| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N1B4 | 1.0 | Pf1N1B4_3491 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 1.0 | Pf1N1B4_2611 | | Excinuclease ABC subunit A | 0.29 | 5 |
| Pseudomonas fluorescens FW300-N2E3 | 0.99 | AO353_02780 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.98 | AO353_06855 | | ABC-ATPase UvrA | 0.57 | 1 |
| Pseudomonas fluorescens GW456-L13 | 0.98 | PfGW456L13_2020 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.98 | PfGW456L13_1283 | | Excinuclease ABC subunit A | low | > 87 |
| Pseudomonas simiae WCS417 | 0.97 | PS417_16415 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.98 | PS417_25395 | | excinuclease ABC subunit A | 0.24 | 43 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.97 | Psyr_3705 | | conserved hypothetical protein | 0.95 | Psyr_4520 | | Excinuclease ABC subunit A | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.97 | Psyr_3705 | | conserved hypothetical protein | 0.95 | Psyr_4520 | | Excinuclease ABC subunit A | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.97 | PFLU_RS18455 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.98 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.97 | PFLU_RS18455 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.98 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | low | > 109 |
| Pseudomonas sp. RS175 | 0.96 | PFR28_03236 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.97 | PFR28_03974 | | UvrABC system protein A | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.96 | Pf6N2E2_5711 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.98 | Pf6N2E2_4888 | | Excinuclease ABC subunit A | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.96 | AO356_19000 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.98 | AO356_14785 | | ABC-ATPase UvrA | 0.45 | 2 |
| Pseudomonas putida KT2440 | 0.92 | PP_1641 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.93 | PP_0483 | | excinuclease (uvrABC system protein A) | — | — |
| Pseudomonas stutzeri RCH2 | 0.89 | Psest_3033 | | Predicted ATPase of the PP-loop superfamily implicated in cell cycle control | 0.90 | Psest_3576 | | excinuclease ABC, A subunit | low | > 67 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_05145 | | tRNA-(cytosine32)-2-thiocytidine synthetase TtcA | 0.92 | OH686_15495 | | excinuclease ABC subunit A | low | > 80 |
| Shewanella amazonensis SB2B | 0.72 | Sama_1801 | | hypothetical protein (RefSeq) | 0.75 | Sama_0514 | | excinuclease ABC, A subunit (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.72 | SO2354 | | conserved hypothetical protein (NCBI ptt file) | 0.75 | SO4030 | uvrA | excinuclease ABC, A subunit (NCBI ptt file) | low | > 76 |
| Kangiella aquimarina DSM 16071 | 0.71 | B158DRAFT_2154 | | tRNA s(2)C-32 sulfurtransferase (EC 2.8.1.4) | 0.76 | B158DRAFT_0885 | | excinuclease ABC, A subunit | low | > 40 |
| Erwinia tracheiphila SCR3 | 0.71 | LU632_RS12165 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.75 | LU632_RS23685 | uvrA | excinuclease ABC subunit UvrA | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.70 | CSW01_07180 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.76 | CSW01_02080 | | UvrABC system protein A | low | > 62 |
| Escherichia coli ECRC99 | 0.70 | KEDOAH_26600 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | KEDOAH_15255 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli BL21 | 0.70 | ECD_01321 | | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein | 0.77 | ECD_03930 | | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | low | > 61 |
| Escherichia coli ECRC101 | 0.70 | MCAODC_16100 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | MCAODC_03405 | uvrA | excinuclease ABC subunit UvrA | low | > 87 |
| Escherichia coli ECOR27 | 0.70 | NOLOHH_19870 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | NOLOHH_05145 | uvrA | excinuclease ABC subunit UvrA | low | > 75 |
| Escherichia coli ECRC98 | 0.70 | JDDGAC_04715 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | JDDGAC_16530 | uvrA | excinuclease ABC subunit UvrA | low | > 86 |
| Escherichia coli ECRC62 | 0.70 | BNILDI_18020 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | BNILDI_06380 | uvrA | excinuclease ABC subunit UvrA | low | > 75 |
| Escherichia coli ECOR38 | 0.70 | HEPCGN_26005 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | HEPCGN_11510 | uvrA | excinuclease ABC subunit UvrA | low | > 87 |
| Escherichia coli ECRC100 | 0.70 | OKFHMN_02155 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | OKFHMN_12895 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.70 | OHPLBJKB_02337 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.77 | OHPLBJKB_03983 | | UvrABC system protein A | low | > 73 |
