Conservation of cofitness between Psyr_4739 and Psyr_4687 in Pseudomonas syringae pv. syringae B728a

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4739 tRNA (guanine-N(7)-)-methyltransferase 1.0 Psyr_4687 biotin synthase 0.40 20
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4739 tRNA (guanine-N(7)-)-methyltransferase 1.00 Psyr_4687 biotin synthase low > 86
Pseudomonas sp. SVBP6 0.85 COO64_RS12955 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.94 COO64_RS22725 bioB biotin synthase BioB low > 93
Pseudomonas sp. RS175 0.85 PFR28_04251 tRNA (guanine-N(7)-)-methyltransferase 0.94 PFR28_04103 Biotin synthase low > 88
Pseudomonas sp. BP01 0.85 JOY50_RS20865 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.93 JOY50_RS17930 bioB biotin synthase BioB low > 84
Pseudomonas putida KT2440 0.85 PP_5103 tRNA (guanine-N(7)-)-methyltransferase 0.94 PP_0362 Biotin synthase low > 96
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_13380 tRNA (guanine-N7)-methyltransferase 0.95 AO356_14135 biotin synthase low > 104
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_2332 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) 0.95 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) — —
Pseudomonas sp. DMC3 0.84 GFF218 tRNA (guanine-N(7)-)-methyltransferase 0.94 GFF76 Biotin synthase low > 89
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_4591 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) 0.95 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) low > 103
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_08210 tRNA (guanine-N7)-methyltransferase 0.94 AO353_07525 biotin synthase low > 101
Pseudomonas simiae WCS417 0.83 PS417_26770 tRNA (guanine-N7)-methyltransferase 0.95 PS417_26005 biotin synthase low > 88
Pseudomonas fluorescens GW456-L13 0.83 PfGW456L13_1001 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) 0.95 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas orientalis W4I3 0.83 QF045_RS01170 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.94 QF045_RS00415 biotin synthase BioB low > 93
Pseudomonas lactucae CFBP13502 0.83 GEMAOFIL_05491 tRNA (guanine-N(7)-)-methyltransferase 0.94 GEMAOFIL_05322 Biotin synthase low > 96
Pseudomonas fluorescens SBW25 0.82 PFLU_RS28415 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.95 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS28415 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.95 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas segetis P6 0.77 MPMX49_04406 tRNA (guanine-N(7)-)-methyltransferase 0.89 MPMX49_00759 Biotin synthase low > 75
Pseudomonas aeruginosa PA14 0.76 IKLFDK_23515 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.89 IKLFDK_22935 biotin synthase BioB low > 98
Pseudomonas stutzeri RCH2 0.76 Psest_0268 tRNA (guanine-N(7)-)-methyltransferase 0.89 Psest_0411 biotin synthetase low > 67
Pseudomonas aeruginosa PUPa3 0.75 DQ20_RS37410 trmB;go_function=tRNA tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.89 DQ20_RS36825 bioB;go_function=biotin biotin synthase BioB low > 101
Pseudomonas aeruginosa MRSN321 0.75 DY961_RS21885 trmB;go_function=tRNA tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.89 DY961_RS22505 bioB;go_function=biotin biotin synthase BioB — —
Pseudomonas sp. S08-1 0.74 OH686_14290 tRNA (guanine-N(7)-)-methyltransferase 0.89 OH686_10355 biotin synthase low > 80
Klebsiella pneumoniae MKP103 0.60 KDGMDA_04650 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 KDGMDA_17025 biotin synthase BioB low > 95
Enterobacter sp. TBS_079 0.60 MPMX20_03817 tRNA (guanine-N(7)-)-methyltransferase 0.65 MPMX20_01403 Biotin synthase low > 85
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2997 tRNA (guanine-N(7)-)-methyltransferase 0.65 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) low > 76
Klebsiella michiganensis M5al 0.59 BWI76_RS24150 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.67 BWI76_RS08760 biotin synthase low > 92
Shewanella amazonensis SB2B 0.59 Sama_2489 trmB tRNA (guanine-N(7)-)-methyltransferase (RefSeq) 0.66 Sama_1438 biotin synthase (RefSeq) — —
Shewanella loihica PV-4 0.59 Shew_1124 trmB tRNA (guanine-N(7))-methyltransferase (RefSeq) 0.65 Shew_1719 biotin synthase (RefSeq) — —
Escherichia coli ECRC62 0.58 BNILDI_09650 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 BNILDI_21040 bioB biotin synthase BioB low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF3064 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) 0.65 GFF671 Biotin synthase (EC 2.8.1.6) low > 78
