Conservation of cofitness between PS417_04435 and PS417_23910 in Pseudomonas simiae WCS417

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_04435 uracil phosphoribosyltransferase 1.0 PS417_23910 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.37 10
Pseudomonas fluorescens SBW25 0.98 PFLU_RS04485 uracil phosphoribosyltransferase 0.98 PFLU_RS25750 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS04485 uracil phosphoribosyltransferase 0.98 PFLU_RS25750 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 109
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_14855 uracil phosphoribosyltransferase 0.89 AO353_14385 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 101
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_1597 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.86 PfGW456L13_1521 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) low > 87
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_5235 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.86 Pf6N2E2_5153 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.94 Psyr_0969 uracil phosphoribosyltransferase 0.83 Psyr_0828 ketopantoate hydroxymethyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.94 Psyr_0969 uracil phosphoribosyltransferase 0.83 Psyr_0828 ketopantoate hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_16565 uracil phosphoribosyltransferase 0.87 AO356_16060 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 104
Pseudomonas sp. RS175 0.93 PFR28_03641 Uracil phosphoribosyltransferase 0.85 PFR28_03721 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2934 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.87 Pf1N1B4_2854 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) low > 87
Pseudomonas putida KT2440 0.93 PP_0746 Uracil phosphoribosyltransferase 0.85 PP_4699 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 96
Pseudomonas sp. S08-1 0.92 OH686_17985 uracil phosphoribosyltransferase 0.80 OH686_17245 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Pseudomonas stutzeri RCH2 0.90 Psest_1120 uracil phosphoribosyltransferase 0.75 Psest_0996 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Marinobacter adhaerens HP15 0.79 HP15_2306 uracil phosphoribosyltransferase 0.61 HP15_324 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Acinetobacter radioresistens SK82 0.78 MPMX26_02542 Uracil phosphoribosyltransferase 0.54 MPMX26_00545 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 36
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0170 uracil phosphoribosyltransferase (EC 2.4.2.9) 0.56 EX28DRAFT_3730 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_03352 Uracil phosphoribosyltransferase 0.57 MPMX20_00827 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 85
Klebsiella michiganensis M5al 0.74 BWI76_RS20945 uracil phosphoribosyltransferase 0.56 BWI76_RS04995 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF2171 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.55 GFF91 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) low > 78
Escherichia coli BW25113 0.73 b2498 upp uracil phosphoribosyltransferase (VIMSS) 0.57 b0134 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) low > 76
Escherichia coli ECRC102 0.73 NIAGMN_19585 upp uracil phosphoribosyltransferase 0.57 NIAGMN_08250 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Escherichia coli BL21 0.73 ECD_02390 uracil phosphoribosyltransferase 0.57 ECD_00133 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 60
Escherichia coli Nissle 1917 0.73 ECOLIN_RS14185 uracil phosphoribosyltransferase 0.57 ECOLIN_RS00745 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Escherichia fergusonii Becca 0.73 EFB2_01400 Uracil phosphoribosyltransferase 0.57 EFB2_03910 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 86
Escherichia coli ECRC101 0.73 MCAODC_12345 upp uracil phosphoribosyltransferase 0.57 MCAODC_00915 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Escherichia coli ECOR27 0.73 NOLOHH_13465 upp uracil phosphoribosyltransferase 0.58 NOLOHH_02745 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_01228 Uracil phosphoribosyltransferase 0.58 OHPLBJKB_03527 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 73
Escherichia coli ECRC62 0.73 BNILDI_12275 upp uracil phosphoribosyltransferase 0.58 BNILDI_08925 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Escherichia coli ECRC99 0.73 KEDOAH_06405 upp uracil phosphoribosyltransferase 0.57 KEDOAH_17755 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Escherichia coli ECOR38 0.73 HEPCGN_20980 upp uracil phosphoribosyltransferase 0.57 HEPCGN_08375 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 85
Escherichia coli ECRC98 0.73 JDDGAC_25760 upp uracil phosphoribosyltransferase 0.57 JDDGAC_13995 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Escherichia coli ECRC101 0.73 OKFHMN_21815 upp uracil phosphoribosyltransferase 0.57 OKFHMN_10400 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Serratia liquefaciens MT49 0.73 IAI46_18880 uracil phosphoribosyltransferase 0.55 IAI46_21240 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 86
Shewanella amazonensis SB2B 0.73 Sama_2096 upp uracil phosphoribosyltransferase (RefSeq) 0.58 Sama_0776 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) — —
Dickeya dianthicola 67-19 0.73 HGI48_RS06075 uracil phosphoribosyltransferase 0.56 HGI48_RS16070 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS06425 uracil phosphoribosyltransferase 0.56 DZA65_RS17155 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 75
Dickeya dadantii 3937 0.72 DDA3937_RS06030 uracil phosphoribosyltransferase 0.56 DDA3937_RS15955 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 74
Pantoea sp. MT58 0.72 IAI47_05185 uracil phosphoribosyltransferase 0.55 IAI47_15655 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 76
Pectobacterium carotovorum WPP14 0.72 HER17_RS15460 uracil phosphoribosyltransferase 0.55 HER17_RS05560 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 75
