Conservation of cofitness between Pf6N2E2_2645 and Pf6N2E2_4197 in Pseudomonas fluorescens FW300-N2E2

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 1.0 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.38 5
Pseudomonas fluorescens FW300-N2C3 0.99 AO356_04050 ATP-dependent DNA helicase RecQ 1.00 AO356_11635 recombinase RecF 0.24 25
Pseudomonas sp. RS175 0.98 PFR28_00788 ATP-dependent DNA helicase RecQ 0.99 PFR28_04593 DNA replication and repair protein RecF low > 88
Pseudomonas fluorescens FW300-N1B4 0.96 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.99 Pf1N1B4_1927 DNA recombination and repair protein RecF low > 87
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_18430 ATP-dependent DNA helicase RecQ 0.98 AO353_10480 recombinase RecF 0.46 6
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.99 PfGW456L13_664 DNA recombination and repair protein RecF 0.38 10
Pseudomonas sp. DMC3 0.95 GFF2380 ATP-dependent DNA helicase RecQ 0.99 GFF578 DNA replication and repair protein RecF low > 89
Pseudomonas simiae WCS417 0.95 PS417_19950 ATP-dependent DNA helicase RecQ 0.92 PS417_00015 recombinase RecF low > 88
Pseudomonas fluorescens SBW25-INTG 0.94 PFLU_RS21920 DNA helicase RecQ 0.96 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas fluorescens SBW25 0.94 PFLU_RS21920 DNA helicase RecQ 0.96 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas lactucae CFBP13502 0.94 GEMAOFIL_04187 ATP-dependent DNA helicase RecQ 0.96 GEMAOFIL_00183 DNA replication and repair protein RecF low > 93
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3738 ATP-dependent DNA helicase RecQ 0.94 Psyr_0003 DNA replication and repair protein RecF 0.57 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3738 ATP-dependent DNA helicase RecQ 0.94 Psyr_0003 DNA replication and repair protein RecF 0.38 24
Pseudomonas sp. SVBP6 0.88 COO64_RS21845 recQ DNA helicase RecQ 0.96 COO64_RS02120 recF DNA replication/repair protein RecF low > 93
Pseudomonas stutzeri RCH2 0.86 Psest_1869 ATP-dependent DNA helicase RecQ 0.78 Psest_0004 recF protein 0.61 3
Pseudomonas sp. BP01 0.86 JOY50_RS01155 recQ DNA helicase RecQ 0.92 JOY50_RS08340 recF DNA replication/repair protein RecF low > 84
Pseudomonas putida KT2440 0.85 PP_4516 ATP-dependent DNA 3 0.91 PP_0012 DNA replication and repair protein low > 96
Pseudomonas segetis P6 0.85 MPMX49_02936 ATP-dependent DNA helicase RecQ 0.88 MPMX49_00255 DNA replication and repair protein RecF low > 75
Pseudomonas sp. S08-1 0.84 OH686_20670 ATP-dependent DNA helicase RecQ 0.84 OH686_12620 DNA recombination and repair protein RecF low > 80
Pseudomonas aeruginosa PA14 0.81 IKLFDK_17145 DNA helicase RecQ 0.83 IKLFDK_25545 DNA replication/repair protein RecF low > 100
Marinobacter adhaerens HP15 0.52 HP15_1718 ATP-dependent DNA helicase RecQ 0.37 HP15_3705 DNA replication and repair protein recF low > 73
Rhodanobacter sp000427505 FW510-R12 0.50 LRK53_RS15600 DNA helicase RecQ 0.27 LRK53_RS00015 DNA replication/repair protein RecF low > 59
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS13000 DNA helicase RecQ 0.28 LRK54_RS08475 DNA replication/repair protein RecF low > 59
Rhodanobacter denitrificans MT42 0.50 LRK55_RS12700 DNA helicase RecQ 0.28 LRK55_RS08240 DNA replication/repair protein RecF low > 63
Azospirillum sp. SherDot2 0.50 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.14 MPMX19_02716 DNA replication and repair protein RecF — —
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_02375 recQ DNA helicase RecQ 0.28 OKGIIK_15255 recF DNA replication/repair protein RecF low > 53
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS19925 DNA helicase RecQ 0.26 ABZR86_RS15145 DNA replication/repair protein RecF 0.36 40
Azospirillum brasilense Sp245 0.49 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.12 AZOBR_RS17670 recombinase RecF 0.52 26
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.24 Xcc-8004.4.1 DNA recombination and repair protein RecF low > 74
Magnetospirillum magneticum AMB-1 0.48 AMB_RS21505 DNA helicase RecQ 0.12 AMB_RS03285 DNA replication and repair protein RecF — —
Xanthobacter sp. DMC5 0.47 GFF753 ATP-dependent DNA helicase RecQ 0.11 GFF3876 DNA replication and repair protein RecF — —
Rhizobium sp. OAE497 0.46 ABIE40_RS12745 DNA helicase RecQ 0.15 ABIE40_RS00200 DNA replication/repair protein RecF low > 107
