Conservation of cofitness between PP_5114 and PP_0434 in Pseudomonas putida KT2440

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5114 putative adenine methyltransferase 1.0 PP_0434 Anhydro-N-acetylmuramic acid kinase 0.55 14
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.69 Psyr_4567 Protein of unknown function UPF0075 0.37 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.69 Psyr_4567 Protein of unknown function UPF0075 low > 86
Pseudomonas stutzeri RCH2 0.66 Psest_0255 RNA methyltransferase, RsmD family 0.68 Psest_3637 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases — —
Pseudomonas sp. S08-1 0.65 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.71 OH686_15205 Anhydro-N-acetylmuramic acid kinase low > 80
Pseudomonas fluorescens SBW25 0.63 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.75 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase low > 109
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.75 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase low > 109
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.74 Pf6N2E2_4838 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 103
Pseudomonas sp. RS175 0.62 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.74 PFR28_04031 Anhydro-N-acetylmuramic acid kinase low > 88
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.76 PfGW456L13_1235 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.75 AO356_14500 anhydro-N-acetylmuramic acid kinase 0.31 67
Pseudomonas simiae WCS417 0.62 PS417_26825 16S rRNA methyltransferase 0.74 PS417_25650 anhydro-N-acetylmuramic acid kinase — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.76 AO353_07145 anhydro-N-acetylmuramic acid kinase low > 101
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.76 Pf1N1B4_2562 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) — —
Pectobacterium carotovorum WPP14 0.48 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 HER17_RS09280 anhydro-N-acetylmuramic acid kinase low > 75
Rahnella sp. WP5 0.48 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 EX31_RS13765 anhydro-N-acetylmuramic acid kinase low > 89
Serratia liquefaciens MT49 0.47 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.46 IAI46_11350 anhydro-N-acetylmuramic acid kinase low > 86
Dickeya dianthicola 67-19 0.46 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 HGI48_RS12640 anhydro-N-acetylmuramic acid kinase low > 71
Dickeya dadantii 3937 0.46 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 DDA3937_RS12585 anhydro-N-acetylmuramic acid kinase low > 74
Dickeya dianthicola ME23 0.46 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 DZA65_RS13095 anhydro-N-acetylmuramic acid kinase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.42 OHPLBJKB_02085 Anhydro-N-acetylmuramic acid kinase low > 73
Marinobacter adhaerens HP15 0.44 HP15_3491 conserved hypothetical protein 0.41 HP15_356 anhydro-N-acetylmuramic acid kinase low > 73
Escherichia fergusonii Becca 0.43 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.42 EFB2_02352 Anhydro-N-acetylmuramic acid kinase low > 86
Escherichia coli ECOR38 0.43 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.42 HEPCGN_05870 anmK anhydro-N-acetylmuramic acid kinase low > 85
Escherichia coli ECOR27 0.43 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.42 NOLOHH_18005 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC62 0.43 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.42 BNILDI_16795 anmK anhydro-N-acetylmuramic acid kinase — —
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.47 CSW01_03615 anhydro-N-acetylmuramic acid kinase low > 62
Escherichia coli Nissle 1917 0.43 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.42 ECOLIN_RS09150 anhydro-N-acetylmuramic acid kinase — —
Escherichia coli BW25113 0.43 b3465 yhhF predicted methyltransferase (NCBI) 0.42 b1640 ydhH anhydro-N-acetylmuramic acid kinase (NCBI) low > 76
Escherichia coli ECRC102 0.43 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.42 NIAGMN_00580 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC101 0.43 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.42 MCAODC_17925 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC99 0.43 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.42 KEDOAH_00620 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC101 0.43 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.42 OKFHMN_27485 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC98 0.43 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.42 JDDGAC_02075 anmK anhydro-N-acetylmuramic acid kinase — —
Shewanella sp. ANA-3 0.43 Shewana3_3973 putative methyltransferase (RefSeq) 0.46 Shewana3_3060 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 73
Escherichia coli BL21 0.43 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.42 ECD_01610 anhydro-N-acetylmuramic acid kinase low > 60
Shewanella oneidensis MR-1 0.43 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.46 SO1313 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.42 Shew_3607 putative methyltransferase (RefSeq) 0.46 Shew_1020 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 60
Pantoea sp. MT58 0.42 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 IAI47_10710 anhydro-N-acetylmuramic acid kinase low > 76
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.43 OKGIIK_15705 anhydro-N-acetylmuramic acid kinase low > 52
