Conservation of cofitness between Pf1N1B4_3491 and Pf1N1B4_26 in Pseudomonas fluorescens FW300-N1B4

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_3491 tRNA(Cytosine32)-2-thiocytidine synthetase 1.0 Pf1N1B4_26 Excinuclease ABC subunit B 0.27 8
Pseudomonas fluorescens FW300-N2E3 0.99 AO353_02780 tRNA 2-thiocytidine biosynthesis protein TtcA 0.98 AO353_20545 excinuclease ABC subunit B 0.54 2
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_2020 tRNA(Cytosine32)-2-thiocytidine synthetase 0.97 PfGW456L13_3959 Excinuclease ABC subunit B low > 87
Pseudomonas simiae WCS417 0.97 PS417_16415 tRNA 2-thiocytidine biosynthesis protein TtcA 0.96 PS417_18685 excinuclease ABC subunit B 0.24 39
Pseudomonas syringae pv. syringae B728a ΔmexB 0.97 Psyr_3705 conserved hypothetical protein 0.95 Psyr_1974 Excinuclease ABC subunit B low > 86
Pseudomonas syringae pv. syringae B728a 0.97 Psyr_3705 conserved hypothetical protein 0.95 Psyr_1974 Excinuclease ABC subunit B low > 86
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.96 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas fluorescens SBW25 0.97 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.96 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas sp. RS175 0.96 PFR28_03236 tRNA-cytidine(32) 2-sulfurtransferase 0.97 PFR28_02837 UvrABC system protein B low > 88
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_5711 tRNA(Cytosine32)-2-thiocytidine synthetase 0.97 Pf6N2E2_52 Excinuclease ABC subunit B low > 103
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_19000 tRNA 2-thiocytidine biosynthesis protein TtcA 0.97 AO356_21335 excinuclease ABC subunit B 0.43 3
Pseudomonas putida KT2440 0.92 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA 0.91 PP_1974 excinuclease UvrABC protein B — —
Pseudomonas stutzeri RCH2 0.89 Psest_3033 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.90 Psest_1296 excinuclease ABC, B subunit low > 67
Pseudomonas sp. S08-1 0.88 OH686_05145 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA 0.88 OH686_04580 excinuclease ABC subunit B low > 80
Shewanella amazonensis SB2B 0.72 Sama_1801 hypothetical protein (RefSeq) 0.71 Sama_1828 excinuclease ABC subunit B (RefSeq) low > 62
Shewanella oneidensis MR-1 0.72 SO2354 conserved hypothetical protein (NCBI ptt file) 0.72 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) low > 76
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_2154 tRNA s(2)C-32 sulfurtransferase (EC 2.8.1.4) 0.72 B158DRAFT_2341 Excinuclease ABC subunit B low > 40
Erwinia tracheiphila SCR3 0.71 LU632_RS12165 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.72 LU632_RS09160 uvrB excinuclease ABC subunit B low > 74
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_07180 tRNA 2-thiocytidine(32) synthetase TtcA 0.73 CSW01_05185 excinuclease ABC subunit UvrB low > 62
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_02337 tRNA-cytidine(32) 2-sulfurtransferase 0.70 OHPLBJKB_02934 UvrABC system protein B low > 73
Escherichia coli ECRC101 0.70 MCAODC_16100 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.70 MCAODC_25595 uvrB excinuclease ABC subunit UvrB low > 87
Escherichia coli BL21 0.70 ECD_01321 tRNA s(2)C32 thioltransferase, iron sulfur cluster protein 0.70 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component low > 61
Escherichia coli ECRC62 0.70 BNILDI_18020 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.70 BNILDI_21020 uvrB excinuclease ABC subunit UvrB low > 75
Escherichia coli ECRC102 0.70 NIAGMN_26325 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.70 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECOR38 0.70 HEPCGN_26005 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.70 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB low > 87
