Conservation of cofitness between MPMX19_00876 and MPMX19_02151 in Azospirillum sp. SherDot2

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Azospirillum sp. SherDot2 1.0 MPMX19_00876 Transcription-repair-coupling factor 1.0 MPMX19_02151 Long-chain-fatty-acid--CoA ligase 0.73 18
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_01920 transcription-repair coupling factor Mfd 0.23 CCNA_01382 long-chain-fatty-acid--CoA ligase low > 67
Caulobacter crescentus NA1000 0.53 CCNA_01920 transcription-repair coupling factor Mfd 0.23 CCNA_01382 long-chain-fatty-acid--CoA ligase low > 66
Xanthobacter sp. DMC5 0.53 GFF946 Transcription-repair-coupling factor 0.50 GFF521 Long-chain-fatty-acid--CoA ligase — —
Agrobacterium fabrum C58 0.52 Atu1778 transcription-repair coupling factor 0.32 Atu0405 long-chain-fatty-acid-CoA-ligase low > 89
Bosea sp. OAE506 0.52 ABIE41_RS15825 transcription-repair coupling factor 0.32 ABIE41_RS11685 AMP-binding protein low > 77
Sinorhizobium meliloti 1021 0.51 SMc04450 transcription-repair coupling factor 0.30 SMc02162 long-chain-fatty-acid--CoA ligase low > 103
Rhodopseudomonas palustris CGA009 0.51 TX73_013805 transcription-repair coupling factor 0.35 TX73_019250 dicarboxylate--CoA ligase PimA low > 86
Rhizobium sp. OAE497 0.51 ABIE40_RS09310 transcription-repair coupling factor 0.31 ABIE40_RS02155 long-chain fatty acid--CoA ligase low > 107
Dinoroseobacter shibae DFL-12 0.49 Dshi_1561 transcription-repair coupling factor (RefSeq) 0.28 Dshi_1000 AMP-dependent synthetase and ligase (RefSeq) low > 64
Sphingobium sp. HT1-2 0.49 GFF3606 Transcription-repair coupling factor 0.47 GFF4751 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 95
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS02040 transcription-repair coupling factor 0.32 LRK54_RS00795 long-chain-fatty-acid--CoA ligase low > 59
Rhodanobacter denitrificans MT42 0.32 LRK55_RS01815 transcription-repair coupling factor 0.32 LRK55_RS00570 long-chain-fatty-acid--CoA ligase 0.80 7
Pseudomonas stutzeri RCH2 0.31 Psest_1653 transcription-repair coupling factor (mfd) 0.31 Psest_1335 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) low > 67
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_02552 Transcription-repair-coupling factor 0.31 OHPLBJKB_01928 Long-chain-fatty-acid--CoA ligase low > 74
Escherichia coli ECOR38 0.31 HEPCGN_24015 mfd transcription-repair coupling factor 0.31 HEPCGN_04985 fadD long-chain-fatty-acid--CoA ligase FadD low > 88
Escherichia fergusonii Becca 0.31 EFB2_02861 Transcription-repair-coupling factor 0.32 EFB2_02195 Long-chain-fatty-acid--CoA ligase low > 86
Escherichia coli BW25113 0.31 b1114 mfd transcription-repair coupling factor (NCBI) 0.31 b1805 fadD acyl-CoA synthase (NCBI) low > 76
Escherichia coli ECOR27 0.31 NOLOHH_20995 mfd transcription-repair coupling factor 0.31 NOLOHH_17115 fadD long-chain-fatty-acid--CoA ligase FadD low > 76
Escherichia coli ECRC62 0.31 BNILDI_19160 mfd transcription-repair coupling factor 0.31 BNILDI_15900 fadD long-chain-fatty-acid--CoA ligase FadD low > 75
Escherichia coli ECRC102 0.31 NIAGMN_24360 mfd transcription-repair coupling factor 0.31 NIAGMN_01470 fadD long-chain-fatty-acid--CoA ligase FadD low > 80
Pectobacterium carotovorum WPP14 0.31 HER17_RS08775 transcription-repair coupling factor 0.30 HER17_RS11275 long-chain-fatty-acid--CoA ligase FadD low > 75
