Conservation of cofitness between PP_5227 and PP_1079 in Pseudomonas putida KT2440

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5227 diaminopimelate decarboxylase 1.0 PP_1079 Ornithine carbamoyltransferase 0.50 3
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_12740 diaminopimelate decarboxylase 0.86 AO356_18275 ornithine carbamoyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.85 Pf6N2E2_5579 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Pseudomonas sp. RS175 0.89 PFR28_04375 Diaminopimelate decarboxylase 0.86 PFR28_03363 Ornithine carbamoyltransferase 1, anabolic — —
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.86 PfGW456L13_1739 Ornithine carbamoyltransferase (EC 2.1.3.3) 0.89 17
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.86 Pf1N1B4_762 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_0182 diaminopimelate decarboxylase 0.82 Psyr_3901 ornithine carbamoyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_0182 diaminopimelate decarboxylase 0.82 Psyr_3901 ornithine carbamoyltransferase — —
Pseudomonas simiae WCS417 0.87 PS417_27580 diaminopimelate decarboxylase 0.86 PS417_05595 ornithine carbamoyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS29265 diaminopimelate decarboxylase 0.84 PFLU_RS05680 ornithine carbamoyltransferase — —
Pseudomonas fluorescens SBW25 0.86 PFLU_RS29265 diaminopimelate decarboxylase 0.84 PFLU_RS05680 ornithine carbamoyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_09035 diaminopimelate decarboxylase 0.86 AO353_04155 ornithine carbamoyltransferase — —
Pseudomonas stutzeri RCH2 0.82 Psest_3764 diaminopimelate decarboxylase 0.82 Psest_1291 ornithine carbamoyltransferase — —
Pseudomonas sp. S08-1 0.81 OH686_13800 diaminopimelate decarboxylase 0.79 OH686_20405 ornithine carbamoyltransferase low > 80
Marinobacter adhaerens HP15 0.72 HP15_247 diaminopimelate decarboxylase 0.66 HP15_750 ornithine carbamoyltransferase — —
Shewanella loihica PV-4 0.66 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.31 Shew_0204 ornithine carbamoyltransferase (RefSeq) 0.97 19
Shewanella oneidensis MR-1 0.65 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.31 SO0277 argF ornithine carbamoyltransferase (NCBI ptt file) 0.95 33
Dechlorosoma suillum PS 0.64 Dsui_1182 diaminopimelate decarboxylase 0.52 Dsui_3249 ornithine carbamoyltransferase — —
Acinetobacter radioresistens SK82 0.61 MPMX26_02232 Diaminopimelate decarboxylase 0.62 MPMX26_01287 Ornithine carbamoyltransferase 1, anabolic 0.88 4
Paraburkholderia sabiae LMG 24235 0.61 QEN71_RS28080 diaminopimelate decarboxylase 0.51 QEN71_RS02785 ornithine carbamoyltransferase 0.96 1
Ralstonia solanacearum UW163 0.59 UW163_RS06625 diaminopimelate decarboxylase 0.50 UW163_RS08440 ornithine carbamoyltransferase — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS06990 diaminopimelate decarboxylase 0.50 RALBFv3_RS05185 ornithine carbamoyltransferase — —
Ralstonia solanacearum GMI1000 0.59 RS_RS14930 diaminopimelate decarboxylase 0.50 RS_RS12805 ornithine carbamoyltransferase — —
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS17930 diaminopimelate decarboxylase 0.51 BPHYT_RS15915 ornithine carbamoyltransferase low > 109
Paraburkholderia graminis OAS925 0.59 ABIE53_003749 diaminopimelate decarboxylase 0.52 ABIE53_003354 ornithine carbamoyltransferase — —
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS02640 diaminopimelate decarboxylase 0.51 ABZR87_RS00840 ornithine carbamoyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_05606 diaminopimelate decarboxylase 0.52 H281DRAFT_04119 ornithine carbamoyltransferase — —
Ralstonia solanacearum PSI07 0.59 RPSI07_RS10250 diaminopimelate decarboxylase 0.50 RPSI07_RS12115 ornithine carbamoyltransferase — —
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS00950 diaminopimelate decarboxylase 0.51 HSERO_RS07185 Ornithine carbamoyltransferase (EC 2.1.3.3) (from data) — —
Castellaniella sp019104865 MT123 0.57 ABCV34_RS12685 diaminopimelate decarboxylase 0.51 ABCV34_RS05380 ornithine carbamoyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.55 DvMF_0353 diaminopimelate decarboxylase (RefSeq) 0.45 DvMF_0046 ornithine carbamoyltransferase (RefSeq) low > 51
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS19050 diaminopimelate decarboxylase 0.50 RR42_RS17175 ornithine carbamoyltransferase — —