Lysobacter sp. OAE881 0.46 ABIE51_RS05145 DNA helicase RecQ 0.25 ABIE51_RS00765 DNA replication/repair protein RecF low > 62
Rhodopseudomonas palustris CGA009 0.46 TX73_025080 DNA helicase RecQ 0.11 TX73_000015 DNA replication/repair protein RecF low > 86
Sinorhizobium meliloti 1021 0.44 SMc01566 ATP-dependent DNA helicase 0.13 SMc02863 recombination protein F low > 103
Agrobacterium fabrum C58 0.43 Atu0061 ATP-dependent DNA helicase 0.15 Atu0073 recF-like protein low > 89
Pantoea sp. MT58 0.40 IAI47_18360 ATP-dependent DNA helicase RecQ 0.37 IAI47_00015 DNA replication/repair protein RecF 0.34 22
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_01045 DNA helicase RecQ 0.37 CSW01_00065 DNA replication and repair protein RecF low > 62
Enterobacter asburiae PDN3 0.40 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.37 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Phaeobacter inhibens DSM 17395 0.40 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.12 PGA1_c00030 DNA replication and repair protein RecF low > 62
Enterobacter sp. TBS_079 0.40 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.37 MPMX20_00003 DNA replication and repair protein RecF low > 85
Escherichia coli ECRC102 0.40 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.38 NIAGMN_12780 recF DNA replication/repair protein RecF 0.93 1
Escherichia coli ECOR27 0.40 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.38 NOLOHH_07165 recF DNA replication/repair protein RecF 0.37 63
Escherichia coli Nissle 1917 0.40 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.38 ECOLIN_RS21310 DNA replication/repair protein RecF 0.28 36
Escherichia fergusonii Becca 0.40 EFB2_04815 ATP-dependent DNA helicase RecQ 0.38 EFB2_00003 DNA replication and repair protein RecF low > 86
Escherichia coli ECRC101 0.40 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.38 MCAODC_05535 recF DNA replication/repair protein RecF 0.26 86
Escherichia coli ECRC98 0.40 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.38 JDDGAC_18645 recF DNA replication/repair protein RecF low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 0.38 OHPLBJKB_00003 DNA replication and repair protein RecF low > 74
Escherichia coli ECRC62 0.40 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 0.38 BNILDI_04365 recF DNA replication/repair protein RecF low > 75
Escherichia coli ECRC100 0.40 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.38 OKFHMN_15025 recF DNA replication/repair protein RecF low > 79
Escherichia coli BW25113 0.40 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.38 b3700 recF recombination protein F (NCBI) 0.41 2
Escherichia coli ECOR38 0.40 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.38 HEPCGN_13720 recF DNA replication/repair protein RecF 0.60 8
Escherichia coli ECRC99 0.40 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.38 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Pantoea agglomerans CFBP13505 P0401 0.40 PagCFBP13505_RS15340 ATP-dependent DNA helicase RecQ 0.37 PagCFBP13505_RS19305 DNA replication/repair protein RecF low > 74
Escherichia coli BL21 0.40 ECD_03701 ATP-dependent DNA helicase 0.38 ECD_03583 gap repair protein 0.76 5
Klebsiella pneumoniae MKP103 0.39 KDGMDA_09735 ATP-dependent DNA helicase RecQ 0.37 KDGMDA_08670 DNA replication/repair protein RecF 0.31 79
Dickeya dianthicola ME23 0.39 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.38 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Dickeya dianthicola 67-19 0.39 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.38 HGI48_RS00015 DNA replication/repair protein RecF low > 71
Shewanella sp. ANA-3 0.39 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.41 Shewana3_0011 recF recombination protein F (RefSeq) 0.82 2
Dickeya dadantii 3937 0.39 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.38 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Serratia liquefaciens MT49 0.39 IAI46_00770 ATP-dependent DNA helicase RecQ 0.38 IAI46_00015 DNA replication/repair protein RecF 0.72 7
Klebsiella michiganensis M5al 0.39 BWI76_RS01245 DNA helicase RecQ 0.36 BWI76_RS00010 DNA replication and repair protein RecF low > 92
Rahnella sp. WP5 0.39 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.38 EX31_RS05975 DNA replication/repair protein RecF low > 89
