Conservation of cofitness between TX73_009115 and TX73_013480 in Rhodopseudomonas palustris CGA009

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_009115 phosphoenolpyruvate carboxylase 1.0 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.50 12
Azospirillum sp. SherDot2 0.61 MPMX19_06050 Phosphoenolpyruvate carboxylase 0.52 MPMX19_01696 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 112
Dechlorosoma suillum PS 0.53 Dsui_1603 phosphoenolpyruvate carboxylase 0.37 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS04250 phosphoenolpyruvate carboxylase 0.41 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Ralstonia solanacearum UW163 0.48 UW163_RS09420 phosphoenolpyruvate carboxylase 0.41 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS16140 phosphoenolpyruvate carboxylase 0.41 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Ralstonia solanacearum GMI1000 0.48 RS_RS11840 phosphoenolpyruvate carboxylase 0.41 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS15905 phosphoenolpyruvate carboxylase 0.38 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase low > 128
Ralstonia solanacearum PSI07 0.47 RPSI07_RS13100 phosphoenolpyruvate carboxylase 0.42 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 81
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS14670 phosphoenolpyruvate carboxylase 0.40 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase low > 78
Paraburkholderia graminis OAS925 0.46 ABIE53_001314 phosphoenolpyruvate carboxylase 0.37 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 113
Acidovorax sp. GW101-3H11 0.46 Ac3H11_3553 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.36 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 79
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_00197 Phosphoenolpyruvate carboxylase, type 1 0.36 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF115 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.35 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 90
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS05225 phosphoenolpyruvate carboxylase 0.36 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 109
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS24955 phosphoenolpyruvate carboxylase 0.35 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 153
Variovorax sp. SCN45 0.45 GFF3838 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.34 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) low > 127
Variovorax sp. OAS795 0.44 ABID97_RS08220 phosphoenolpyruvate carboxylase 0.35 ABID97_RS01590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 91
Castellaniella sp019104865 MT123 0.41 ABCV34_RS14805 phosphoenolpyruvate carboxylase 0.36 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 48
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS12510 phosphoenolpyruvate carboxylase 0.61 A4249_RS08775 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 48
Sphingomonas koreensis DSMZ 15582 0.38 Ga0059261_2719 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) 0.53 Ga0059261_1011 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 68
Caulobacter crescentus NA1000 0.31 CCNA_01560 phosphoenolpyruvate carboxylase 0.59 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 66
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_01560 phosphoenolpyruvate carboxylase 0.59 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Shewanella amazonensis SB2B 0.25 Sama_0254 phosphoenolpyruvate carboxylase (RefSeq) 0.38 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 62
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.4314.1 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.38 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 74
Synechococcus elongatus PCC 7942 0.25 Synpcc7942_2252 ppc phosphoenolpyruvate carboxylase 0.39 Synpcc7942_2348 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Pantoea sp. MT58 0.25 IAI47_00895 phosphoenolpyruvate carboxylase 0.36 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Lysobacter sp. OAE881 0.25 ABIE51_RS18965 phosphoenolpyruvate carboxylase 0.38 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Pseudomonas putida KT2440 0.24 PP_1505 Phosphoenolpyruvate carboxylase 0.35 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.17 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF2342 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.34 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 78
Escherichia fergusonii Becca 0.24 EFB2_04658 Phosphoenolpyruvate carboxylase 0.34 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 86
Escherichia coli ECOR38 0.24 HEPCGN_12240 ppc phosphoenolpyruvate carboxylase 0.34 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 87
Escherichia coli BW25113 0.24 b3956 ppc phosphoenolpyruvate carboxylase (NCBI) 0.34 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) low > 76
Escherichia coli BL21 0.24 ECD_03841 phosphoenolpyruvate carboxylase 0.34 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 61
Escherichia coli ECOR27 0.24 NOLOHH_05740 ppc phosphoenolpyruvate carboxylase 0.34 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Acinetobacter radioresistens SK82 0.24 MPMX26_03013 Phosphoenolpyruvate carboxylase 0.34 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 36