Variovorax sp. SCN45 0.53 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.53 GFF3926 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.50 GFF3419 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Desulfovibrio vulgaris Hildenborough JW710 0.52 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) 0.45 DVU1096 argF ornithine carbamoyltransferase (TIGR) low > 55
Variovorax sp. OAS795 0.51 ABID97_RS23305 diaminopimelate decarboxylase 0.55 ABID97_RS08630 ornithine carbamoyltransferase — —
Azospirillum sp. SherDot2 0.49 MPMX19_05819 Diaminopimelate decarboxylase 0.45 MPMX19_02178 Ornithine carbamoyltransferase, anabolic — —
Azospirillum brasilense Sp245 0.49 AZOBR_RS16945 diaminopimelate decarboxylase 0.45 AZOBR_RS19030 ornithine carbamoyltransferase — —
Agrobacterium fabrum C58 0.47 Atu3601 diaminopimelate decarboxylase 0.47 Atu0429 ornithine carbamoyltransferase — —
Rhodopseudomonas palustris CGA009 0.47 TX73_024635 diaminopimelate decarboxylase 0.46 TX73_024805 ornithine carbamoyltransferase — —
Sinorhizobium meliloti 1021 0.46 SMc00723 diaminopimelate DAP decarboxylase 0.48 SMc02137 ornithine carbamoyltransferase — —
Phaeobacter inhibens DSM 17395 0.46 PGA1_c03470 diaminopimelate decarboxylase LysA 0.44 PGA1_c24220 ornithine carbamoyltransferase ArgF — —
Dinoroseobacter shibae DFL-12 0.46 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.44 Dshi_0796 ornithine carbamoyltransferase (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.46 AMB_RS22725 diaminopimelate decarboxylase 0.47 AMB_RS01610 ornithine carbamoyltransferase — —
Rhizobium sp. OAE497 0.45 ABIE40_RS17530 diaminopimelate decarboxylase 0.46 ABIE40_RS02325 ornithine carbamoyltransferase 0.97 10
Rhodospirillum rubrum S1H 0.43 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.50 Rru_A3276 Ornithine carbamoyltransferase (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_02296 diaminopimelate decarboxylase 0.46 CCNA_02325 ornithine carbamoyltransferase — —
Caulobacter crescentus NA1000 0.42 CCNA_02296 diaminopimelate decarboxylase 0.46 CCNA_02325 ornithine carbamoyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS12545 diaminopimelate decarboxylase 0.51 A4249_RS11920 ornithine carbamoyltransferase 0.99 10
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS11485 diaminopimelate decarboxylase 0.20 LRK54_RS02415 N-acetylornithine carbamoyltransferase low > 59
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS12130 diaminopimelate decarboxylase 0.19 ABZR86_RS08730 N-acetylornithine carbamoyltransferase low > 74
Rhodanobacter denitrificans MT42 0.40 LRK55_RS11215 diaminopimelate decarboxylase 0.20 LRK55_RS02170 N-acetylornithine carbamoyltransferase low > 63
Bosea sp. OAE506 0.40 ABIE41_RS08740 diaminopimelate decarboxylase 0.41 ABIE41_RS04335 ornithine carbamoyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.45 Ga0059261_3206 ornithine carbamoyltransferase 0.99 13
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.19 OKGIIK_09480 argF N-acetylornithine carbamoyltransferase low > 52
Methanococcus maripaludis JJ 0.36 MMJJ_RS08170 diaminopimelate decarboxylase 0.33 MMJJ_RS02150 ornithine carbamoyltransferase — —
Methanococcus maripaludis S2 0.36 MMP_RS06180 diaminopimelate decarboxylase 0.33 MMP_RS02925 ornithine carbamoyltransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_02390 diaminopimelate decarboxylase 0.16 CA264_06240 acetylornithine carbamoyltransferase low > 74
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.15 HMPREF1078_RS10660 acetylornithine carbamoyltransferase 0.98 2
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS09650 diaminopimelate decarboxylase 0.13 CA265_RS18520 acetylornithine carbamoyltransferase 0.87 27
Mucilaginibacter yixingensis YX-36 DSM 26809 0.30 ABZR88_RS10180 diaminopimelate decarboxylase 0.14 ABZR88_RS15495 acetylornithine carbamoyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.17 Echvi_3849 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) 0.88 27
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_0262 lysA diaminopimelate decarboxylase 0.44 Synpcc7942_2514 argF ornithine carbamoyltransferase — —
Mycobacterium tuberculosis H37Rv 0.21 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) 0.38 Rv1656 Probable ornithine carbamoyltransferase, anabolic ArgF — —

Not shown: 14 genomes with orthologs for PP_5227 only; 3 genomes with orthologs for PP_1079 only