| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF4198 | | Thiamin biosynthesis protein ThiC | 1.0 | GFF828 | | HflC protein | 0.33 | 15 |
| Enterobacter asburiae PDN3 | 0.96 | EX28DRAFT_4536 | | phosphomethylpyrimidine synthase | 0.85 | EX28DRAFT_3372 | | HflC protein | low | > 76 |
| Enterobacter sp. TBS_079 | 0.96 | MPMX20_00217 | | Phosphomethylpyrimidine synthase | 0.88 | MPMX20_00456 | | Modulator of FtsH protease HflC | low | > 85 |
| Escherichia fergusonii Becca | 0.95 | EFB2_04617 | | Phosphomethylpyrimidine synthase | 0.90 | EFB2_04360 | | Modulator of FtsH protease HflC | low | > 86 |
| Escherichia coli Nissle 1917 | 0.95 | ECOLIN_RS23040 | | phosphomethylpyrimidine synthase ThiC | 0.90 | ECOLIN_RS24245 | | protease modulator HflC | — | — |
| Escherichia coli ECRC99 | 0.95 | KEDOAH_14785 | thiC | phosphomethylpyrimidine synthase ThiC | 0.90 | KEDOAH_15915 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECRC100 | 0.95 | OKFHMN_13375 | thiC | phosphomethylpyrimidine synthase ThiC | 0.90 | OKFHMN_12240 | hflC | protease modulator HflC | low | > 80 |
| Escherichia coli ECRC98 | 0.95 | JDDGAC_17000 | thiC | phosphomethylpyrimidine synthase ThiC | 0.90 | JDDGAC_15880 | hflC | protease modulator HflC | low | > 86 |
| Escherichia coli BL21 | 0.95 | ECD_03871 | | phosphomethylpyrimidine synthase | 0.90 | ECD_04042 | | HflB protease modulator specific for phage lambda cII repressor | low | > 61 |
| Escherichia coli ECRC102 | 0.95 | NIAGMN_11125 | thiC | phosphomethylpyrimidine synthase ThiC | 0.90 | NIAGMN_10090 | hflC | protease modulator HflC | — | — |
| Escherichia coli ECRC101 | 0.95 | MCAODC_03875 | thiC | phosphomethylpyrimidine synthase ThiC | 0.90 | MCAODC_02755 | hflC | protease modulator HflC | low | > 87 |
| Escherichia coli ECRC62 | 0.94 | BNILDI_06005 | thiC | phosphomethylpyrimidine synthase ThiC | 0.90 | BNILDI_06985 | hflC | protease modulator HflC | low | > 75 |
| Escherichia coli BW25113 | 0.94 | b3994 | thiC | thiamine biosynthesis protein ThiC (NCBI) | 0.90 | b4175 | hflC | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.94 | OHPLBJKB_04056 | | Phosphomethylpyrimidine synthase | 0.90 | OHPLBJKB_03867 | | Modulator of FtsH protease HflC | low | > 73 |
| Escherichia coli ECOR38 | 0.94 | HEPCGN_12010 | thiC | phosphomethylpyrimidine synthase ThiC | 0.90 | HEPCGN_10470 | hflC | protease modulator HflC | low | > 87 |
| Escherichia coli ECOR27 | 0.94 | NOLOHH_05520 | thiC | phosphomethylpyrimidine synthase ThiC | 0.90 | NOLOHH_04505 | hflC | protease modulator HflC | low | > 75 |
| Klebsiella michiganensis M5al | 0.93 | BWI76_RS01555 | | phosphomethylpyrimidine synthase ThiC | 0.89 | BWI76_RS02550 | | protease modulator HflC | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.87 | HER17_RS20380 | | phosphomethylpyrimidine synthase ThiC | 0.79 | HER17_RS02600 | | protease modulator HflC | low | > 75 |
| Rahnella sp. WP5 | 0.86 | EX31_RS16815 | | phosphomethylpyrimidine synthase ThiC | 0.80 | EX31_RS08805 | | protease modulator HflC | low | > 89 |
| Dickeya dianthicola ME23 | 0.85 | DZA65_RS01215 | | phosphomethylpyrimidine synthase ThiC | 0.75 | DZA65_RS19665 | | protease modulator HflC | low | > 75 |
