| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Paraburkholderia sabiae LMG 24235 | 1.0 | QEN71_RS03635 | | radical SAM family heme chaperone HemW | 1.0 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.78 | 11 |
| Paraburkholderia graminis OAS925 | 0.89 | ABIE53_003236 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.81 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.89 | H281DRAFT_04010 | | oxygen-independent coproporphyrinogen-3 oxidase | 0.81 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.88 | BPHYT_RS15335 | | coproporphyrinogen III oxidase | 0.81 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.70 | RR42_RS04880 | | coproporphyrinogen III oxidase | 0.60 | RR42_RS14155 | | pseudouridine synthase | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.69 | HSERO_RS10665 | | coproporphyrinogen III oxidase | 0.59 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | low | > 78 |
| Ralstonia solanacearum PSI07 | 0.68 | RPSI07_RS13830 | | oxygen-independent coproporphyrinogen III oxidase-like protein | 0.59 | RPSI07_RS19085 | | RluA family pseudouridine synthase | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.67 | ABZR87_RS15265 | | radical SAM family heme chaperone HemW | 0.62 | ABZR87_RS10090 | | RluA family pseudouridine synthase | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.67 | RS_RS10840 | | oxygen-independent coproporphyrinogen III oxidase-like protein | 0.59 | RS_RS05155 | | RluA family pseudouridine synthase | 0.28 | 41 |
| Ralstonia solanacearum IBSBF1503 | 0.67 | RALBFv3_RS03355 | | oxygen-independent coproporphyrinogen III oxidase-like protein | 0.60 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | 0.48 | 6 |
| Ralstonia solanacearum UW163 | 0.67 | UW163_RS10365 | | oxygen-independent coproporphyrinogen III oxidase-like protein | 0.60 | UW163_RS11840 | | RluA family pseudouridine synthase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.62 | GFF3256 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.48 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 90 |
| Variovorax sp. OAS795 | 0.61 | ABID97_RS23630 | | radical SAM family heme chaperone HemW | 0.45 | ABID97_RS08250 | | RluA family pseudouridine synthase | low | > 91 |
| Variovorax sp. SCN45 | 0.60 | GFF2383 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | 0.46 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.57 | Ac3H11_3672 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.48 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 79 |
| Dechlorosoma suillum PS | 0.55 | Dsui_0491 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.51 | Dsui_2437 | | pseudouridine synthase, RluA family | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.54 | ABCV34_RS03525 | | radical SAM family heme chaperone HemW | 0.45 | ABCV34_RS08415 | | RluA family pseudouridine synthase | low | > 48 |
| Kangiella aquimarina DSM 16071 | 0.48 | B158DRAFT_0201 | | coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22) | 0.40 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | low | > 40 |
| Lysobacter sp. OAE881 | 0.48 | ABIE51_RS17300 | | radical SAM family heme chaperone HemW | 0.33 | ABIE51_RS11800 | | RluA family pseudouridine synthase | low | > 62 |
| Pseudomonas fluorescens SBW25 | 0.48 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | 0.40 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.48 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | 0.40 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.47 | Xcc-8004.1224.1 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.32 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.37 | 58 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_26760 | | oxidase | 0.40 | PS417_21480 | | 23S rRNA pseudouridylate synthase | 0.44 | 3 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_2334 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.38 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_08200 | | coproporphyrinogen III oxidase | 0.39 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.72 | 3 |
| Pseudomonas fluorescens FW300-N2E2 | 0.47 | Pf6N2E2_4593 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.40 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.43 | 1 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_1003 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.39 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.55 | 2 |
| Pseudomonas sp. S08-1 | 0.47 | OH686_11020 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | 0.38 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | low | > 80 |
| Serratia liquefaciens MT49 | 0.47 | IAI46_21435 | | radical SAM family heme chaperone HemW | 0.42 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 86 |
| Enterobacter sp. TBS_079 | 0.47 | MPMX20_03813 | | Heme chaperone HemW | 0.44 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | low | > 85 |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_2993 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.44 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | low | > 76 |
| Pseudomonas putida KT2440 | 0.47 | PP_5101 | | coproporphyrinogen/heterocyclic compound oxidase (aerobic) | 0.39 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | low | > 96 |
| Escherichia coli BL21 | 0.46 | ECD_02785 | | HemN family putative oxidoreductase | 0.44 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | low | > 61 |
| Escherichia coli BW25113 | 0.46 | b2955 | yggW | coproporphyrinogen III oxidase (NCBI) | 0.44 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | 0.31 | 3 |
| Escherichia coli ECOR27 | 0.46 | NOLOHH_11105 | hemW | radical SAM family heme chaperone HemW | 0.44 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia fergusonii Becca | 0.46 | EFB2_00947 | | Heme chaperone HemW | 0.44 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Escherichia coli ECRC62 | 0.46 | BNILDI_09685 | hemW | radical SAM family heme chaperone HemW | 0.44 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.46 | OHPLBJKB_00761 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR | 0.44 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 0.86 | 1 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_1188 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | 0.43 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | low | > 73 |
| Escherichia coli ECRC100 | 0.46 | OKFHMN_19235 | hemW | radical SAM family heme chaperone HemW | 0.43 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 80 |