Escherichia coli Nissle 1917 0.58 ECOLIN_RS16465 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 ECOLIN_RS04130 biotin synthase BioB low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_00756 tRNA (guanine-N(7)-)-methyltransferase 0.66 OHPLBJKB_02938 Biotin synthase low > 74
Escherichia coli BW25113 0.58 b2960 yggH tRNA(m7G46)-methyltransferase (NCBI) 0.66 b0775 bioB biotin synthase (NCBI) low > 76
Escherichia coli ECOR27 0.58 NOLOHH_11065 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 NOLOHH_22770 bioB biotin synthase BioB low > 76
Escherichia coli BL21 0.58 ECD_02790 tRNA m(7)G46 methyltransferase, SAM-dependent 0.66 ECD_00742 biotin synthase low > 61
Escherichia coli ECOR38 0.58 HEPCGN_18475 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 HEPCGN_01640 bioB biotin synthase BioB low > 88
Escherichia coli ECRC102 0.58 NIAGMN_16970 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 NIAGMN_04445 bioB biotin synthase BioB low > 80
Escherichia fergusonii Becca 0.58 EFB2_00942 tRNA (guanine-N(7)-)-methyltransferase 0.66 EFB2_03330 Biotin synthase low > 86
Escherichia coli ECRC98 0.58 JDDGAC_22835 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 JDDGAC_10035 bioB biotin synthase BioB low > 87
Escherichia coli ECRC101 0.58 MCAODC_09725 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 MCAODC_25615 bioB biotin synthase BioB low > 87
Escherichia coli ECRC100 0.58 OKFHMN_19205 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 OKFHMN_06400 bioB biotin synthase BioB low > 79
Escherichia coli ECRC99 0.58 KEDOAH_08935 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 KEDOAH_21510 bioB biotin synthase BioB — —
Alteromonas macleodii MIT1002 0.58 MIT1002_00237 tRNA (guanine-N(7)-)-methyltransferase 0.69 MIT1002_01379 Biotin synthase low > 70
Shewanella sp. ANA-3 0.58 Shewana3_1182 trmB tRNA (guanine-N(7)-)-methyltransferase (RefSeq) 0.66 Shewana3_2519 biotin synthase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO3367 conserved hypothetical protein TIGR00091 (NCBI ptt file) 0.66 SO2740 bioB biotin synthase (NCBI ptt file) — —
Dickeya dadantii 3937 0.57 DDA3937_RS04905 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.65 DDA3937_RS08510 biotin synthase BioB low > 74
Dickeya dianthicola ME23 0.57 DZA65_RS05250 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.65 DZA65_RS08965 biotin synthase BioB low > 75
Dickeya dianthicola 67-19 0.57 HGI48_RS04915 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.65 HGI48_RS08675 biotin synthase BioB low > 71
Serratia liquefaciens MT49 0.56 IAI46_21460 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.67 IAI46_06525 biotin synthase BioB low > 87
Pantoea sp. MT58 0.56 IAI47_03565 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 IAI47_13530 biotin synthase BioB low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS16620 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.65 HER17_RS13460 biotin synthase BioB low > 75
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS16130 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.66 PagCFBP13505_RS03770 biotin synthase BioB low > 74
Erwinia tracheiphila SCR3 0.56 LU632_RS05425 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.67 LU632_RS09130 bioB biotin synthase BioB — —
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_03485 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.67 IJEDHG_19565 bioB biotin synthase BioB — —
Erwinia amylovora T8 0.56 OLJFJH_08500 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.67 OLJFJH_16760 biotin synthase BioB low > 58
Marinobacter adhaerens HP15 0.55 HP15_278 tRNA (guanine-N(7)-)-methyltransferase 0.71 HP15_2486 biotin synthase low > 73
Rahnella sp. WP5 0.55 EX31_RS02730 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.67 EX31_RS23695 biotin synthase BioB low > 89
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_02415 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.69 CSW01_05645 biotin synthase low > 62
Kangiella aquimarina DSM 16071 0.54 B158DRAFT_0203 tRNA (guanine-N(7)-)-methyltransferase 0.66 B158DRAFT_0864 biotin synthase (EC 2.8.1.6) — —
Paraburkholderia graminis OAS925 0.51 ABIE53_003260 tRNA (guanine-N7-)-methyltransferase 0.58 ABIE53_000577 biotin synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04036 tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) 0.58 H281DRAFT_02097 biotin synthase low > 103
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS15470 tRNA (guanine-N(7)-)-methyltransferase 0.58 BPHYT_RS02150 biotin synthase low > 109