Rahnella sp. WP5 0.71 EX31_RS22700 uracil phosphoribosyltransferase 0.56 EX31_RS03280 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 89
Erwinia tracheiphila SCR3 0.71 LU632_RS08280 upp uracil phosphoribosyltransferase 0.56 LU632_RS20100 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 74
Shewanella oneidensis MR-1 0.70 SO2759 upp uracil phosphoribosyltransferase (NCBI ptt file) 0.58 SO0870 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_11345 uracil phosphoribosyltransferase 0.55 CSW01_03135 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Shewanella sp. ANA-3 0.70 Shewana3_2544 upp uracil phosphoribosyltransferase (RefSeq) 0.57 Shewana3_3408 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.70 Shew_1514 upp uracil phosphoribosyltransferase (RefSeq) 0.57 Shew_3133 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) — —
Rhodanobacter denitrificans MT42 0.70 LRK55_RS02920 uracil phosphoribosyltransferase 0.49 LRK55_RS14830 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.70 LRK54_RS03170 uracil phosphoribosyltransferase 0.48 LRK54_RS15115 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS09615 uracil phosphoribosyltransferase 0.46 ABZR86_RS00815 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Dechlorosoma suillum PS 0.69 Dsui_2333 uracil phosphoribosyltransferase 0.52 Dsui_1471 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_10040 upp uracil phosphoribosyltransferase 0.47 OKGIIK_03885 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 52
Alteromonas macleodii MIT1002 0.67 MIT1002_02893 Uracil phosphoribosyltransferase 0.57 MIT1002_03694 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.65 DvMF_0911 uracil phosphoribosyltransferase (RefSeq) 0.41 DvMF_2949 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) low > 51
Lysobacter sp. OAE881 0.65 ABIE51_RS15050 uracil phosphoribosyltransferase 0.52 ABIE51_RS08025 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.2160.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.50 Xcc-8004.3052.1 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF1179 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.48 GFF1218 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) — —
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS30815 uracil phosphoribosyltransferase 0.46 RR42_RS17250 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Acidovorax sp. GW101-3H11 0.51 Ac3H11_2428 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.48 Ac3H11_3839 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) low > 79
Variovorax sp. OAS795 0.50 ABID97_RS16850 uracil phosphoribosyltransferase 0.45 ABID97_RS07435 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 91
Variovorax sp. SCN45 0.50 GFF324 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.45 GFF2579 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) low > 127
Ralstonia solanacearum GMI1000 0.49 RS_RS10980 uracil phosphoribosyltransferase 0.56 RS_RS13180 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Ralstonia solanacearum UW163 0.48 UW163_RS10140 uracil phosphoribosyltransferase 0.58 UW163_RS08310 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS03530 uracil phosphoribosyltransferase 0.58 RALBFv3_RS05315 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS24390 uracil phosphoribosyltransferase 0.56 QEN71_RS26480 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 153
Ralstonia solanacearum PSI07 0.48 RPSI07_RS13695 uracil phosphoribosyltransferase 0.57 RPSI07_RS11985 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS06415 uracil phosphoribosyltransferase 0.54 BPHYT_RS03605 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS15395 uracil phosphoribosyltransferase 0.53 ABZR87_RS00950 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Paraburkholderia graminis OAS925 0.46 ABIE53_001547 uracil phosphoribosyltransferase 0.56 ABIE53_000867 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04523 uracil phosphoribosyltransferase 0.56 H281DRAFT_04703 ketopantoate hydroxymethyltransferase — —
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS03500 uracil phosphoribosyltransferase 0.57 HSERO_RS03085 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 78
Mycobacterium tuberculosis H37Rv 0.38 Rv3309c Probable uracil phosphoribosyltransferase Upp (UMP pyrophosphorylase) (uprtase) (UMP diphosphorylase) 0.37 Rv2225 3-methyl-2-oxobutanoate hydroxymethyltransferase PanB — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_14760 uracil phosphoribosyltransferase 0.40 CA264_20605 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Bacteroides ovatus ATCC 8483 0.23 BACOVA_02012 putative uracil phosphoribosyltransferase 0.33 BACOVA_02402 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.23 BT2791 uracil phosphoribosyltransferase (NCBI ptt file) 0.32 BT0698 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI ptt file) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_0597 Uracil phosphoribosyltransferase 0.39 Echvi_1836 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS10070 uracil phosphoribosyltransferase 0.38 HMPREF1058_RS17810 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS06680 uracil phosphoribosyltransferase 0.38 ABI39_RS14025 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Parabacteroides merdae CL09T00C40 0.23 HMPREF1078_RS00655 uracil phosphoribosyltransferase 0.34 HMPREF1078_RS09715 3-methyl-2-oxobutanoate hydroxymethyltransferase low > 61
Bacteroides stercoris CC31F 0.22 HMPREF1181_RS01165 uracil phosphoribosyltransferase 0.36 HMPREF1181_RS16225 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS19460 uracil phosphoribosyltransferase 0.41 CA265_RS15235 3-methyl-2-oxobutanoate hydroxymethyltransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS00770 uracil phosphoribosyltransferase 0.40 ABZR88_RS17835 3-methyl-2-oxobutanoate hydroxymethyltransferase — —

Not shown: 18 genomes with orthologs for PS417_04435 only; 1 genomes with orthologs for PS417_23910 only