| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4787 | | putative protein with nucleoside triphosphate hydrolase domain | 1.0 | PP_4710 | | tRNA pseudouridine 55 synthase | 0.44 | 1 |
| Pseudomonas sp. RS175 | 0.89 | PFR28_03849 | | PhoH-like protein | 0.89 | PFR28_00092 | | tRNA pseudouridine synthase B | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.88 | AO356_15405 | | ATP-binding protein | 0.88 | AO356_07400 | | pseudouridine synthase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.88 | Pf6N2E2_5017 | | Phosphate starvation-inducible protein PhoH, predicted ATPase | 0.88 | Pf6N2E2_3351 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.88 | PFLU_RS26560 | | PhoH family protein | 0.90 | PFLU_RS25800 | | tRNA pseudouridine(55) synthase TruB | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.88 | PFLU_RS26560 | | PhoH family protein | 0.90 | PFLU_RS25800 | | tRNA pseudouridine(55) synthase TruB | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.87 | Pf1N1B4_2711 | | Phosphate starvation-inducible protein PhoH, predicted ATPase | 0.89 | Pf1N1B4_1159 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.87 | PS417_24630 | | ATP-binding protein | 0.91 | PS417_23960 | | pseudouridine synthase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_1379 | | Phosphate starvation-inducible protein PhoH, predicted ATPase | 0.88 | PfGW456L13_5086 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_06380 | | ATP-binding protein | 0.88 | AO353_05550 | | pseudouridine synthase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.86 | Psyr_4346 | | PhoH-like protein | 0.89 | Psyr_4178 | | tRNA pseudouridine synthase B | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.86 | Psyr_4346 | | PhoH-like protein | 0.89 | Psyr_4178 | | tRNA pseudouridine synthase B | low | > 86 |
| Pseudomonas sp. S08-1 | 0.84 | OH686_09220 | | Phosphate starvation-inducible protein PhoH, predicted ATPase | 0.84 | OH686_17155 | | tRNA pseudouridine(55) synthase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_0531 | | Phosphate starvation-inducible protein PhoH, predicted ATPase | 0.82 | Psest_0983 | | tRNA pseudouridine 55 synthase | — | — |
| Marinobacter adhaerens HP15 | 0.64 | HP15_2467 | | PhoH family protein | 0.44 | HP15_3065 | | tRNA pseudouridine synthase B | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.62 | B158DRAFT_0098 | | Phosphate starvation-inducible protein PhoH, predicted ATPase | 0.51 | B158DRAFT_0108 | | tRNA pseudouridine 55 synthase | low | > 40 |
| Dyella japonica UNC79MFTsu3.2 | 0.61 | ABZR86_RS09920 | | PhoH family protein | 0.33 | ABZR86_RS06015 | | tRNA pseudouridine(55) synthase TruB | low | > 74 |
| Lysobacter sp. OAE881 | 0.61 | ABIE51_RS15500 | | PhoH family protein | 0.41 | ABIE51_RS08405 | | tRNA pseudouridine(55) synthase TruB | 0.45 | 7 |
| Rhodanobacter denitrificans MT42 | 0.61 | LRK55_RS13460 | | PhoH family protein | 0.40 | LRK55_RS00810 | | tRNA pseudouridine(55) synthase TruB | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.61 | LRK54_RS13720 | | PhoH family protein | 0.40 | LRK54_RS01035 | | tRNA pseudouridine(55) synthase TruB | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.60 | OKGIIK_02965 | phoH | Phosphate starvation-inducible protein PhoH, putative ATPase | 0.38 | OKGIIK_05860 | truB | tRNA pseudouridine(55) synthase TruB | low | > 52 |
