Conservation of cofitness between PP_5114 and PP_2148 in Pseudomonas putida KT2440

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5114 putative adenine methyltransferase 1.0 PP_2148 transcription-repair coupling factor 0.67 1
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas stutzeri RCH2 0.66 Psest_0255 RNA methyltransferase, RsmD family 0.85 Psest_1653 transcription-repair coupling factor (mfd) — —
Pseudomonas sp. S08-1 0.65 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.84 OH686_21990 transcription-repair coupling factor low > 80
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25 0.63 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.89 Pf6N2E2_2278 Transcription-repair coupling factor low > 103
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.87 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.89 AO356_02270 transcription-repair coupling factor low > 104
Pseudomonas sp. RS175 0.62 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.89 PFR28_01123 Transcription-repair-coupling factor low > 88
Pseudomonas simiae WCS417 0.62 PS417_26825 16S rRNA methyltransferase 0.87 PS417_07635 transcription-repair coupling factor — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.89 AO353_00435 transcription-repair coupling factor low > 101
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.87 Pf1N1B4_3916 Transcription-repair coupling factor — —
Pectobacterium carotovorum WPP14 0.48 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 HER17_RS08775 transcription-repair coupling factor low > 75
Rahnella sp. WP5 0.48 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 EX31_RS24520 transcription-repair coupling factor low > 89
Serratia liquefaciens MT49 0.47 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.56 IAI46_10320 transcription-repair coupling factor low > 86
Dickeya dianthicola 67-19 0.46 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 HGI48_RS13065 transcription-repair coupling factor low > 71
Dickeya dadantii 3937 0.46 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 DDA3937_RS13000 transcription-repair coupling factor low > 74
Dickeya dianthicola ME23 0.46 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 DZA65_RS13530 transcription-repair coupling factor low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.55 OHPLBJKB_02552 Transcription-repair-coupling factor 0.72 71
Marinobacter adhaerens HP15 0.44 HP15_3491 conserved hypothetical protein 0.62 HP15_2257 transcription-repair-coupling factor low > 73
Escherichia fergusonii Becca 0.43 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.55 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECOR38 0.43 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 HEPCGN_24015 mfd transcription-repair coupling factor low > 85
Escherichia coli BW25113 0.43 b3465 yhhF predicted methyltransferase (NCBI) 0.55 b1114 mfd transcription-repair coupling factor (NCBI) 0.27 19
Escherichia coli ECOR27 0.43 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 NOLOHH_20995 mfd transcription-repair coupling factor low > 57
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.56 CSW01_09445 transcription-repair coupling factor low > 62
Escherichia coli ECRC62 0.43 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 BNILDI_19160 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.43 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 OKFHMN_03470 mfd transcription-repair coupling factor — —
Escherichia coli ECRC99 0.43 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.43 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 MCAODC_22830 mfd transcription-repair coupling factor — —
Shewanella sp. ANA-3 0.43 Shewana3_3973 putative methyltransferase (RefSeq) 0.55 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Escherichia coli ECRC98 0.43 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 JDDGAC_07130 mfd transcription-repair coupling factor — —
Escherichia coli ECRC102 0.43 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 NIAGMN_24360 mfd transcription-repair coupling factor — —
Shewanella oneidensis MR-1 0.43 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.55 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Escherichia coli BL21 0.43 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.55 ECD_01110 transcription-repair coupling factor 0.62 41
Shewanella loihica PV-4 0.42 Shew_3607 putative methyltransferase (RefSeq) 0.55 Shew_1630 transcription-repair coupling factor (RefSeq) low > 60
Pantoea sp. MT58 0.42 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 IAI47_11975 transcription-repair coupling factor low > 76
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.54 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Erwinia tracheiphila SCR3 0.41 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.54 LU632_RS14730 mfd transcription-repair coupling factor low > 74
Klebsiella michiganensis M5al 0.40 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.55 BWI76_RS11205 transcription-repair coupling factor low > 92
Rhodanobacter denitrificans MT42 0.39 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.55 LRK55_RS01815 transcription-repair coupling factor low > 63