| Escherichia coli ECOR38 | 0.46 | HEPCGN_18540 | hemW | radical SAM family heme chaperone HemW | 0.44 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 87 |
| Escherichia coli ECRC99 | 0.46 | KEDOAH_08905 | hemW | radical SAM family heme chaperone HemW | 0.43 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECRC102 | 0.46 | NIAGMN_17000 | hemW | radical SAM family heme chaperone HemW | 0.43 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECRC98 | 0.46 | JDDGAC_22865 | hemW | radical SAM family heme chaperone HemW | 0.43 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 86 |
| Escherichia coli ECRC101 | 0.46 | MCAODC_09755 | hemW | radical SAM family heme chaperone HemW | 0.43 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.54 | 44 |
| Escherichia coli Nissle 1917 | 0.46 | ECOLIN_RS16435 | | radical SAM family heme chaperone HemW | 0.43 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 55 |
| Pseudomonas stutzeri RCH2 | 0.46 | Psest_0276 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.39 | Psest_1680 | | pseudouridine synthase, RluA family | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_13390 | | coproporphyrinogen III oxidase | 0.40 | AO356_20125 | | 23S rRNA pseudouridylate synthase | 0.56 | 2 |
| Dickeya dadantii 3937 | 0.46 | DDA3937_RS17325 | | radical SAM family heme chaperone HemW | 0.40 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.64 | 73 |
| Pseudomonas sp. RS175 | 0.45 | PFR28_04249 | | Heme chaperone HemW | 0.40 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | low | > 88 |
| Pectobacterium carotovorum WPP14 | 0.45 | HER17_RS03785 | | radical SAM family heme chaperone HemW | 0.42 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Dickeya dianthicola 67-19 | 0.45 | HGI48_RS17370 | | radical SAM family heme chaperone HemW | 0.39 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 71 |
| Klebsiella michiganensis M5al | 0.45 | BWI76_RS24120 | | YggW family oxidoreductase | 0.44 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 92 |
| Dickeya dianthicola ME23 | 0.45 | DZA65_RS18460 | | radical SAM family heme chaperone HemW | 0.39 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.45 | LU632_RS05445 | hemW | radical SAM family heme chaperone HemW | 0.45 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.45 | GFF3058 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.44 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.75 | 59 |
| Rahnella sp. WP5 | 0.45 | EX31_RS02710 | | radical SAM family heme chaperone HemW | 0.44 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 89 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS11460 | | radical SAM family heme chaperone HemW | 0.36 | LRK55_RS17750 | | RluA family pseudouridine synthase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS11735 | | radical SAM family heme chaperone HemW | 0.36 | LRK54_RS17895 | | RluA family pseudouridine synthase | 0.63 | 2 |
| Pseudomonas syringae pv. syringae B728a | 0.44 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | 0.39 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.44 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | 0.39 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pantoea sp. MT58 | 0.44 | IAI47_03580 | | radical SAM family heme chaperone HemW | 0.42 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.43 | ABZR86_RS11910 | | radical SAM family heme chaperone HemW | 0.33 | ABZR86_RS02725 | | RluA family pseudouridine synthase | low | > 74 |
| Shewanella loihica PV-4 | 0.43 | Shew_1131 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | 0.42 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Rhodanobacter sp. FW510-T8 | 0.42 | OKGIIK_12160 | hemW | radical SAM family heme chaperone HemW | 0.36 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.75 | 25 |
| Shewanella amazonensis SB2B | 0.42 | Sama_2483 | | oxygen-independent coproporphyrinogen III oxidase, putative (RefSeq) | 0.42 | Sama_1988 | | pseudouridylate synthase (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.42 | CSW01_02425 | | YggW family oxidoreductase | 0.39 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 62 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_280 | | putative oxygen-independent coproporphyrinogen III oxidase | 0.39 | HP15_2221 | | pseudouridine synthase, RluA family | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.40 | MIT1002_00939 | | Oxygen-independent coproporphyrinogen-III oxidase 1 | 0.43 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | low | > 70 |
| Acinetobacter radioresistens SK82 | 0.38 | MPMX26_00308 | | Heme chaperone HemW | 0.35 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | low | > 36 |
| Azospirillum sp. SherDot2 | 0.32 | MPMX19_02574 | | Heme chaperone HemW | 0.19 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.31 | PGA1_c35050 | | oxygen-independent coproporphyrinogen III oxidase HemN | 0.21 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Azospirillum brasilense Sp245 | 0.31 | AZOBR_RS02195 | | coproporphyrinogen III oxidase | 0.18 | AZOBR_RS06905 | | pseudouridine synthase | 0.31 | 52 |
| Agrobacterium fabrum C58 | 0.30 | Atu0325 | | oxygen-independent coproporphyrinogen III oxidase | 0.21 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Rhizobium sp. OAE497 | 0.30 | ABIE40_RS01625 | | radical SAM family heme chaperone HemW | 0.20 | ABIE40_RS09915 | | RluA family pseudouridine synthase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.30 | Dshi_3460 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | 0.19 | Dshi_0315 | | pseudouridine synthase, RluA family (RefSeq) | low | > 64 |
| Rhodospirillum rubrum S1H | 0.29 | Rru_A3639 | | Putative oxygen-independent coproporphyrinogen III oxidase (NCBI) | 0.20 | Rru_A2659 | | Pseudouridine synthase, RluD (NCBI) | — | — |
| Sinorhizobium meliloti 1021 | 0.28 | SMc01147 | | coproporphyrinogen III oxidase | 0.21 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | low | > 103 |
| Caulobacter crescentus NA1000 | 0.25 | CCNA_00144 | | oxygen-independent coproporphyrinogen-III oxidase | 0.19 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.25 | CCNA_00144 | | oxygen-independent coproporphyrinogen-III oxidase | 0.19 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | low | > 67 |
Not shown: 15 genomes with orthologs for QEN71_RS03635 only; 1 genomes with orthologs for QEN71_RS04500 only