Conservation of cofitness between GFF3853 and GFF4216 in Hydrogenophaga sp. GW460-11-11-14-LB1

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF3853 DNA-binding protein HU-beta 1.0 GFF4216 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.78 3
Variovorax sp. SCN45 0.86 GFF2853 DNA-binding protein HU-beta 0.71 GFF370 23S rRNA (uridine(2552)-2'-O)-methyltransferase (EC 2.1.1.166) low > 127
Variovorax sp. OAS795 0.86 ABID97_RS10665 HU family DNA-binding protein 0.72 ABID97_RS17050 RlmE family RNA methyltransferase — —
Acidovorax sp. GW101-3H11 0.85 Ac3H11_376 DNA-binding protein HU-beta 0.74 Ac3H11_441 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) low > 79
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS21970 HU family DNA-binding protein 0.57 QEN71_RS04800 RlmE family RNA methyltransferase — —
Burkholderia phytofirmans PsJN 0.80 BPHYT_RS09465 transcriptional regulator 0.57 BPHYT_RS14170 ribosomal RNA large subunit methyltransferase E — —
Paraburkholderia bryophila 376MFSha3.1 0.78 H281DRAFT_00899 bacterial nucleoid protein Hbs 0.60 H281DRAFT_04407 23S rRNA Um-2552 2'-O-methyltransferase — —
Paraburkholderia graminis OAS925 0.78 ABIE53_002118 DNA-binding protein HU-beta 0.60 ABIE53_003000 23S rRNA (uridine2552-2'-O)-methyltransferase — —
Dechlorosoma suillum PS 0.78 Dsui_2199 bacterial nucleoid DNA-binding protein 0.45 Dsui_3060 23S rRNA methylase low > 51
Herbaspirillum seropedicae SmR1 0.74 HSERO_RS12900 transcriptional regulator HU subunit alpha 0.53 HSERO_RS06940 23S rRNA methyltransferase — —
Castellaniella sp019104865 MT123 0.70 ABCV34_RS06640 HU family DNA-binding protein 0.54 ABCV34_RS15550 RlmE family RNA methyltransferase — —
Ralstonia solanacearum UW163 0.68 UW163_RS14645 HU family DNA-binding protein 0.57 UW163_RS15480 RlmE family RNA methyltransferase — —
Ralstonia solanacearum PSI07 0.68 RPSI07_RS16140 HU family DNA-binding protein 0.57 RPSI07_RS15275 RlmE family RNA methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS01335 HU family DNA-binding protein 0.57 RALBFv3_RS02170 RlmE family RNA methyltransferase — —
Ralstonia solanacearum GMI1000 0.68 RS_RS08660 HU family DNA-binding protein 0.57 RS_RS07650 ribosomal RNA large subunit methyltransferase E — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1039 Bacterial nucleoid DNA-binding protein 0.38 B158DRAFT_0634 23S rRNA Um-2552 2'-O-methyltransferase (EC 2.1.1.166) low > 40
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF4356 DNA-binding protein HU-beta 0.36 GFF2920 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552 — —
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_09600 DNA-binding protein HU-beta 0.38 CSW01_03340 ribosomal RNA large subunit methyltransferase E low > 62
Serratia liquefaciens MT49 0.66 IAI46_05025 DNA-binding protein HU-beta 0.36 IAI46_01890 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS12780 HU family DNA-binding protein 0.57 ABZR87_RS14120 RlmE family RNA methyltransferase — —
Shewanella oneidensis MR-1 0.66 SO1797 DNA-binding protein, HU family (NCBI ptt file) 0.39 SO1196 rrmJ ribosomal RNA large subunit methyltransferase J (NCBI ptt file) — —
Escherichia coli ECOR27 0.66 NOLOHH_01250 hupB DNA-binding protein HU-beta 0.36 NOLOHH_09855 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Escherichia coli ECRC101 0.66 MCAODC_27540 hupB DNA-binding protein HU-beta 0.36 MCAODC_08575 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Escherichia coli ECOR38 0.66 HEPCGN_06930 hupB DNA-binding protein HU-beta 0.36 HEPCGN_16930 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Escherichia coli ECRC102 0.66 NIAGMN_06370 hupB DNA-binding protein HU-beta 0.36 NIAGMN_15815 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Escherichia coli Nissle 1917 0.66 ECOLIN_RS02640 nucleoid-associated protein HU-beta 0.36 ECOLIN_RS18310 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Escherichia coli ECRC99 0.66 KEDOAH_19650 hupB DNA-binding protein HU-beta 0.36 KEDOAH_10095 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Escherichia coli ECRC98 0.66 JDDGAC_11970 hupB DNA-binding protein HU-beta 0.36 JDDGAC_21680 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Shewanella sp. ANA-3 0.66 Shewana3_2658 histone family protein DNA-binding protein (RefSeq) 0.39 Shewana3_1022 rrmJ 23S rRNA methyltransferase J (RefSeq) — —
