Conservation of cofitness between PP_0003 and PP_0123 in Pseudomonas putida KT2440

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0003 16S RNA methyltransferase 1.0 PP_0123 DNA polymerase I, 5 0.41 1
Pseudomonas sp. BP01 0.98 JOY50_RS08385 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.95 JOY50_RS21110 polA DNA polymerase I low > 84
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_672 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_4204 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_11670 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.80 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_1935 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas sp. RS175 0.83 PFR28_04586 Ribosomal RNA small subunit methyltransferase G 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_10440 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.80 AO353_10930 DNA polymerase I low > 101
Pseudomonas sp. SVBP6 0.82 COO64_RS02075 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.87 COO64_RS02475 polA DNA polymerase I low > 93
Pseudomonas orientalis W4I3 0.82 QF045_RS02900 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.78 QF045_RS03350 DNA polymerase I low > 93
Pseudomonas sp. DMC3 0.80 GFF568 Ribosomal RNA small subunit methyltransferase G 0.77 GFF631 DNA polymerase I low > 89
Pseudomonas fluorescens SBW25 0.79 PFLU_RS30170 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.77 PFLU_RS00395 DNA polymerase I 0.44 32
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_5131 16S rRNA m(7)G-527 methyltransferase 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas simiae WCS417 0.79 PS417_28515 16S rRNA methyltransferase 0.79 PS417_00405 DNA polymerase I low > 88
Pseudomonas fluorescens SBW25-INTG 0.79 PFLU_RS30170 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_5131 16S rRNA m(7)G-527 methyltransferase 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas lactucae CFBP13502 0.77 GEMAOFIL_00173 Ribosomal RNA small subunit methyltransferase G 0.78 GEMAOFIL_00284 DNA polymerase I low > 96
Pseudomonas sp. S08-1 0.74 OH686_12665 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.77 OH686_12215 DNA polymerase I 0.55 35
Pseudomonas aeruginosa PUPa3 0.74 DQ20_RS58580 rsmG;go_component=cellular_component|0005575||IEA;go_function=methyltransferase 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.79 DQ20_RS58195 polA;go_function=nucleic DNA polymerase I low > 101
Pseudomonas aeruginosa MRSN321 0.74 DY961_RS26160 rsmG;go_component=cellular_component|0005575||IEA;go_function=methyltransferase 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.79 DY961_RS25765 polA;go_function=nucleic DNA polymerase I low > 100
Pseudomonas aeruginosa PA14 0.73 IKLFDK_25590 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.79 IKLFDK_25945 DNA polymerase I low > 98
Pseudomonas segetis P6 0.73 MPMX49_00244 Ribosomal RNA small subunit methyltransferase G 0.76 MPMX49_00321 DNA polymerase I low > 75
Pseudomonas stutzeri RCH2 0.65 Psest_4364 16S rRNA (guanine(527)-N(7))-methyltransferase GidB 0.77 Psest_4219 DNA polymerase I low > 67
Marinobacter adhaerens HP15 0.47 HP15_3689 glucose-inhibited division protein B 0.56 HP15_293 DNA polymerase I low > 73
Enterobacter sp. TBS_079 0.46 MPMX20_04627 Ribosomal RNA small subunit methyltransferase G 0.60 MPMX20_04601 DNA polymerase I low > 85
Klebsiella michiganensis M5al 0.46 BWI76_RS00225 16S rRNA methyltransferase G 0.59 BWI76_RS00355 DNA polymerase I low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF1717 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Enterobacter asburiae PDN3 0.45 EX28DRAFT_4016 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Escherichia coli ECRC62 0.45 BNILDI_04600 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli BW25113 0.45 b3740 gidB glucose-inhibited division protein B (NCBI) 0.61 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia fergusonii Becca 0.45 EFB2_04893 Ribosomal RNA small subunit methyltransferase G 0.60 EFB2_04753 DNA polymerase I — —
Escherichia coli Nissle 1917 0.45 ECOLIN_RS21510 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECRC101 0.45 MCAODC_05295 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli ECRC102 0.45 NIAGMN_12545 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC100 0.45 OKFHMN_14790 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC98 0.45 JDDGAC_18410 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_04313 Ribosomal RNA small subunit methyltransferase G 0.61 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECOR27 0.45 NOLOHH_06925 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli BL21 0.45 ECD_03624 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein 0.61 ECD_03749 5 — —
Escherichia coli ECRC99 0.45 KEDOAH_13360 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 KEDOAH_14000 polA DNA polymerase I — —
Pantoea agglomerans CFBP13505 P0401 0.45 PagCFBP13505_RS19040 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.59 PagCFBP13505_RS18920 DNA polymerase I low > 74
Escherichia coli ECOR38 0.45 HEPCGN_13505 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 HEPCGN_12785 polA DNA polymerase I — —
Klebsiella pneumoniae MKP103 0.45 KDGMDA_08835 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.59 KDGMDA_08970 DNA polymerase I — —
Erwinia amylovora T8 0.45 OLJFJH_05315 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.60 OLJFJH_05470 DNA polymerase I low > 58
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_14050 ribosomal RNA small subunit methyltransferase G 0.61 CSW01_00560 DNA polymerase I low > 62
Dechlorosoma suillum PS 0.44 Dsui_0847 16S rRNA (guanine(527)-N(7))-methyltransferase GidB 0.52 Dsui_0459 DNA polymerase I low > 51
Pantoea sp. MT58 0.44 IAI47_00295 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.60 IAI47_00430 DNA polymerase I low > 76
Rahnella sp. WP5 0.43 EX31_RS06135 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 EX31_RS15905 DNA polymerase I low > 89