Escherichia coli ECRC100 0.70 OKFHMN_02155 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.70 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC99 0.70 KEDOAH_26600 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.70 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECOR27 0.70 NOLOHH_19870 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.70 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB low > 75
Escherichia coli ECRC98 0.70 JDDGAC_04715 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.70 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB low > 86
Dickeya dianthicola ME23 0.70 DZA65_RS12850 tRNA 2-thiocytidine(32) synthetase TtcA 0.72 DZA65_RS08990 excinuclease ABC subunit B low > 75
Escherichia coli Nissle 1917 0.70 ECOLIN_RS08065 tRNA 2-thiocytidine(32) synthetase TtcA 0.70 ECOLIN_RS04150 excinuclease ABC subunit UvrB — —
Dickeya dianthicola 67-19 0.70 HGI48_RS12410 tRNA 2-thiocytidine(32) synthetase TtcA 0.71 HGI48_RS08695 excinuclease ABC subunit B low > 71
Dickeya dadantii 3937 0.70 DDA3937_RS12330 tRNA 2-thiocytidine(32) synthetase TtcA 0.71 DDA3937_RS08530 excinuclease ABC subunit B low > 74
Escherichia coli BW25113 0.70 b1344 ydaO predicted C32 tRNA thiolase (NCBI) 0.70 b0779 uvrB excinuclease ABC subunit B (NCBI) low > 76
Alteromonas macleodii MIT1002 0.70 MIT1002_02139 tRNA 2-thiocytidine biosynthesis protein TtcA 0.70 MIT1002_01261 Excinuclease ABC subunit B low > 70
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS16485 tRNA 2-thiocytidine(32) synthetase TtcA 0.70 ABZR86_RS09750 excinuclease ABC subunit UvrB low > 74
Pantoea sp. MT58 0.70 IAI47_09475 tRNA 2-thiocytidine(32) synthetase TtcA 0.71 IAI47_13505 excinuclease ABC subunit B low > 76
Marinobacter adhaerens HP15 0.70 HP15_2116 PP-loop domain protein 0.76 HP15_1372 excinuclease ABC subunit B low > 73
Escherichia fergusonii Becca 0.70 EFB2_02583 tRNA-cytidine(32) 2-sulfurtransferase 0.70 EFB2_03326 UvrABC system protein B low > 86
Klebsiella michiganensis M5al 0.69 BWI76_RS12710 tRNA 2-thiocytidine(32) synthetase TtcA 0.70 BWI76_RS08785 excinuclease ABC subunit B low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF2648 tRNA(Cytosine32)-2-thiocytidine synthetase 0.70 GFF675 Excinuclease ABC subunit B low > 78
Enterobacter asburiae PDN3 0.69 EX28DRAFT_1007 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.70 EX28DRAFT_2211 Excinuclease ABC subunit B low > 76
Pectobacterium carotovorum WPP14 0.69 HER17_RS09605 tRNA 2-thiocytidine(32) synthetase TtcA 0.73 HER17_RS13420 excinuclease ABC subunit B low > 75
Enterobacter sp. TBS_079 0.69 MPMX20_02440 tRNA-cytidine(32) 2-sulfurtransferase 0.70 MPMX20_01408 UvrABC system protein B low > 85
Serratia liquefaciens MT49 0.69 IAI46_13420 tRNA 2-thiocytidine(32) synthetase TtcA 0.74 IAI46_06550 excinuclease ABC subunit B low > 86
Shewanella loihica PV-4 0.69 Shew_1995 PP-loop domain-containing protein (RefSeq) 0.72 Shew_2064 excinuclease ABC subunit B (RefSeq) low > 60
Ralstonia solanacearum PSI07 0.68 RPSI07_RS23130 tRNA 2-thiocytidine(32) synthetase TtcA 0.68 RPSI07_RS19240 excinuclease ABC subunit UvrB low > 81
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS05700 tRNA 2-thiocytidine(32) synthetase TtcA 0.68 ABZR87_RS09940 excinuclease ABC subunit UvrB 0.38 64
Ralstonia solanacearum GMI1000 0.68 RS_RS00865 tRNA 2-thiocytidine(32) synthetase TtcA 0.67 RS_RS05005 UvrABC system protein B low > 80
Ralstonia solanacearum UW163 0.68 UW163_RS03335 tRNA 2-thiocytidine(32) synthetase TtcA 0.68 UW163_RS11690 excinuclease ABC subunit UvrB — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS10245 tRNA 2-thiocytidine(32) synthetase TtcA 0.68 RALBFv3_RS14225 excinuclease ABC subunit UvrB low > 76
Lysobacter sp. OAE881 0.68 ABIE51_RS01305 tRNA 2-thiocytidine(32) synthetase TtcA 0.70 ABIE51_RS15310 excinuclease ABC subunit UvrB low > 62
Rahnella sp. WP5 0.68 EX31_RS06375 tRNA 2-thiocytidine(32) synthetase TtcA 0.73 EX31_RS23720 excinuclease ABC subunit B low > 89
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS01445 tRNA 2-thiocytidine biosynthesis protein TtcA 0.69 RR42_RS05995 excinuclease ABC subunit B low > 128