Escherichia coli ECRC99 0.31 KEDOAH_24285 mfd transcription-repair coupling factor 0.31 KEDOAH_01515 fadD long-chain-fatty-acid--CoA ligase FadD — —
Escherichia coli ECRC100 0.31 OKFHMN_03470 mfd transcription-repair coupling factor 0.31 OKFHMN_26595 fadD long-chain-fatty-acid--CoA ligase FadD low > 79
Escherichia coli ECRC101 0.31 MCAODC_22830 mfd transcription-repair coupling factor 0.31 MCAODC_18815 fadD long-chain-fatty-acid--CoA ligase FadD low > 88
Escherichia coli ECRC98 0.31 JDDGAC_07130 mfd transcription-repair coupling factor 0.31 JDDGAC_01170 fadD long-chain-fatty-acid--CoA ligase FadD low > 87
Escherichia coli BL21 0.31 ECD_01110 transcription-repair coupling factor 0.31 ECD_01775 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) low > 61
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_09445 transcription-repair coupling factor 0.29 CSW01_09905 long-chain-fatty-acid--CoA ligase FadD low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF3397 Transcription-repair coupling factor 0.31 GFF2820 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 78
Rhodanobacter sp000427505 FW510-R12 0.31 LRK53_RS08005 transcription-repair coupling factor 0.32 LRK53_RS09335 long-chain-fatty-acid--CoA ligase low > 59
Shewanella amazonensis SB2B 0.31 Sama_1330 transcription-repair coupling factor (RefSeq) 0.29 Sama_1934 long-chain-fatty-acid--CoA ligase (RefSeq) low > 62
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_09105 mfd transcription-repair coupling factor 0.32 OKGIIK_06445 menE,fadK long-chain-fatty-acid--CoA ligase low > 53
Pseudomonas segetis P6 0.31 MPMX49_01844 Transcription-repair-coupling factor 0.30 MPMX49_03275 Long-chain-fatty-acid--CoA ligase low > 75
Rahnella sp. WP5 0.31 EX31_RS24520 transcription-repair coupling factor 0.30 EX31_RS10600 long-chain-fatty-acid--CoA ligase FadD low > 89
Enterobacter sp. TBS_079 0.31 MPMX20_01795 Transcription-repair-coupling factor 0.32 MPMX20_02711 Long-chain-fatty-acid--CoA ligase low > 85
Lysobacter sp. OAE881 0.31 ABIE51_RS14320 transcription-repair coupling factor 0.32 ABIE51_RS11545 long-chain fatty acid--CoA ligase low > 62
Pseudomonas sp. SVBP6 0.31 COO64_RS09460 mfd transcription-repair coupling factor 0.31 COO64_RS22020 fadD2 long-chain-fatty-acid--CoA ligase FadD2 low > 93
Pseudomonas sp. S08-1 0.31 OH686_21990 transcription-repair coupling factor 0.29 OH686_05750 Long-chain-fatty-acid--CoA ligase low > 80
Enterobacter asburiae PDN3 0.31 EX28DRAFT_1816 transcription-repair coupling factor (mfd) 0.32 EX28DRAFT_0753 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II low > 76
Serratia liquefaciens MT49 0.31 IAI46_10320 transcription-repair coupling factor 0.31 IAI46_14535 long-chain-fatty-acid--CoA ligase FadD low > 86
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS21210 transcription-repair coupling factor 0.31 ABZR86_RS02155 AMP-binding protein low > 74
Pseudomonas sp. RS175 0.31 PFR28_01123 Transcription-repair-coupling factor 0.30 PFR28_00584 Long-chain-fatty-acid--CoA ligase low > 88
Dickeya dianthicola 67-19 0.31 HGI48_RS13065 transcription-repair coupling factor 0.29 HGI48_RS11260 long-chain-fatty-acid--CoA ligase FadD low > 71
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_2278 Transcription-repair coupling factor 0.30 Pf6N2E2_2873 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 103
