Conservation of cofitness between RR42_RS37475 and RR42_RS14155 in Cupriavidus basilensis FW507-4G11

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS37475 peptide chain release factor 3 1.0 RR42_RS14155 pseudouridine synthase 0.45 6
Ralstonia solanacearum PSI07 0.87 RPSI07_RS07810 peptide chain release factor 3 0.68 RPSI07_RS19085 RluA family pseudouridine synthase low > 81
Ralstonia solanacearum IBSBF1503 0.87 RALBFv3_RS23345 peptide chain release factor 3 0.69 RALBFv3_RS14375 RluA family pseudouridine synthase low > 76
Ralstonia solanacearum UW163 0.87 UW163_RS16595 peptide chain release factor 3 0.69 UW163_RS11840 RluA family pseudouridine synthase — —
Ralstonia solanacearum GMI1000 0.87 RS_RS25080 peptide chain release factor 3 0.68 RS_RS05155 RluA family pseudouridine synthase low > 80
Ralstonia sp. UNC404CL21Col 0.87 ABZR87_RS23485 peptide chain release factor 3 0.68 ABZR87_RS10090 RluA family pseudouridine synthase low > 80
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS14640 peptide chain release factor 3 0.62 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C low > 78
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS19000 peptide chain release factor 3 0.36 ABZR86_RS02725 RluA family pseudouridine synthase — —
Lysobacter sp. OAE881 0.66 ABIE51_RS16210 peptide chain release factor 3 0.35 ABIE51_RS11800 RluA family pseudouridine synthase — —
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS05380 peptide chain release factor 3 0.39 LRK54_RS17895 RluA family pseudouridine synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.1590.1 Peptide chain release factor 3 0.35 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_2239 peptide chain release factor 3 0.42 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) low > 40
Shewanella loihica PV-4 0.64 Shew_2820 prfC peptide chain release factor 3 (RefSeq) 0.44 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.52 21
Rhodanobacter denitrificans MT42 0.64 LRK55_RS05155 peptide chain release factor 3 0.39 LRK55_RS17750 RluA family pseudouridine synthase — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_01430 prfC peptide chain release factor 3 0.39 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase — —
Marinobacter adhaerens HP15 0.64 HP15_541 peptide chain release factor 3 0.42 HP15_2221 pseudouridine synthase, RluA family low > 73
Dechlorosoma suillum PS 0.63 Dsui_2418 peptide chain release factor 3 0.52 Dsui_2437 pseudouridine synthase, RluA family low > 51
Enterobacter sp. TBS_079 0.63 MPMX20_00673 Peptide chain release factor RF3 0.43 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.43 68
Enterobacter asburiae PDN3 0.63 EX28DRAFT_3583 peptide chain release factor 3 0.43 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Pseudomonas stutzeri RCH2 0.62 Psest_3351 peptide chain release factor 3 0.41 Psest_1680 pseudouridine synthase, RluA family — —
Klebsiella michiganensis M5al 0.62 BWI76_RS04100 peptide chain release factor 3 0.44 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase low > 92
Pantoea sp. MT58 0.62 IAI47_03375 peptide chain release factor 3 0.44 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.44 33
Shewanella sp. ANA-3 0.62 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) 0.42 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) low > 73
Escherichia coli Nissle 1917 0.62 ECOLIN_RS25110 peptide chain release factor 3 0.44 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 55
Dickeya dadantii 3937 0.62 DDA3937_RS02445 peptide chain release factor 3 0.40 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Pseudomonas sp. S08-1 0.62 OH686_08765 peptide chain release factor 3 0.39 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase — —
Escherichia coli ECRC62 0.62 BNILDI_08000 prfC peptide chain release factor 3 0.44 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli BW25113 0.62 b4375 prfC peptide chain release factor 3 (NCBI) 0.44 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Pseudomonas putida KT2440 0.62 PP_0872 Peptide chain release factor 3 0.41 PP_1906 ribosomal large subunit pseudouridine synthase C 0.35 20
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_5060 Peptide chain release factor 3 0.40 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.33 61
Escherichia coli ECRC99 0.62 KEDOAH_16865 prfC peptide chain release factor 3 0.44 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC98 0.62 JDDGAC_14875 prfC peptide chain release factor 3 0.44 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Escherichia coli ECRC102 0.62 NIAGMN_09130 prfC peptide chain release factor 3 0.44 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli BL21 0.62 ECD_04250 peptide chain release factor RF-3 0.44 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase low > 61
Escherichia coli ECOR38 0.62 HEPCGN_09285 prfC peptide chain release factor 3 0.44 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_03687 Peptide chain release factor RF3 0.44 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.83 9
Escherichia coli ECOR27 0.62 NOLOHH_03600 prfC peptide chain release factor 3 0.44 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia fergusonii Becca 0.62 EFB2_04072 Peptide chain release factor RF3 0.44 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Escherichia coli ECRC100 0.62 OKFHMN_11280 prfC peptide chain release factor 3 0.44 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 80