Acidovorax sp. GW101-3H11 0.66 Ac3H11_1817 tRNA(Cytosine32)-2-thiocytidine synthetase 0.65 Ac3H11_4114 Excinuclease ABC subunit B low > 79
Acinetobacter radioresistens SK82 0.65 MPMX26_00810 tRNA-cytidine(32) 2-sulfurtransferase 0.69 MPMX26_02142 UvrABC system protein B low > 36
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS10680 tRNA 2-thiocytidine(32) synthetase TtcA 0.69 LRK54_RS14235 excinuclease ABC subunit UvrB low > 59
Rhodanobacter denitrificans MT42 0.65 LRK55_RS10320 tRNA 2-thiocytidine(32) synthetase TtcA 0.69 LRK55_RS13955 excinuclease ABC subunit UvrB low > 63
Variovorax sp. SCN45 0.65 GFF7310 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA 0.66 GFF945 Excinuclease ABC subunit B low > 127
Variovorax sp. OAS795 0.65 ABID97_RS06505 tRNA 2-thiocytidine(32) synthetase TtcA 0.66 ABID97_RS13995 excinuclease ABC subunit UvrB low > 91
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_13200 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.69 OKGIIK_03100 uvrB excinuclease ABC subunit UvrB low > 52
Dechlorosoma suillum PS 0.64 Dsui_0695 putative ATPase of the PP-loop superfamily implicated in cell cycle control 0.70 Dsui_2434 excinuclease ABC, B subunit low > 51
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS22035 tRNA 2-thiocytidine biosynthesis protein TtcA 0.66 HSERO_RS15840 excinuclease ABC subunit B low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF1658 tRNA(Cytosine32)-2-thiocytidine synthetase 0.66 GFF4962 Excinuclease ABC subunit B low > 90
Castellaniella sp019104865 MT123 0.62 ABCV34_RS10450 tRNA 2-thiocytidine(32) synthetase TtcA 0.66 ABCV34_RS05110 excinuclease ABC subunit UvrB low > 48
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.5211.1 tRNA(Cytosine32)-2-thiocytidine synthetase 0.71 Xcc-8004.2034.1 Excinuclease ABC subunit B low > 74
Phaeobacter inhibens DSM 17395 0.47 PGA1_c02110 tRNA 2-thiocytidine biosynthesis protein TtcA 0.58 PGA1_c26160 uvrABC system protein B low > 62
Dinoroseobacter shibae DFL-12 0.46 Dshi_0330 PP-loop domain protein (RefSeq) 0.59 Dshi_2192 excinuclease ABC, B subunit (RefSeq) low > 64
Fusobacterium nucleatum SB010 0.28 HUW76_05920 tRNA 2-thiocytidine(32) synthetase TtcA 0.55 HUW76_02625 excinuclease ABC subunit UvrB low > 35
Bacteroides ovatus ATCC 8483 0.22 BACOVA_05345 PP-loop family protein 0.52 BACOVA_03714 excinuclease ABC, B subunit low > 94
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS18325 adenine nucleotide alpha hydrolase family protein 0.52 ABI39_RS15300 excinuclease ABC subunit UvrB low > 72
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS13335 adenine nucleotide alpha hydrolase family protein 0.52 HMPREF1181_RS15225 excinuclease ABC subunit UvrB low > 56
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS05785 adenine nucleotide alpha hydrolase family protein 0.52 HMPREF1058_RS01765 excinuclease ABC subunit UvrB low > 67
Bacteroides thetaiotaomicron VPI-5482 0.21 BT4558 conserved hypothetical protein (NCBI ptt file) 0.52 BT0570 excinuclease ABC subunit B (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.21 HMPREF1078_RS13920 tRNA 2-thiocytidine biosynthesis TtcA family protein 0.56 HMPREF1078_RS15855 excinuclease ABC subunit UvrB low > 61
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_2293 PP-loop domain protein (RefSeq) 0.58 DvMF_0454 excinuclease ABC subunit B (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.18 DVU3241 conserved hypothetical protein (TIGR) 0.59 DVU1605 uvrB excinuclease ABC, B subunit (TIGR) low > 55
Methanococcus maripaludis JJ 0.11 MMJJ_RS07375 tRNA 2-thiocytidine biosynthesis TtcA family protein 0.52 MMJJ_RS01245 excinuclease ABC subunit UvrB low > 28
Methanococcus maripaludis S2 0.11 MMP_RS06980 tRNA 2-thiocytidine biosynthesis TtcA family protein 0.50 MMP_RS03805 excinuclease ABC subunit UvrB low > 25

Not shown: 3 genomes with orthologs for Pf1N1B4_3491 only; 20 genomes with orthologs for Pf1N1B4_26 only