Shewanella oneidensis MR-1 0.39 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.42 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.44 12
Pectobacterium carotovorum WPP14 0.39 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.39 HER17_RS00015 DNA replication/repair protein RecF low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF248 ATP-dependent DNA helicase RecQ 0.37 GFF1756 DNA recombination and repair protein RecF 0.63 7
Alteromonas macleodii MIT1002 0.39 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.35 MIT1002_00003 DNA replication and repair protein RecF low > 70
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS20865 DNA helicase RecQ 0.14 ABZR88_RS21650 DNA replication/repair protein RecF low > 71
Erwinia amylovora T8 0.39 OLJFJH_06445 ATP-dependent DNA helicase RecQ 0.37 OLJFJH_05150 DNA replication/repair protein RecF low > 58
Shewanella loihica PV-4 0.38 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.40 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.75 7
Rhodospirillum rubrum S1H 0.38 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.10 Rru_A0003 RecF protein (NCBI) — —
Dinoroseobacter shibae DFL-12 0.38 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.11 Dshi_3375 SMC domain protein (RefSeq) 0.64 5
Erwinia tracheiphila HP pepo 2.2 0.38 IJEDHG_08740 recQ ATP-dependent DNA helicase RecQ 0.37 IJEDHG_09800 recF DNA replication/repair protein RecF low > 61
Erwinia tracheiphila SCR3 0.38 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.37 LU632_RS00015 recF DNA replication/repair protein RecF low > 74
Shewanella amazonensis SB2B 0.38 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.40 Sama_0015 recF recombination protein F (RefSeq) 0.79 3
Echinicola vietnamensis KMM 6221, DSM 17526 0.37 Echvi_0784 ATP-dependent DNA helicase RecQ 0.18 Echvi_1156 recF protein low > 79
Bosea sp. OAE506 0.36 ABIE41_RS04160 DNA helicase RecQ 0.14 ABIE41_RS04170 DNA replication/repair protein RecF low > 77
Pontibacter actiniarum KMM 6156, DSM 19842 0.36 CA264_07560 DNA helicase RecQ 0.12 CA264_17475 DNA replication and repair protein RecF 0.60 5
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.13 Ga0059261_2727 DNA replication and repair protein RecF — —
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS14585 DNA helicase RecQ 0.15 HMPREF1058_RS17135 DNA replication and repair protein RecF low > 67
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS10235 DNA helicase RecQ 0.15 ABI39_RS13135 DNA replication and repair protein RecF low > 72
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS14110 DNA helicase RecQ 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF low > 56
Sphingobium sp. HT1-2 0.33 GFF798 ATP-dependent DNA helicase RecQ 0.13 GFF730 DNA recombination and repair protein RecF low > 95
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS14575 DNA helicase RecQ 0.10 A4249_RS15360 DNA replication/repair protein RecF low > 48
Bacteroides thetaiotaomicron VPI-5482 0.33 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.17 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS01195 DNA helicase RecQ 0.17 HMPREF1078_RS14620 DNA replication and repair protein RecF low > 61
Bacteroides ovatus ATCC 8483 0.32 BACOVA_04594 ATP-dependent DNA helicase RecQ 0.17 BACOVA_05088 DNA replication and repair protein RecF low > 96
Cellulophaga baltica 18 0.32 M666_RS16920 DNA helicase RecQ 0.15 M666_RS11055 DNA replication and repair protein RecF 0.39 11
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS08905 DNA helicase RecQ 0.15 CA265_RS24760 DNA replication and repair protein RecF low > 88
Caulobacter crescentus NA1000 0.31 CCNA_03578 ATP-dependent DNA helicase recQ 0.11 CCNA_00158 DNA replication and repair protein recF 0.71 10
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_03578 ATP-dependent DNA helicase recQ 0.11 CCNA_00158 DNA replication and repair protein recF low > 67
Fusobacterium nucleatum SB010 0.29 HUW76_07235 DNA helicase RecQ 0.18 HUW76_00025 DNA replication/repair protein RecF — —
Bifidobacterium breve UCC2003 0.27 BBR_RS13150 DNA helicase RecQ 0.14 BBR_RS10265 DNA replication and repair protein RecF low > 34

Not shown: 17 genomes with orthologs for Pf6N2E2_2645 only; 6 genomes with orthologs for Pf6N2E2_4197 only