| Escherichia coli ECRC102 | 0.70 | NIAGMN_26325 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | NIAGMN_10740 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli Nissle 1917 | 0.70 | ECOLIN_RS08065 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | ECOLIN_RS23485 | | excinuclease ABC subunit UvrA | — | — |
| Dickeya dianthicola 67-19 | 0.70 | HGI48_RS12410 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | HGI48_RS17610 | | excinuclease ABC subunit UvrA | low | > 71 |
| Alteromonas macleodii MIT1002 | 0.70 | MIT1002_02139 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.76 | MIT1002_00179 | | Excinuclease ABC subunit A | low | > 70 |
| Escherichia coli BW25113 | 0.70 | b1344 | ydaO | predicted C32 tRNA thiolase (NCBI) | 0.77 | b4058 | uvrA | excinuclease ABC subunit A (NCBI) | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.70 | ABZR86_RS16485 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.72 | ABZR86_RS00910 | | excinuclease ABC subunit UvrA | low | > 74 |
| Dickeya dadantii 3937 | 0.70 | DDA3937_RS12330 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | DDA3937_RS17605 | | excinuclease ABC subunit UvrA | low | > 74 |
| Dickeya dianthicola ME23 | 0.70 | DZA65_RS12850 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | DZA65_RS18735 | | excinuclease ABC subunit UvrA | low | > 75 |
| Pantoea sp. MT58 | 0.70 | IAI47_09475 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.76 | IAI47_17815 | | excinuclease ABC subunit UvrA | low | > 76 |
| Marinobacter adhaerens HP15 | 0.70 | HP15_2116 | | PP-loop domain protein | 0.77 | HP15_406 | | excinuclease ABC, ATPase subunit (A) | low | > 73 |
| Escherichia fergusonii Becca | 0.70 | EFB2_02583 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.77 | EFB2_04533 | | UvrABC system protein A | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.69 | GFF2648 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.77 | GFF1429 | | Excinuclease ABC subunit A | low | > 78 |
| Klebsiella michiganensis M5al | 0.69 | BWI76_RS12710 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | BWI76_RS01950 | | excinuclease ABC subunit A | low | > 92 |
| Enterobacter sp. TBS_079 | 0.69 | MPMX20_02440 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.77 | MPMX20_00276 | | UvrABC system protein A | low | > 85 |
| Enterobacter asburiae PDN3 | 0.69 | EX28DRAFT_1007 | | Predicted ATPase of the PP-loop superfamily implicated in cell cycle control | 0.76 | EX28DRAFT_4246 | | excinuclease ABC, A subunit | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS09605 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.76 | HER17_RS03550 | | excinuclease ABC subunit UvrA | low | > 75 |
| Serratia liquefaciens MT49 | 0.69 | IAI46_13420 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.76 | IAI46_22905 | | excinuclease ABC subunit UvrA | low | > 86 |
| Shewanella loihica PV-4 | 0.69 | Shew_1995 | | PP-loop domain-containing protein (RefSeq) | 0.74 | Shew_0533 | | excinuclease ABC, A subunit (RefSeq) | low | > 60 |
| Ralstonia solanacearum PSI07 | 0.68 | RPSI07_RS23130 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.70 | RPSI07_RS22065 | | excinuclease ABC subunit UvrA | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.68 | RS_RS00865 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.70 | RS_RS02080 | | excinuclease ABC subunit UvrA | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.68 | ABZR87_RS05700 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.70 | ABZR87_RS07120 | | excinuclease ABC subunit UvrA | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.68 | RALBFv3_RS10245 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.70 | RALBFv3_RS11235 | | excinuclease ABC subunit UvrA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.68 | UW163_RS03335 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.70 | UW163_RS02345 | | excinuclease ABC subunit UvrA | — | — |
| Rahnella sp. WP5 | 0.68 | EX31_RS06375 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.77 | EX31_RS11990 | | excinuclease ABC subunit UvrA | low | > 89 |
| Cupriavidus basilensis FW507-4G11 | 0.67 | RR42_RS01445 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.69 | RR42_RS02145 | | excinuclease ABC subunit A | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.66 | Ac3H11_1817 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.65 | Ac3H11_4387 | | Excinuclease ABC subunit A | low | > 79 |
| Acinetobacter radioresistens SK82 | 0.65 | MPMX26_00810 | | tRNA-cytidine(32) 2-sulfurtransferase | 0.69 | MPMX26_02892 | | UvrABC system protein A | low | > 36 |