| Dickeya dadantii 3937 | 0.85 | DDA3937_RS01175 | | phosphomethylpyrimidine synthase ThiC | 0.75 | DDA3937_RS18595 | | protease modulator HflC | — | — |
| Pantoea sp. MT58 | 0.84 | IAI47_18085 | | phosphomethylpyrimidine synthase ThiC | 0.82 | IAI47_02605 | | protease modulator HflC | low | > 76 |
| Serratia liquefaciens MT49 | 0.84 | IAI46_01320 | | phosphomethylpyrimidine synthase ThiC | 0.80 | IAI46_01640 | | protease modulator HflC | low | > 86 |
| Dickeya dianthicola 67-19 | 0.84 | HGI48_RS01170 | | phosphomethylpyrimidine synthase ThiC | 0.75 | HGI48_RS18530 | | protease modulator HflC | low | > 71 |
| Erwinia tracheiphila SCR3 | 0.83 | LU632_RS00970 | thiC | phosphomethylpyrimidine synthase ThiC | 0.83 | LU632_RS02070 | hflC | protease modulator HflC | low | > 74 |
| Shewanella loihica PV-4 | 0.77 | Shew_2096 | | thiamine biosynthesis protein ThiC (RefSeq) | 0.47 | Shew_0569 | | HflC protein (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.76 | Sama_1860 | | thiamine biosynthesis protein ThiC (RefSeq) | 0.46 | Sama_3022 | | hflC protein (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.76 | MIT1002_00097 | | Phosphomethylpyrimidine synthase | 0.49 | MIT1002_03785 | | Modulator of FtsH protease HflC | low | > 70 |
| Shewanella oneidensis MR-1 | 0.74 | SO2445 | thiC | thiamin biosynthesis protein ThiC (NCBI ptt file) | 0.48 | SO0606 | hflC | hflC protein (NCBI ptt file) | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.74 | CSW01_00335 | | phosphomethylpyrimidine synthase | 0.51 | CSW01_01850 | | protease modulator HflC | low | > 62 |
| Shewanella sp. ANA-3 | 0.74 | Shewana3_1936 | | thiamine biosynthesis protein ThiC (RefSeq) | 0.49 | Shewana3_0600 | | HflC protein (RefSeq) | low | > 73 |
| Pseudomonas sp. RS175 | 0.72 | PFR28_05091 | | Phosphomethylpyrimidine synthase | 0.29 | PFR28_05124 | | Modulator of FtsH protease HflC | low | > 88 |
| Pseudomonas putida KT2440 | 0.71 | PP_4922 | | Phosphomethylpyrimidine synthase | 0.30 | PP_4891 | | integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex | low | > 96 |
| Pseudomonas fluorescens FW300-N1B4 | 0.71 | Pf1N1B4_1447 | | Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) | 0.32 | Pf1N1B4_1409 | | HflC protein | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.71 | Pf6N2E2_3644 | | Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) | 0.31 | Pf6N2E2_3611 | | HflC protein | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.71 | AO356_08810 | | thiamine biosynthesis protein ThiC | 0.31 | AO356_08640 | | membrane protease HflC | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.71 | PfGW456L13_187 | | Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) | 0.31 | PfGW456L13_151 | | HflC protein | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.71 | Psyr_0544 | | hydroxymethylpyrimidine synthase | 0.31 | Psyr_0575 | | protease FtsH subunit HflC | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.71 | Psyr_0544 | | hydroxymethylpyrimidine synthase | 0.31 | Psyr_0575 | | protease FtsH subunit HflC | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.71 | Psest_0477 | | thiamine biosynthesis protein ThiC | 0.30 | Psest_0686 | | Membrane protease subunits, stomatin/prohibitin homologs | — | — |