| Erwinia tracheiphila SCR3 | 0.59 | LU632_RS16310 | | PhoH family protein | 0.46 | LU632_RS21050 | truB | tRNA pseudouridine(55) synthase TruB | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.59 | Xcc-8004.2223.1 | | Phosphate starvation-inducible protein PhoH, predicted ATPase | 0.40 | Xcc-8004.2004.1 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.59 | CSW01_04910 | | PhoH family protein | 0.47 | CSW01_03400 | | tRNA pseudouridine(55) synthase TruB | low | > 62 |
| Acinetobacter radioresistens SK82 | 0.58 | MPMX26_02668 | | PhoH-like protein | 0.42 | MPMX26_02778 | | tRNA pseudouridine synthase B | low | > 36 |
| Shewanella amazonensis SB2B | 0.58 | Sama_2576 | | PhoH family protein (RefSeq) | 0.44 | Sama_0963 | | pseudouridylate synthase (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.57 | MIT1002_01479 | | PhoH-like protein | 0.40 | MIT1002_01773 | | tRNA pseudouridine synthase B | — | — |
| Escherichia coli ECRC102 | 0.57 | NIAGMN_05285 | ybeZ | PhoH-like protein | 0.49 | NIAGMN_15885 | truB | tRNA pseudouridine(55) synthase TruB | — | — |
| Escherichia coli ECOR27 | 0.57 | NOLOHH_23610 | ybeZ | PhoH-like protein | 0.49 | NOLOHH_09925 | truB | tRNA pseudouridine(55) synthase TruB | low | > 57 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.57 | OHPLBJKB_03052 | | PhoH-like protein | 0.49 | OHPLBJKB_00534 | | tRNA pseudouridine synthase B | low | > 73 |
| Escherichia coli ECRC101 | 0.57 | OKFHMN_07230 | ybeZ | PhoH-like protein | 0.49 | OKFHMN_18125 | truB | tRNA pseudouridine(55) synthase TruB | — | — |
| Escherichia fergusonii Becca | 0.57 | EFB2_03439 | | PhoH-like protein | 0.49 | EFB2_00657 | | tRNA pseudouridine synthase B | low | > 86 |
| Escherichia coli Nissle 1917 | 0.57 | ECOLIN_RS03550 | | PhoH family protein | 0.49 | ECOLIN_RS18185 | | tRNA pseudouridine(55) synthase TruB | low | > 52 |
| Escherichia coli ECOR38 | 0.57 | HEPCGN_01000 | ybeZ | PhoH-like protein | 0.49 | HEPCGN_17000 | truB | tRNA pseudouridine(55) synthase TruB | 0.87 | 14 |
| Escherichia coli ECRC98 | 0.57 | JDDGAC_10875 | ybeZ | PhoH-like protein | 0.49 | JDDGAC_21750 | truB | tRNA pseudouridine(55) synthase TruB | — | — |
| Escherichia coli BW25113 | 0.57 | b0660 | ybeZ | predicted protein with nucleoside triphosphate hydrolase domain (RefSeq) | 0.49 | b3166 | truB | tRNA pseudouridine synthase B (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.57 | ECD_00628 | | heat shock protein, putative NTPase; PhoH-like protein | 0.49 | ECD_03033 | | tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase | low | > 60 |
| Escherichia coli ECRC62 | 0.57 | BNILDI_21615 | ybeZ | PhoH-like protein | 0.49 | BNILDI_01610 | truB | tRNA pseudouridine(55) synthase TruB | — | — |
| Escherichia coli ECRC101 | 0.57 | MCAODC_26445 | ybeZ | PhoH-like protein | 0.49 | MCAODC_08645 | truB | tRNA pseudouridine(55) synthase TruB | — | — |
| Escherichia coli ECRC99 | 0.57 | KEDOAH_20740 | ybeZ | PhoH-like protein | 0.49 | KEDOAH_10025 | truB | tRNA pseudouridine(55) synthase TruB | — | — |
| Shewanella sp. ANA-3 | 0.57 | Shewana3_1007 | | PhoH family protein (RefSeq) | 0.46 | Shewana3_1032 | | tRNA pseudouridine synthase B (RefSeq) | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.57 | GFF4577 | | Phosphate starvation-inducible protein PhoH, predicted ATPase | 0.49 | GFF1500 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.59 | 74 |