Shewanella sp. ANA-3 0.24 Shewana3_3906 phosphoenolpyruvate carboxylase (RefSeq) 0.37 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_04094 Phosphoenolpyruvate carboxylase 0.34 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Escherichia coli Nissle 1917 0.24 ECOLIN_RS22835 phosphoenolpyruvate carboxylase 0.34 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC62 0.24 BNILDI_05785 ppc phosphoenolpyruvate carboxylase 0.34 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Escherichia coli ECRC100 0.24 OKFHMN_13595 ppc phosphoenolpyruvate carboxylase 0.34 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Escherichia coli ECRC98 0.24 JDDGAC_17220 ppc phosphoenolpyruvate carboxylase 0.34 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Shewanella oneidensis MR-1 0.24 SO0274 ppc phosphoenolpyruvate carboxylase (NCBI ptt file) 0.37 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) low > 76
Escherichia coli ECRC101 0.24 MCAODC_04095 ppc phosphoenolpyruvate carboxylase 0.34 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 87
Escherichia coli ECRC102 0.24 NIAGMN_11345 ppc phosphoenolpyruvate carboxylase 0.34 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Pseudomonas sp. RS175 0.24 PFR28_00368 Phosphoenolpyruvate carboxylase 0.36 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 88
Enterobacter asburiae PDN3 0.24 EX28DRAFT_4418 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) 0.35 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 76
Escherichia coli ECRC99 0.24 KEDOAH_14565 ppc phosphoenolpyruvate carboxylase 0.34 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Enterobacter sp. TBS_079 0.24 MPMX20_04524 Phosphoenolpyruvate carboxylase 0.35 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 85
Pectobacterium carotovorum WPP14 0.24 HER17_RS20655 phosphoenolpyruvate carboxylase 0.33 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Rhodanobacter sp. FW510-T8 0.24 OKGIIK_11820 ppc phosphoenolpyruvate carboxylase 0.36 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 52
Rahnella sp. WP5 0.24 EX31_RS14200 phosphoenolpyruvate carboxylase 0.35 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 89
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS11555 phosphoenolpyruvate carboxylase 0.35 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Serratia liquefaciens MT49 0.24 IAI46_24525 phosphoenolpyruvate carboxylase 0.35 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_06185 phosphoenolpyruvate carboxylase 0.35 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 104
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3051 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.36 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_3103 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.35 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 103
Klebsiella michiganensis M5al 0.24 BWI76_RS00835 phosphoenolpyruvate carboxylase 0.34 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 92
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS06130 phosphoenolpyruvate carboxylase 0.35 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens SBW25 0.24 PFLU_RS06130 phosphoenolpyruvate carboxylase 0.35 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas stutzeri RCH2 0.24 Psest_1557 Phosphoenolpyruvate carboxylase 0.34 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_4740 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.37 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Erwinia tracheiphila SCR3 0.23 LU632_RS19625 ppc phosphoenolpyruvate carboxylase 0.35 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_16310 phosphoenolpyruvate carboxylase 0.37 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 101
Rhodanobacter denitrificans MT42 0.23 LRK55_RS11810 phosphoenolpyruvate carboxylase 0.38 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 63
Vibrio cholerae E7946 ATCC 55056 0.23 CSW01_13390 phosphoenolpyruvate carboxylase 0.36 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Rhodanobacter denitrificans FW104-10B01 0.23 LRK54_RS12075 phosphoenolpyruvate carboxylase 0.36 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 59
Pseudomonas simiae WCS417 0.23 PS417_06060 phosphoenolpyruvate carboxylase 0.35 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase low > 88
Shewanella loihica PV-4 0.23 Shew_0200 phosphoenolpyruvate carboxylase (RefSeq) 0.38 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) — —
Dickeya dianthicola 67-19 0.23 HGI48_RS00850 phosphoenolpyruvate carboxylase 0.35 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 71
Pseudomonas sp. S08-1 0.23 OH686_06795 Phosphoenolpyruvate carboxylase 0.36 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 80
Dickeya dadantii 3937 0.23 DDA3937_RS20360 phosphoenolpyruvate carboxylase 0.36 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Marinobacter adhaerens HP15 0.23 HP15_795 phosphoenolpyruvate carboxylase 0.37 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_1318 Phosphoenolpyruvate carboxylase 0.35 Psyr_1227 Queuosine biosynthesis protein low > 86
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_1318 Phosphoenolpyruvate carboxylase 0.35 Psyr_1227 Queuosine biosynthesis protein low > 86
Dickeya dianthicola ME23 0.23 DZA65_RS00895 phosphoenolpyruvate carboxylase 0.35 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Alteromonas macleodii MIT1002 0.22 MIT1002_03491 Phosphoenolpyruvate carboxylase 0.33 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 70
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_05530 phosphoenolpyruvate carboxylase 0.35 CA264_18125 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Pedobacter sp. GW460-11-11-14-LB5 0.11 CA265_RS21350 phosphoenolpyruvate carboxylase 0.33 CA265_RS07505 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.11 Echvi_3727 Phosphoenolpyruvate carboxylase 0.32 Echvi_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.10 ABZR88_RS09465 phosphoenolpyruvate carboxylase 0.34 ABZR88_RS03940 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —

Not shown: 1 genomes with orthologs for TX73_009115 only; 19 genomes with orthologs for TX73_013480 only