Escherichia coli ECRC101 0.62 MCAODC_01795 prfC peptide chain release factor 3 0.44 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Serratia liquefaciens MT49 0.62 IAI46_02875 peptide chain release factor 3 0.43 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF1035 Peptide chain release factor 3 0.44 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_05420 peptide chain release factor 3 0.40 AO353_01405 23S rRNA pseudouridylate synthase low > 101
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_07285 peptide chain release factor 3 0.42 AO356_20125 23S rRNA pseudouridylate synthase — —
Pseudomonas simiae WCS417 0.62 PS417_04030 peptide chain release factor 3 0.41 PS417_21480 23S rRNA pseudouridylate synthase — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.41 Psyr_1639 ribosomal large subunit pseudouridine synthase C — —
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_3327 Peptide chain release factor 3 0.42 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Dickeya dianthicola ME23 0.62 DZA65_RS02505 peptide chain release factor 3 0.40 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) 0.41 Psyr_1639 ribosomal large subunit pseudouridine synthase C — —
Shewanella amazonensis SB2B 0.62 Sama_0968 prfC peptide chain release factor 3 (RefSeq) 0.42 Sama_1988 pseudouridylate synthase (RefSeq) low > 62
Pseudomonas sp. RS175 0.62 PFR28_00118 Peptide chain release factor RF3 0.42 PFR28_03018 Ribosomal large subunit pseudouridine synthase C — —
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS04070 peptide chain release factor 3 0.41 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas fluorescens SBW25 0.62 PFLU_RS04070 peptide chain release factor 3 0.41 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pectobacterium carotovorum WPP14 0.62 HER17_RS19065 peptide chain release factor 3 0.44 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Dickeya dianthicola 67-19 0.61 HGI48_RS02400 peptide chain release factor 3 0.40 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_03470 peptide chain release factor 3 0.40 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 62
Erwinia tracheiphila SCR3 0.61 LU632_RS02475 prfC peptide chain release factor 3 0.45 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Rahnella sp. WP5 0.61 EX31_RS04095 peptide chain release factor 3 0.43 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Alteromonas macleodii MIT1002 0.61 MIT1002_01192 Peptide chain release factor 3 0.44 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C low > 70
Acinetobacter radioresistens SK82 0.60 MPMX26_00476 Peptide chain release factor RF3 0.34 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.58 GFF768 Peptide chain release factor 3 0.48 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 90
Azospirillum brasilense Sp245 0.57 AZOBR_RS14730 peptide chain release factor 3 0.21 AZOBR_RS06905 pseudouridine synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) 0.64 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.44 7
Paraburkholderia graminis OAS925 0.57 ABIE53_004717 peptide chain release factor 3 0.65 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase low > 113
Magnetospirillum magneticum AMB-1 0.56 AMB_RS01375 peptide chain release factor 3 0.21 AMB_RS15620 RluA family pseudouridine synthase — —
Castellaniella sp019104865 MT123 0.56 ABCV34_RS12505 peptide chain release factor 3 0.47 ABCV34_RS08415 RluA family pseudouridine synthase low > 48
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS17200 peptide chain release factor 3 0.64 QEN71_RS04500 RluA family pseudouridine synthase low > 153
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS34275 peptide chain release factor 3 0.64 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C low > 109
Rhodospirillum rubrum S1H 0.55 Rru_A2497 Peptide chain release factor 3 (NCBI) 0.22 Rru_A2659 Pseudouridine synthase, RluD (NCBI) — —
Azospirillum sp. SherDot2 0.55 MPMX19_01192 Peptide chain release factor 3 0.23 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C — —
Variovorax sp. SCN45 0.54 GFF2045 Peptide chain release factor 3 0.46 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) low > 127
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_1130 Peptide chain release factor 3 0.40 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Acidovorax sp. GW101-3H11 0.53 Ac3H11_3041 Peptide chain release factor 3 0.48 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Sinorhizobium meliloti 1021 0.51 SMc00427 peptide chain release factor RF-3 protein 0.23 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.61 5
Phaeobacter inhibens DSM 17395 0.51 PGA1_c10620 peptide chain release factor 3 0.22 PGA1_c01950 ribosomal large subunit pseudouridine synthase C — —
Rhizobium sp. OAE497 0.51 ABIE40_RS01450 peptide chain release factor 3 0.23 ABIE40_RS09915 RluA family pseudouridine synthase low > 107
Agrobacterium fabrum C58 0.50 Atu0315 peptide chain release factor 3 0.22 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Dinoroseobacter shibae DFL-12 0.50 Dshi_1336 peptide chain release factor 3 (RefSeq) 0.20 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) low > 64
Caulobacter crescentus NA1000 Δfur 0.47 CCNA_01123 peptide chain release factor RF-3 0.20 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 67
Caulobacter crescentus NA1000 0.47 CCNA_01123 peptide chain release factor RF-3 0.20 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS15275 peptide chain release factor 3 0.19 A4249_RS07865 RluA family pseudouridine synthase low > 48

Not shown: 14 genomes with orthologs for RR42_RS37475 only; 1 genomes with orthologs for RR42_RS14155 only