Erwinia tracheiphila SCR3 0.41 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.47 LU632_RS11250 anmK anhydro-N-acetylmuramic acid kinase low > 74
Klebsiella michiganensis M5al 0.40 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 BWI76_RS16420 anhydro-N-acetylmuramic acid kinase low > 92
Rhodanobacter denitrificans MT42 0.39 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.43 LRK55_RS08740 anhydro-N-acetylmuramic acid kinase low > 63
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.44 GFF3634 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 78
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.43 LRK54_RS09210 anhydro-N-acetylmuramic acid kinase low > 59
Shewanella amazonensis SB2B 0.39 Sama_3469 hypothetical protein (RefSeq) 0.44 Sama_0848 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 62
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.43 ABZR86_RS15665 anhydro-N-acetylmuramic acid kinase low > 74
Enterobacter asburiae PDN3 0.39 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.45 EX28DRAFT_1636 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 76
Enterobacter sp. TBS_079 0.38 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.45 MPMX20_01998 Anhydro-N-acetylmuramic acid kinase low > 85
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) 0.42 B158DRAFT_0004 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 40
Acinetobacter radioresistens SK82 0.35 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D 0.45 MPMX26_00013 Anhydro-N-acetylmuramic acid kinase low > 36
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS02815 methyltransferase 0.42 BPHYT_RS16645 anhydro-N-acetylmuramic acid kinase low > 109
Lysobacter sp. OAE881 0.35 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.37 ABIE51_RS00040 anhydro-N-acetylmuramic acid kinase low > 62
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.40 QEN71_RS26820 anhydro-N-acetylmuramic acid kinase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.43 H281DRAFT_04259 anhydro-N-acetylmuramic acid kinase low > 103
Castellaniella sp019104865 MT123 0.33 ABCV34_RS10145 RsmD family RNA methyltransferase 0.42 ABCV34_RS10575 anhydro-N-acetylmuramic acid kinase low > 48
Paraburkholderia graminis OAS925 0.32 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase 0.43 ABIE53_003499 anhydro-N-acetylmuramic acid kinase low > 113
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS20695 methyltransferase 0.45 HSERO_RS02010 anhydro-N-acetylmuramic acid kinase low > 78
Acidovorax sp. GW101-3H11 0.29 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.47 Ac3H11_3055 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS01990 methyltransferase 0.44 RR42_RS02660 anhydro-N-acetylmuramic acid kinase low > 128
Phaeobacter inhibens DSM 17395 0.28 PGA1_c29260 ribosomal RNA small subunit methyltransferase D 0.20 PGA1_c11350 anhydro-N-acetylmuramic acid kinase AnmK low > 62
Ralstonia solanacearum PSI07 0.27 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.43 RPSI07_RS21585 anhydro-N-acetylmuramic acid kinase low > 81
Ralstonia solanacearum IBSBF1503 0.27 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 RALBFv3_RS11635 anhydro-N-acetylmuramic acid kinase low > 76
Ralstonia solanacearum UW163 0.27 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 UW163_RS01950 anhydro-N-acetylmuramic acid kinase — —
Ralstonia solanacearum GMI1000 0.26 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 RS_RS02460 anhydro-N-acetylmuramic acid kinase low > 80
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.46 ABZR87_RS07595 anhydro-N-acetylmuramic acid kinase low > 80
Azospirillum brasilense Sp245 0.24 AZOBR_RS04500 methyltransferase 0.26 AZOBR_RS05815 anhydro-N-acetylmuramic acid kinase — —
Bosea sp. OAE506 0.23 ABIE41_RS23215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.23 ABIE41_RS00035 anhydro-N-acetylmuramic acid kinase low > 77
Rhodospirillum rubrum S1H 0.22 Rru_A0653 hypothetical protein (NCBI) 0.26 Rru_A2031 Protein of unknown function UPF0075 (NCBI) — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_0115 putative methyltransferase (RefSeq) 0.19 Dshi_2150 protein of unknown function UPF0075 (RefSeq) low > 64
Azospirillum sp. SherDot2 0.22 MPMX19_01626 Ribosomal RNA small subunit methyltransferase D 0.22 MPMX19_01987 Anhydro-N-acetylmuramic acid kinase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_005985 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.27 TX73_012725 anhydro-N-acetylmuramic acid kinase low > 86
Magnetospirillum magneticum AMB-1 0.22 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.24 AMB_RS15285 anhydro-N-acetylmuramic acid kinase low > 64
Rhizobium sp. OAE497 0.22 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.25 ABIE40_RS10025 anhydro-N-acetylmuramic acid kinase low > 107
Agrobacterium fabrum C58 0.21 Atu0690 hypothetical protein 0.24 Atu1827 hypothetical protein low > 89
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_1480 hypothetical protein 0.26 Synpcc7942_1093 anmK anhydro-N-acetylmuramic acid kinase low > 38
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS12725 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.24 CA265_RS21930 anhydro-N-acetylmuramic acid kinase low > 88

Not shown: 9 genomes with orthologs for PP_5114 only; 10 genomes with orthologs for PP_0434 only