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_1896 transcription-repair coupling factor 0.30 Psyr_3834 AMP-dependent synthetase and ligase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_1896 transcription-repair coupling factor 0.30 Psyr_3834 AMP-dependent synthetase and ligase low > 86
Klebsiella michiganensis M5al 0.31 BWI76_RS11205 transcription-repair coupling factor 0.31 BWI76_RS17800 long-chain-fatty-acid--CoA ligase low > 92
Pseudomonas simiae WCS417 0.30 PS417_07635 transcription-repair coupling factor 0.29 PS417_22065 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) low > 88
Dickeya dianthicola ME23 0.30 DZA65_RS13530 transcription-repair coupling factor 0.29 DZA65_RS11605 long-chain-fatty-acid--CoA ligase FadD low > 75
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_4027 Transcription-repair coupling factor 0.29 PfGW456L13_1910 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 87
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_02270 transcription-repair coupling factor 0.29 AO356_05105 long-chain fatty acid--CoA ligase low > 104
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS07710 transcription-repair coupling factor 0.30 PFLU_RS23685 long-chain-fatty-acid--CoA ligase low > 109
Pseudomonas lactucae CFBP13502 0.30 GEMAOFIL_01659 Transcription-repair-coupling factor 0.29 GEMAOFIL_04550 Long-chain-fatty-acid--CoA ligase low > 93
Pseudomonas fluorescens SBW25 0.30 PFLU_RS07710 transcription-repair coupling factor 0.30 PFLU_RS23685 long-chain-fatty-acid--CoA ligase low > 109
Erwinia amylovora T8 0.30 OLJFJH_15445 transcription-repair coupling factor 0.31 OLJFJH_13100 long-chain-fatty-acid--CoA ligase FadD low > 58
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_00435 transcription-repair coupling factor 0.30 AO353_03315 long-chain fatty acid--CoA ligase low > 101
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_1800 transcription-repair coupling factor 0.29 B158DRAFT_1573 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II low > 40
Shewanella oneidensis MR-1 0.30 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) 0.30 SO2581 fadD-1 long-chain-fatty-acid--CoA ligase (NCBI ptt file) low > 76
Pantoea sp. MT58 0.30 IAI47_11975 transcription-repair coupling factor 0.31 IAI47_08835 long-chain-fatty-acid--CoA ligase FadD low > 76
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS07845 transcription-repair coupling factor 0.31 RR42_RS18150 long-chain fatty acid--CoA ligase low > 128
Pantoea agglomerans CFBP13505 P0401 0.30 PagCFBP13505_RS19410 transcription-repair coupling factor 0.31 PagCFBP13505_RS02670 long-chain-fatty-acid--CoA ligase FadD low > 74
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS22060 transcription-repair coupling factor 0.32 QEN71_RS27455 long-chain fatty acid--CoA ligase low > 153
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS13240 transcription-repair coupling factor 0.33 ABZR87_RS02020 long-chain fatty acid--CoA ligase low > 80
Dechlorosoma suillum PS 0.30 Dsui_2385 transcription-repair coupling factor Mfd 0.30 Dsui_3212 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II low > 51
Shewanella sp. ANA-3 0.30 Shewana3_2289 transcription-repair coupling factor (RefSeq) 0.30 Shewana3_2386 long-chain-fatty-acid--CoA ligase (RefSeq) low > 73
Klebsiella pneumoniae MKP103 0.30 KDGMDA_18800 transcription-repair coupling factor 0.32 KDGMDA_25120 long-chain-fatty-acid--CoA ligase FadD low > 95
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS01445 transcription-repair coupling factor 0.33 RALBFv3_RS06340 long-chain-fatty-acid--CoA ligase low > 76