Shewanella amazonensis SB2B 0.39 Sama_3469 hypothetical protein (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.55 LRK54_RS02040 transcription-repair coupling factor low > 59
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.55 GFF3397 Transcription-repair coupling factor low > 78
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.56 ABZR86_RS21210 transcription-repair coupling factor low > 74
Enterobacter asburiae PDN3 0.39 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.54 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Enterobacter sp. TBS_079 0.38 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.54 MPMX20_01795 Transcription-repair-coupling factor low > 85
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) 0.54 B158DRAFT_1800 transcription-repair coupling factor low > 40
Dechlorosoma suillum PS 0.35 Dsui_1027 RNA methyltransferase, RsmD family 0.48 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Acinetobacter radioresistens SK82 0.35 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D 0.52 MPMX26_01319 Transcription-repair-coupling factor low > 36
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS02815 methyltransferase 0.49 BPHYT_RS09290 helicase low > 109
Lysobacter sp. OAE881 0.35 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.54 ABIE51_RS14320 transcription-repair coupling factor low > 62
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.49 QEN71_RS22060 transcription-repair coupling factor low > 153
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.49 H281DRAFT_00880 transcription-repair coupling factor low > 103
Castellaniella sp019104865 MT123 0.33 ABCV34_RS10145 RsmD family RNA methyltransferase 0.47 ABCV34_RS08660 transcription-repair coupling factor low > 48
Paraburkholderia graminis OAS925 0.32 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase 0.50 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS20695 methyltransferase 0.49 HSERO_RS15180 transcription-repair coupling factor low > 78
Acidovorax sp. GW101-3H11 0.29 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.48 Ac3H11_328 Transcription-repair coupling factor — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS01990 methyltransferase 0.48 RR42_RS07845 transcription-repair coupling factor low > 128
Phaeobacter inhibens DSM 17395 0.28 PGA1_c29260 ribosomal RNA small subunit methyltransferase D 0.33 PGA1_c14920 transcription-repair-coupling factor Mfd low > 62
Ralstonia solanacearum PSI07 0.27 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.48 RPSI07_RS16040 transcription-repair coupling factor low > 81
Ralstonia solanacearum IBSBF1503 0.27 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.49 RALBFv3_RS01445 transcription-repair coupling factor low > 76
Ralstonia solanacearum UW163 0.27 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.49 UW163_RS14755 transcription-repair coupling factor — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.49 GFF4934 Transcription-repair coupling factor low > 90
Ralstonia solanacearum GMI1000 0.26 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.49 RS_RS08275 transcription-repair coupling factor low > 80
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.50 ABZR87_RS13240 transcription-repair coupling factor low > 80
Desulfovibrio vulgaris Hildenborough JW710 0.25 DVU1531 methyltransferase, putative (TIGR) 0.27 DVU1903 mfd transcription-repair coupling factor (TIGR) low > 55
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS04215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.34 A4249_RS04775 transcription-repair coupling factor low > 48
Bosea sp. OAE506 0.23 ABIE41_RS23215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.33 ABIE41_RS15825 transcription-repair coupling factor low > 77
Rhodospirillum rubrum S1H 0.22 Rru_A0653 hypothetical protein (NCBI) 0.33 Rru_A1726 Transcription-repair coupling factor (NCBI) — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_0115 putative methyltransferase (RefSeq) 0.33 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Azospirillum sp. SherDot2 0.22 MPMX19_01626 Ribosomal RNA small subunit methyltransferase D 0.33 MPMX19_00876 Transcription-repair-coupling factor — —
Rhodopseudomonas palustris CGA009 0.22 TX73_005985 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.33 TX73_013805 transcription-repair coupling factor low > 86
Magnetospirillum magneticum AMB-1 0.22 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.33 AMB_RS12390 transcription-repair coupling factor low > 64
Rhizobium sp. OAE497 0.22 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.32 ABIE40_RS09310 transcription-repair coupling factor low > 107
Agrobacterium fabrum C58 0.21 Atu0690 hypothetical protein 0.33 Atu1778 transcription-repair coupling factor low > 89
Bifidobacterium breve UCC2003 0.21 BBR_RS19290 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.27 BBR_RS14115 transcription-repair coupling factor low > 34
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_1480 hypothetical protein 0.28 Synpcc7942_1326 mfd transcription-repair coupling factor low > 38

Not shown: 7 genomes with orthologs for PP_5114 only; 9 genomes with orthologs for PP_2148 only