Methylophilus sp. DMC18 0.49 GFF1545 tRNA (guanine-N(7)-)-methyltransferase 0.54 GFF1682 Biotin synthase — —
Rhodanobacter sp000427505 FW510-R12 0.49 LRK53_RS16550 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.55 LRK53_RS03040 biotin synthase BioB low > 59
Lysobacter sp. OAE881 0.49 ABIE51_RS16550 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.59 ABIE51_RS01140 biotin synthase BioB low > 62
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_11900 trmB tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.55 OKGIIK_13650 bioB biotin synthase BioB low > 53
Rhodanobacter denitrificans MT42 0.48 LRK55_RS11710 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.55 LRK55_RS09900 biotin synthase BioB low > 63
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS11985 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.55 LRK54_RS10260 biotin synthase BioB low > 59
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS03220 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.58 QEN71_RS01085 biotin synthase BioB — —
Variovorax sp. SCN45 0.47 GFF593 tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33) 0.52 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS11650 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.58 ABZR86_RS15840 biotin synthase BioB low > 74
Variovorax sp. OAS795 0.46 ABID97_RS18030 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.51 ABID97_RS13955 biotin synthase BioB low > 91
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS02470 tRNA (guanine-N7)-methyltransferase 0.51 HSERO_RS12235 biotin synthase low > 78
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS12755 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.60 RALBFv3_RS10465 biotin synthase BioB low > 76
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS08805 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.60 ABZR87_RS06265 biotin synthase BioB 0.53 80
Ralstonia solanacearum UW163 0.45 UW163_RS00810 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.60 UW163_RS03115 biotin synthase BioB — —
Ralstonia solanacearum PSI07 0.45 RPSI07_RS20505 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.60 RPSI07_RS22850 biotin synthase BioB low > 81
Ralstonia solanacearum GMI1000 0.45 RS_RS03535 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.60 RS_RS01305 biotin synthase low > 80
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS15625 tRNA (guanine-N7)-methyltransferase 0.57 RR42_RS00940 biotin synthase low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF5184 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) 0.54 GFF3992 Biotin synthase (EC 2.8.1.6) low > 90
Dechlorosoma suillum PS 0.43 Dsui_1016 tRNA (guanine-N(7)-)-methyltransferase 0.52 Dsui_1297 biotin synthetase low > 51
Acidovorax sp. GW101-3H11 0.43 Ac3H11_4163 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) 0.52 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) low > 79
Castellaniella sp019104865 MT123 0.42 ABCV34_RS08995 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.55 ABCV34_RS15280 biotin synthase BioB low > 48
Acinetobacter radioresistens SK82 0.38 MPMX26_01105 tRNA (guanine-N(7)-)-methyltransferase 0.58 MPMX26_01785 Biotin synthase low > 36
Acinetobacter baumannii LAC-4 0.37 RR41_RS10130 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.60 RR41_RS11800 biotin synthase BioB — —
Mycobacterium tuberculosis H37Rv 0.27 Rv0208c Hypothetical methlytransferase (methylase) 0.25 Rv1589 Probable biotin synthetase BioB low > 58
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1620 Predicted S-adenosylmethionine-dependent methyltransferase 0.55 Ga0059261_3989 biotin synthase (EC 2.8.1.6) low > 68
Sphingobium sp. HT1-2 0.24 GFF1611 tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33) 0.53 GFF133 Biotin synthase (EC 2.8.1.6) low > 95
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_00047 tRNA m7-G46 methyltransferase 0.53 CCNA_03636 biotin synthase low > 67
Caulobacter crescentus NA1000 0.24 CCNA_00047 tRNA m7-G46 methyltransferase 0.53 CCNA_03636 biotin synthase low > 66
Agrobacterium fabrum C58 0.19 Atu0363 putative tRNA (guanine-N(7)-)-methyltransferase 0.57 Atu3997 biotin synthetase 0.15 85
Rhizobium sp. OAE497 0.18 ABIE40_RS01670 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.55 ABIE40_RS21075 biotin synthase BioB low > 107
Xanthobacter sp. DMC5 0.15 GFF3726 tRNA (guanine-N(7)-)-methyltransferase 0.47 GFF256 Biotin synthase — —

Not shown: 5 genomes with orthologs for Psyr_4739 only; 18 genomes with orthologs for Psyr_4687 only