Ralstonia solanacearum UW163 0.30 UW163_RS14755 transcription-repair coupling factor 0.33 UW163_RS07285 long-chain-fatty-acid--CoA ligase — —
Marinobacter adhaerens HP15 0.30 HP15_2257 transcription-repair-coupling factor 0.31 HP15_1864 acyl-CoA synthase low > 73
Acidovorax sp. GW101-3H11 0.30 Ac3H11_328 Transcription-repair coupling factor 0.32 Ac3H11_663 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 79
Ralstonia solanacearum GMI1000 0.30 RS_RS08275 transcription-repair coupling factor 0.32 RS_RS14290 long-chain-fatty-acid--CoA ligase low > 80
Alteromonas macleodii MIT1002 0.30 MIT1002_01646 Transcription-repair-coupling factor 0.28 MIT1002_02588 Long-chain-fatty-acid--CoA ligase low > 70
Shewanella loihica PV-4 0.30 Shew_1630 transcription-repair coupling factor (RefSeq) 0.30 Shew_2188 long-chain-fatty-acid--CoA ligase (RefSeq) low > 60
Ralstonia solanacearum PSI07 0.30 RPSI07_RS16040 transcription-repair coupling factor 0.33 RPSI07_RS10900 long-chain-fatty-acid--CoA ligase low > 81
Burkholderia phytofirmans PsJN 0.30 BPHYT_RS09290 helicase 0.31 BPHYT_RS08270 long-chain fatty acid--CoA ligase low > 109
Paraburkholderia graminis OAS925 0.29 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) 0.31 ABIE53_002420 long-chain acyl-CoA synthetase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.29 H281DRAFT_00880 transcription-repair coupling factor 0.31 H281DRAFT_05129 long-chain acyl-CoA synthetase low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF4934 Transcription-repair coupling factor 0.32 GFF2607 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 90
Variovorax sp. OAS795 0.29 ABID97_RS17285 transcription-repair coupling factor 0.31 ABID97_RS04445 long-chain-fatty-acid--CoA ligase low > 91
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS15180 transcription-repair coupling factor 0.33 HSERO_RS19285 long-chain fatty acid--CoA ligase low > 78
Variovorax sp. SCN45 0.29 GFF412 Transcription-repair coupling factor 0.47 GFF4913 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 127
Acinetobacter radioresistens SK82 0.28 MPMX26_01319 Transcription-repair-coupling factor 0.32 MPMX26_00141 Long-chain-fatty-acid--CoA ligase low > 36
Acinetobacter baumannii LAC-4 0.28 RR41_RS12305 transcription-repair coupling factor 0.32 RR41_RS17925 long-chain-fatty-acid--CoA ligase low > 55
Desulfovibrio vulgaris Hildenborough JW710 0.25 DVU1903 mfd transcription-repair coupling factor (TIGR) 0.37 DVU1453 fadD long-chain-fatty-acid--CoA ligase (TIGR) low > 55
Pseudomonas putida KT2440 0.25 PP_2148 transcription-repair coupling factor 0.31 PP_4550 long-chain-fatty-acid/CoA ligase low > 96
Pseudomonas sp. BP01 0.25 JOY50_RS25100 mfd transcription-repair coupling factor 0.31 JOY50_RS01315 fadD2 long-chain-fatty-acid--CoA ligase FadD2 low > 84
Pseudomonas aeruginosa PA14 0.24 IKLFDK_15275 transcription-repair coupling factor 0.31 IKLFDK_16900 long-chain-fatty-acid--CoA ligase low > 100
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3916 Transcription-repair coupling factor 0.27 Pf1N1B4_575 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 87
Desulfovibrio vulgaris Miyazaki F 0.24 DvMF_0285 transcription-repair coupling factor (RefSeq) 0.39 DvMF_0256 AMP-dependent synthetase and ligase (RefSeq) low > 51

Not shown: 13 genomes with orthologs for MPMX19_00876 only; 5 genomes with orthologs for MPMX19_02151 only