| Pseudomonas sp. S08-1 | 0.71 | OH686_15885 | | phosphomethylpyrimidine synthase | 0.29 | OH686_09455 | | HflC protein | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.71 | AO353_13010 | | thiamine biosynthesis protein ThiC | 0.31 | AO353_13160 | | membrane protease HflC | low | > 101 |
| Marinobacter adhaerens HP15 | 0.71 | HP15_453 | | thiamine biosynthesis protein thiC | 0.31 | HP15_2496 | | HflC | low | > 73 |
| Pseudomonas simiae WCS417 | 0.71 | PS417_02355 | | thiamine biosynthesis protein ThiC | 0.28 | PS417_02505 | | membane protease HflC | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.71 | PFLU_RS02430 | | phosphomethylpyrimidine synthase ThiC | 0.30 | PFLU_RS02585 | | protease modulator HflC | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.71 | PFLU_RS02430 | | phosphomethylpyrimidine synthase ThiC | 0.30 | PFLU_RS02585 | | protease modulator HflC | low | > 109 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.70 | Echvi_3567 | | thiamine biosynthesis protein ThiC | 0.20 | Echvi_2032 | | HflC protein | low | > 79 |
| Herbaspirillum seropedicae SmR1 | 0.70 | HSERO_RS02120 | | phosphomethylpyrimidine synthase ThiC | 0.28 | HSERO_RS14760 | | membrane protein | low | > 78 |
| Dechlorosoma suillum PS | 0.69 | Dsui_0422 | | thiamine biosynthesis protein ThiC | 0.33 | Dsui_3134 | | membrane protease subunit, stomatin/prohibitin | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.69 | ABZR86_RS17230 | | phosphomethylpyrimidine synthase ThiC | 0.30 | ABZR86_RS08350 | | protease modulator HflC | low | > 74 |
| Burkholderia phytofirmans PsJN | 0.69 | BPHYT_RS13220 | | phosphomethylpyrimidine synthase | 0.19 | BPHYT_RS12540 | | membrane protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.69 | OKGIIK_16965 | thiC | phosphomethylpyrimidine synthase ThiC | 0.33 | OKGIIK_06645 | hflC | protease modulator HflC | low | > 52 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.68 | H281DRAFT_00395 | | hydroxymethylpyrimidine synthase | 0.22 | H281DRAFT_00524 | | protease FtsH subunit HflC | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.68 | QEN71_RS05480 | | phosphomethylpyrimidine synthase ThiC | 0.21 | QEN71_RS06015 | | protease modulator HflC | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.68 | ABIE53_002857 | | phosphomethylpyrimidine synthase | 0.24 | ABIE53_002734 | | membrane protease subunit HflC | low | > 113 |
| Castellaniella sp019104865 MT123 | 0.68 | ABCV34_RS10825 | | phosphomethylpyrimidine synthase ThiC | 0.26 | ABCV34_RS02665 | | protease modulator HflC | — | — |
| Lysobacter sp. OAE881 | 0.68 | ABIE51_RS17515 | | phosphomethylpyrimidine synthase ThiC | 0.30 | ABIE51_RS06555 | | protease modulator HflC | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.68 | ABZR87_RS04785 | | phosphomethylpyrimidine synthase ThiC | 0.28 | ABZR87_RS10955 | | protease modulator HflC | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.68 | RPSI07_RS23420 | | phosphomethylpyrimidine synthase ThiC | 0.30 | RPSI07_RS18060 | | protease modulator HflC | low | > 81 |