| Rhodanobacter denitrificans FW104-10B01 | 0.65 | LRK54_RS10680 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.70 | LRK54_RS15210 | | excinuclease ABC subunit UvrA | low | > 59 |
| Variovorax sp. OAS795 | 0.65 | ABID97_RS06505 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.66 | ABID97_RS04340 | | excinuclease ABC subunit UvrA | low | > 91 |
| Variovorax sp. SCN45 | 0.65 | GFF7310 | | tRNA-(cytosine32)-2-thiocytidine synthetase TtcA | 0.66 | GFF4944 | | Excinuclease ABC subunit A | low | > 127 |
| Rhodanobacter denitrificans MT42 | 0.65 | LRK55_RS10320 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.70 | LRK55_RS14925 | | excinuclease ABC subunit UvrA | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.64 | OKGIIK_13200 | ttcA | tRNA 2-thiocytidine(32) synthetase TtcA | 0.70 | OKGIIK_03980 | uvrA | excinuclease ABC subunit UvrA | 0.46 | 29 |
| Dechlorosoma suillum PS | 0.64 | Dsui_0695 | | putative ATPase of the PP-loop superfamily implicated in cell cycle control | 0.73 | Dsui_1622 | | excinuclease ABC, A subunit | low | > 51 |
| Herbaspirillum seropedicae SmR1 | 0.64 | HSERO_RS22035 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.70 | HSERO_RS19810 | | excinuclease ABC subunit A | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.63 | GFF1658 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.66 | GFF2755 | | Excinuclease ABC subunit A | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.62 | ABCV34_RS10450 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.62 | ABCV34_RS12715 | | excinuclease ABC subunit UvrA | low | > 48 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.62 | Xcc-8004.5211.1 | | tRNA(Cytosine32)-2-thiocytidine synthetase | 0.72 | Xcc-8004.3830.1 | | Excinuclease ABC subunit A | low | > 74 |
| Rhizobium sp. OAE497 | 0.49 | ABIE40_RS10230 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.60 | ABIE40_RS09360 | | excinuclease ABC subunit UvrA | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.48 | SMc00534 | | C32 tRNA thiolase | 0.59 | SMc01235 | | excinuclease ABC subunit A | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.47 | PGA1_c02110 | | tRNA 2-thiocytidine biosynthesis protein TtcA | 0.58 | PGA1_c17370 | | uvrABC system protein A | low | > 62 |
| Agrobacterium fabrum C58 | 0.47 | Atu1858 | | hypothetical protein | 0.60 | Atu1513 | | ABC excinuclease subunit A | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.46 | Dshi_0330 | | PP-loop domain protein (RefSeq) | 0.61 | Dshi_1809 | | excinuclease ABC, A subunit (RefSeq) | low | > 64 |
| Fusobacterium nucleatum SB010 | 0.28 | HUW76_05920 | | tRNA 2-thiocytidine(32) synthetase TtcA | 0.54 | HUW76_06660 | | excinuclease ABC subunit UvrA | low | > 35 |
| Bacteroides ovatus ATCC 8483 | 0.22 | BACOVA_05345 | | PP-loop family protein | 0.51 | BACOVA_03703 | | excinuclease ABC, A subunit | low | > 94 |
| Phocaeicola dorei CL03T12C01 | 0.22 | ABI39_RS18325 | | adenine nucleotide alpha hydrolase family protein | 0.50 | ABI39_RS15330 | | excinuclease ABC subunit UvrA | low | > 72 |
| Bacteroides stercoris CC31F | 0.21 | HMPREF1181_RS13335 | | adenine nucleotide alpha hydrolase family protein | 0.49 | HMPREF1181_RS15185 | | excinuclease ABC subunit UvrA | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.21 | HMPREF1058_RS05785 | | adenine nucleotide alpha hydrolase family protein | 0.50 | HMPREF1058_RS01735 | | excinuclease ABC subunit UvrA | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.21 | BT4558 | | conserved hypothetical protein (NCBI ptt file) | 0.51 | BT0578 | | excinuclease ABC subunit A (NCBI ptt file) | low | > 81 |
| Parabacteroides merdae CL09T00C40 | 0.21 | HMPREF1078_RS13920 | | tRNA 2-thiocytidine biosynthesis TtcA family protein | 0.50 | HMPREF1078_RS00835 | | excinuclease ABC subunit UvrA | low | > 61 |
| Desulfovibrio vulgaris Miyazaki F | 0.19 | DvMF_2293 | | PP-loop domain protein (RefSeq) | 0.45 | DvMF_3050 | | excinuclease ABC, A subunit (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.18 | DVU3241 | | conserved hypothetical protein (TIGR) | 0.47 | DVU1987 | uvrA | excinuclease ABC, A subunit (TIGR) | low | > 55 |
| Methanococcus maripaludis JJ | 0.11 | MMJJ_RS07375 | | tRNA 2-thiocytidine biosynthesis TtcA family protein | 0.55 | MMJJ_RS01235 | | excinuclease ABC subunit UvrA | low | > 28 |
| Methanococcus maripaludis S2 | 0.11 | MMP_RS06980 | | tRNA 2-thiocytidine biosynthesis TtcA family protein | 0.53 | MMP_RS03815 | | excinuclease ABC subunit UvrA | low | > 25 |
Not shown: 1 genomes with orthologs for Pf1N1B4_3491 only; 22 genomes with orthologs for Pf1N1B4_2611 only