Serratia liquefaciens MT49 0.43 IAI46_25115 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.60 IAI46_24985 DNA polymerase I low > 87
Erwinia tracheiphila SCR3 0.43 LU632_RS24810 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 LU632_RS23870 polA DNA polymerase I — —
Erwinia tracheiphila HP pepo 2.2 0.42 IJEDHG_09155 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.60 IJEDHG_10990 polA DNA polymerase I — —
Alteromonas macleodii MIT1002 0.42 MIT1002_04123 Ribosomal RNA small subunit methyltransferase G 0.62 MIT1002_00014 DNA polymerase I low > 70
Dickeya dianthicola 67-19 0.42 HGI48_RS21385 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.59 HGI48_RS21260 DNA polymerase I — —
Pectobacterium carotovorum WPP14 0.42 HER17_RS21605 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.61 HER17_RS21470 DNA polymerase I — —
Shewanella sp. ANA-3 0.42 Shewana3_0001 gidB 16S rRNA methyltransferase GidB (RefSeq) 0.61 Shewana3_4109 DNA polymerase I (RefSeq) — —
Dickeya dadantii 3937 0.41 DDA3937_RS21600 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.59 DDA3937_RS00105 DNA polymerase I — —
Dickeya dianthicola ME23 0.41 DZA65_RS22365 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.59 DZA65_RS22235 DNA polymerase I — —
Shewanella oneidensis MR-1 0.41 SO4757 gidB glucose-inhibited division protein B (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Shewanella loihica PV-4 0.41 Shew_3855 gidB glucose-inhibited division protein B (RefSeq) 0.60 Shew_3714 DNA polymerase I (RefSeq) low > 60
Rhodanobacter sp000427505 FW510-R12 0.40 LRK53_RS02455 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.56 LRK53_RS01570 DNA polymerase I low > 59
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0378 16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170) 0.57 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_15445 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.56 OKGIIK_16785 polA DNA polymerase I low > 53
Methylophilus sp. DMC18 0.40 GFF2101 Ribosomal RNA small subunit methyltransferase G 0.52 GFF1658 DNA polymerase I low > 43
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS08680 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.56 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter denitrificans MT42 0.40 LRK55_RS08445 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.56 LRK55_RS06585 DNA polymerase I low > 63
Shewanella amazonensis SB2B 0.39 Sama_3654 gidB 16S rRNA methyltransferase GidB (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS04120 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.52 ABZR87_RS15680 DNA polymerase I low > 80
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS08860 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.51 RALBFv3_RS03750 DNA polymerase I — —
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS29340 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.52 QEN71_RS17885 DNA polymerase I — —
Ralstonia solanacearum UW163 0.39 UW163_RS04750 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.51 UW163_RS09920 DNA polymerase I — —
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4955 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Variovorax sp. SCN45 0.38 GFF3337 16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170) 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Lysobacter sp. OAE881 0.38 ABIE51_RS01740 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Ralstonia solanacearum PSI07 0.38 RPSI07_RS08415 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS14875 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Variovorax sp. OAS795 0.38 ABID97_RS02910 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.48 ABID97_RS09180 DNA polymerase I low > 91
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_02386 16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170) 0.50 H281DRAFT_06022 DNA polymerase I low > 103
Ralstonia solanacearum GMI1000 0.37 RS_RS16670 ribosomal RNA small subunit methyltransferase G 0.51 RS_RS11195 DNA polymerase I — —
Paraburkholderia graminis OAS925 0.37 ABIE53_000263 16S rRNA (guanine527-N7)-methyltransferase 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS19435 16S rRNA methyltransferase 0.51 BPHYT_RS33610 DNA polymerase I low > 109
Acinetobacter baumannii LAC-4 0.37 RR41_RS12025 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.49 RR41_RS15915 DNA polymerase I — —
Acinetobacter radioresistens SK82 0.36 MPMX26_01214 Ribosomal RNA small subunit methyltransferase G 0.48 MPMX26_00574 DNA polymerase I low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF2017 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS20210 16S rRNA methyltransferase 0.52 RR42_RS15050 DNA polymerase I low > 128
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.5135.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Castellaniella sp019104865 MT123 0.32 ABCV34_RS11720 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Echinicola vietnamensis KMM 6221, DSM 17526 0.21 Echvi_2046 16S rRNA (guanine(527)-N(7))-methyltransferase GidB 0.36 Echvi_1032 DNA polymerase I low > 79
Rhodospirillum rubrum S1H 0.18 Rru_A3626 Glucose inhibited division protein (NCBI) 0.36 Rru_A3514 DNA polymerase A (NCBI) — —
Synechococcus elongatus PCC 7942 0.18 Synpcc7942_0267 gidB glucose-inhibited division protein B 0.31 Synpcc7942_0194 polA DNA polymerase I — —
Magnetospirillum magneticum AMB-1 0.17 AMB_RS00015 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.39 AMB_RS21305 DNA polymerase I — —
Brevundimonas sp. GW460-12-10-14-LB2 0.14 A4249_RS13710 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.39 A4249_RS13840 DNA polymerase I — —
Azospirillum sp. SherDot2 0.14 MPMX19_02570 Ribosomal RNA small subunit methyltransferase G 0.38 MPMX19_04869 DNA polymerase I — —
Caulobacter crescentus NA1000 Δfur 0.13 CCNA_03870 methyltransferase GidB 0.40 CCNA_03577 DNA polymerase I low > 67
Caulobacter crescentus NA1000 0.13 CCNA_03870 methyltransferase GidB 0.40 CCNA_03577 DNA polymerase I low > 66

Not shown: 1 genomes with orthologs for PP_0003 only; 24 genomes with orthologs for PP_0123 only