Paraburkholderia sabiae LMG 24235 QEN71_RS17100 EAL domain-containing protein insig. 26 65
  Bosea sp. OAE506 ABIE41_RS19250 EAL domain-containing protein insig. 24 66
  Pseudomonas aeruginosa PA14 IKLFDK_05475 diguanylate cyclase insig. 25 66
  Shewanella sp. ANA-3 Shewana3_0620 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 23 65
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3529 Membrane bound c-di-GMP receptor LapD insig. 22 72
  Shewanella loihica PV-4 Shew_3416 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 24 66
  Pectobacterium carotovorum WPP14 HER17_RS20175 RNase E specificity factor CsrD insig. 23 65
  Shewanella sp. ANA-3 Shewana3_0436 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) strong 26 65
  Shewanella loihica PV-4 Shew_0307 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 22 75
  Shewanella amazonensis SB2B Sama_0388 putative diguanylate phosphodiesterase (RefSeq) strong 24 65
  Shewanella oneidensis MR-1 SO0437 sensory box protein (NCBI ptt file) strong 26 65
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS03505 EAL domain-containing protein insig. 24 76
  Magnetospirillum magneticum AMB-1 AMB_RS03740 signal transduction protein insig. 24 65