| Pectobacterium carotovorum WPP14 | 0.57 | HER17_RS15170 | | PhoH family protein | 0.48 | HER17_RS18200 | | tRNA pseudouridine(55) synthase TruB | low | > 75 |
| Enterobacter sp. TBS_079 | 0.57 | MPMX20_01310 | | PhoH-like protein | 0.48 | MPMX20_04071 | | tRNA pseudouridine synthase B | low | > 85 |
| Dickeya dianthicola ME23 | 0.56 | DZA65_RS06635 | | PhoH family protein | 0.48 | DZA65_RS03245 | | tRNA pseudouridine(55) synthase TruB | low | > 75 |
| Dickeya dadantii 3937 | 0.56 | DDA3937_RS06245 | | PhoH family protein | 0.49 | DDA3937_RS03080 | | tRNA pseudouridine(55) synthase TruB | low | > 74 |
| Dickeya dianthicola 67-19 | 0.56 | HGI48_RS06290 | | PhoH family protein | 0.49 | HGI48_RS03250 | | tRNA pseudouridine(55) synthase TruB | low | > 71 |
| Pantoea sp. MT58 | 0.56 | IAI47_13950 | | PhoH family protein | 0.48 | IAI47_17015 | | tRNA pseudouridine(55) synthase TruB | low | > 76 |
| Enterobacter asburiae PDN3 | 0.56 | EX28DRAFT_2311 | | Phosphate starvation-inducible protein PhoH, predicted ATPase | 0.48 | EX28DRAFT_3217 | | tRNA pseudouridine(55) synthase | low | > 76 |
| Klebsiella michiganensis M5al | 0.56 | BWI76_RS08130 | | nucleoside triphosphate hydrolase | 0.48 | BWI76_RS25080 | | tRNA pseudouridine(55) synthase | — | — |
| Shewanella loihica PV-4 | 0.56 | Shew_2924 | | PhoH family protein (RefSeq) | 0.43 | Shew_2825 | | tRNA pseudouridine synthase B (RefSeq) | — | — |
| Serratia liquefaciens MT49 | 0.56 | IAI46_06015 | | PhoH family protein | 0.50 | IAI46_01945 | | tRNA pseudouridine(55) synthase TruB | low | > 86 |
| Rahnella sp. WP5 | 0.55 | EX31_RS23195 | | PhoH family protein | 0.47 | EX31_RS08530 | | tRNA pseudouridine(55) synthase TruB | 0.40 | 49 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS02640 | | PhoH family protein | 0.43 | RS_RS06470 | | tRNA pseudouridine(55) synthase TruB | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.52 | BPHYT_RS16540 | | phosphate starvation protein PhoH | 0.48 | BPHYT_RS08080 | | tRNA pseudouridine synthase B | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.52 | H281DRAFT_04240 | | phosphate starvation-inducible protein PhoH | 0.46 | H281DRAFT_05106 | | tRNA pseudouridine synthase B | low | > 103 |
| Ralstonia solanacearum UW163 | 0.52 | UW163_RS01765 | | PhoH family protein | 0.43 | UW163_RS13150 | | tRNA pseudouridine(55) synthase TruB | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.52 | RALBFv3_RS11820 | | PhoH family protein | 0.43 | RALBFv3_RS15690 | | tRNA pseudouridine(55) synthase TruB | 0.38 | 12 |
| Ralstonia sp. UNC404CL21Col | 0.52 | ABZR87_RS07775 | | PhoH family protein | 0.43 | ABZR87_RS11220 | | tRNA pseudouridine(55) synthase TruB | 0.53 | 25 |
| Paraburkholderia graminis OAS925 | 0.52 | ABIE53_003480 | | phosphate starvation-inducible PhoH-like protein | 0.46 | ABIE53_001832 | | tRNA pseudouridine55 synthase | low | > 113 |
| Herbaspirillum seropedicae SmR1 | 0.52 | HSERO_RS03610 | | phosphate starvation protein PhoH | 0.47 | HSERO_RS17985 | | tRNA pseudouridine synthase B | low | > 78 |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS21385 | | PhoH family protein | 0.43 | RPSI07_RS17665 | | tRNA pseudouridine(55) synthase TruB | low | > 81 |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_4682 | | Phosphate starvation-inducible protein PhoH, predicted ATPase | 0.39 | Ac3H11_2865 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | low | > 79 |