| Kangiella aquimarina DSM 16071 | 0.67 | B158DRAFT_0295 | | hydroxymethylpyrimidine synthase | 0.35 | B158DRAFT_1955 | | HflC protein | low | > 40 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.67 | Xcc-8004.1066.1 | | hypothetical protein | 0.29 | Xcc-8004.3954.1 | | HflC protein | low | > 74 |
| Ralstonia solanacearum GMI1000 | 0.67 | RS_RS00555 | | phosphomethylpyrimidine synthase | 0.30 | RS_RS06125 | | protease modulator HflC | — | — |
| Ralstonia solanacearum UW163 | 0.67 | UW163_RS03640 | | phosphomethylpyrimidine synthase ThiC | 0.30 | UW163_RS12780 | | protease modulator HflC | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.67 | RALBFv3_RS09940 | | phosphomethylpyrimidine synthase ThiC | 0.30 | RALBFv3_RS15315 | | protease modulator HflC | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.67 | RR42_RS01290 | | thiamine biosynthesis protein ThiC | 0.29 | RR42_RS13100 | | membrane protein | — | — |
| Magnetospirillum magneticum AMB-1 | 0.65 | AMB_RS01125 | | phosphomethylpyrimidine synthase | 0.28 | AMB_RS17655 | | protease modulator HflC | — | — |
| Azospirillum brasilense Sp245 | 0.65 | AZOBR_RS07940 | | phosphomethylpyrimidine synthase | 0.26 | AZOBR_RS06525 | | membrane protein | low | > 97 |
| Phaeobacter inhibens DSM 17395 | 0.65 | PGA1_c09110 | | thiamine biosynthesis protein ThiC | 0.29 | PGA1_c23700 | | protein HflC | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.64 | Dshi_4080 | | thiamine biosynthesis protein ThiC (RefSeq) | 0.28 | Dshi_2735 | | HflC protein (RefSeq) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.64 | GFF166 | | Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) | 0.20 | GFF4855 | | HflC protein | low | > 90 |
| Sinorhizobium meliloti 1021 | 0.64 | SM_b20615 | | thiamine biosynthesis protein ThiC | 0.23 | SMc01440 | | hydrolase serine protease transmembrane protein | low | > 103 |
| Acidovorax sp. GW101-3H11 | 0.64 | Ac3H11_2027 | | Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) | 0.25 | Ac3H11_1802 | | HflC protein | low | > 79 |
| Variovorax sp. SCN45 | 0.64 | GFF2000 | | Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17) | 0.24 | GFF1003 | | HflC protein | 0.62 | 63 |
| Agrobacterium fabrum C58 | 0.63 | Atu2569 | | thiamine biosynthesis protein | 0.26 | Atu2044 | | HFLC protein | low | > 89 |
| Variovorax sp. OAS795 | 0.63 | ABID97_RS25235 | | phosphomethylpyrimidine synthase ThiC | 0.24 | ABID97_RS14265 | | protease modulator HflC | low | > 91 |
| Azospirillum sp. SherDot2 | 0.63 | MPMX19_00336 | | Phosphomethylpyrimidine synthase | 0.29 | MPMX19_01250 | | Modulator of FtsH protease HflC | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.62 | Ga0059261_2424 | | hydroxymethylpyrimidine synthase | 0.14 | Ga0059261_1381 | | Membrane protease subunits, stomatin/prohibitin homologs | low | > 68 |
| Rhodopseudomonas palustris CGA009 | 0.61 | TX73_018540 | | phosphomethylpyrimidine synthase ThiC | 0.28 | TX73_018075 | | protease modulator HflC | low | > 86 |
| Bosea sp. OAE506 | 0.60 | ABIE41_RS02770 | | phosphomethylpyrimidine synthase ThiC | 0.27 | ABIE41_RS12855 | | protease modulator HflC | low | > 77 |
| Rhodospirillum rubrum S1H | 0.58 | Rru_A2008 | | Thiamine biosynthesis protein ThiC (NCBI) | 0.27 | Rru_A2202 | | HflC (NCBI) | — | — |