| Paraburkholderia sabiae LMG 24235 | 0.51 | QEN71_RS02190 | | PhoH family protein | 0.47 | QEN71_RS23090 | | tRNA pseudouridine(55) synthase TruB | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.51 | RR42_RS02850 | | phoH-like protein | 0.44 | RR42_RS12835 | | tRNA pseudouridine synthase B | low | > 128 |
| Variovorax sp. OAS795 | 0.51 | ABID97_RS24925 | | PhoH family protein | 0.42 | ABID97_RS16475 | | tRNA pseudouridine(55) synthase TruB | low | > 91 |
| Dechlorosoma suillum PS | 0.50 | Dsui_1195 | | phosphate starvation-inducible protein PhoH, predicted ATPase | 0.48 | Dsui_2720 | | tRNA pseudouridine 55 synthase | low | > 51 |
| Variovorax sp. SCN45 | 0.50 | GFF2072 | | Phosphate starvation-inducible protein PhoH, predicted ATPase | 0.40 | GFF220 | | tRNA pseudouridine(55) synthase (EC 5.4.99.25) | low | > 127 |
| Dinoroseobacter shibae DFL-12 | 0.45 | Dshi_1016 | | PhoH family protein (RefSeq) | 0.34 | Dshi_3042 | | tRNA pseudouridine synthase B (RefSeq) | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.44 | SMc01114 | | phoH-like protein | 0.33 | SMc00321 | | tRNA pseudouridine synthase B | low | > 103 |
| Rhizobium sp. OAE497 | 0.44 | ABIE40_RS01700 | | PhoH family protein | 0.32 | ABIE40_RS00345 | | tRNA pseudouridine(55) synthase TruB | low | > 107 |
| Phaeobacter inhibens DSM 17395 | 0.43 | PGA1_c04740 | | phoH-like protein | 0.33 | PGA1_c32950 | | tRNA pseudouridine synthase B | 0.20 | 48 |
| Agrobacterium fabrum C58 | 0.43 | Atu0357 | | phosphate starvation inducible protein | 0.34 | Atu0085 | | tRNA pseudouridine 55 synthase | low | > 89 |
| Azospirillum sp. SherDot2 | 0.42 | MPMX19_02512 | | PhoH-like protein | 0.35 | MPMX19_02524 | | tRNA pseudouridine synthase B | low | > 112 |
| Synechococcus elongatus PCC 7942 | 0.42 | Synpcc7942_1775 | | phosphate starvation-induced protein | 0.27 | Synpcc7942_1222 | truB | tRNA pseudouridine synthase B | low | > 38 |
| Magnetospirillum magneticum AMB-1 | 0.40 | AMB_RS22590 | | PhoH family protein | 0.29 | AMB_RS20810 | | tRNA pseudouridine(55) synthase TruB | low | > 64 |
| Rhodospirillum rubrum S1H | 0.40 | Rru_A3771 | | PhoH-like protein (NCBI) | 0.29 | Rru_A3783 | | tRNA pseudouridine synthase B (NCBI) | low | > 58 |
| Rhodopseudomonas palustris CGA009 | 0.39 | TX73_002320 | | PhoH family protein | 0.32 | TX73_002255 | | tRNA pseudouridine(55) synthase TruB | low | > 86 |
| Bosea sp. OAE506 | 0.39 | ABIE41_RS04500 | | PhoH family protein | 0.33 | ABIE41_RS04565 | | tRNA pseudouridine(55) synthase TruB | low | > 77 |
| Caulobacter crescentus NA1000 | 0.36 | CCNA_00053 | | phosphate starvation-inducible protein PhoH | 0.32 | CCNA_00035 | | tRNA pseudouridine synthase B | 0.70 | 31 |
| Caulobacter crescentus NA1000 Δfur | 0.36 | CCNA_00053 | | phosphate starvation-inducible protein PhoH | 0.32 | CCNA_00035 | | tRNA pseudouridine synthase B | 0.83 | 17 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.35 | A4249_RS14715 | | PhoH family protein | 0.28 | A4249_RS13345 | | tRNA pseudouridine(55) synthase TruB | low | > 48 |
Not shown: 18 genomes with orthologs for PP_4787 only; 1 genomes with orthologs for PP_4710 only