Escherichia coli ECRC62 0.66 BNILDI_22665 hupB DNA-binding protein HU-beta 0.36 BNILDI_01680 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Escherichia coli ECRC101 0.66 OKFHMN_08315 hupB DNA-binding protein HU-beta 0.36 OKFHMN_18055 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03233 DNA-binding protein HU-beta 0.36 OHPLBJKB_00521 Ribosomal RNA large subunit methyltransferase E — —
Shewanella amazonensis SB2B 0.65 Sama_1227 HU family DNA-binding protein (RefSeq) 0.39 Sama_0953 rrmJ 23S rRNA methyltransferase J (RefSeq) — —
Escherichia coli BW25113 0.65 b0440 hupB HU, DNA-binding transcriptional regulator, beta subunit (NCBI) 0.36 b3179 rlmE 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent (NCBI) — —
Escherichia fergusonii Becca 0.65 EFB2_03617 DNA-binding protein HU-beta 0.36 EFB2_00644 Ribosomal RNA large subunit methyltransferase E — —
Escherichia coli BL21 0.65 ECD_00392 HU, DNA-binding transcriptional regulator, beta subunit 0.36 ECD_03044 23S rRNA U2552 2'-O-ribose methyltransferase, SAM-dependent — —
Shewanella loihica PV-4 0.65 Shew_2505 histone family protein DNA-binding protein (RefSeq) 0.40 Shew_2835 rrmJ 23S rRNA methyltransferase J (RefSeq) — —
Enterobacter asburiae PDN3 0.64 EX28DRAFT_2530 Bacterial nucleoid DNA-binding protein 0.35 EX28DRAFT_3230 cell division protein FtsJ — —
Klebsiella michiganensis M5al 0.64 BWI76_RS06540 DNA-binding protein HU-beta 0.36 BWI76_RS25145 23S rRNA (uridine(2552)-2'-O)-methyltransferase — —
Enterobacter sp. TBS_079 0.64 MPMX20_01031 DNA-binding protein HU-beta 0.36 MPMX20_04083 Ribosomal RNA large subunit methyltransferase E — —
Marinobacter adhaerens HP15 0.64 HP15_2182 histone-like bacterial DNA-binding protein 0.40 HP15_3615 ribosomal RNA large subunit methyltransferase J — —
Rahnella sp. WP5 0.64 EX31_RS22260 DNA-binding protein HU-beta 0.36 EX31_RS08585 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Dickeya dianthicola 67-19 0.62 HGI48_RS05700 DNA-binding protein HU-beta 0.38 HGI48_RS03195 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Pectobacterium carotovorum WPP14 0.62 HER17_RS15835 DNA-binding protein HU-beta 0.36 HER17_RS18320 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Alteromonas macleodii MIT1002 0.62 MIT1002_02756 hypothetical protein 0.39 MIT1002_01864 Ribosomal RNA large subunit methyltransferase E — —
Dickeya dianthicola ME23 0.62 DZA65_RS06025 DNA-binding protein HU-beta 0.39 DZA65_RS03190 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Dickeya dadantii 3937 0.62 DDA3937_RS05655 DNA-binding protein HU-beta 0.38 DDA3937_RS03025 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Erwinia tracheiphila SCR3 0.61 LU632_RS18330 hupB DNA-binding protein HU-beta 0.34 LU632_RS21110 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE low > 74
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_01735 DNA-binding protein HU 0.40 AO356_07460 23S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_20190 DNA-binding protein HU 0.41 AO353_05610 23S rRNA methyltransferase — —
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_2555 DNA-binding protein HU-beta 0.42 PfGW456L13_5095 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) — —
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS19155 HU family DNA-binding protein 0.39 PFLU_RS25860 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS19155 HU family DNA-binding protein 0.39 PFLU_RS25860 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Pseudomonas sp. S08-1 0.61 OH686_03630 DNA-binding protein HU-beta 0.40 OH686_23800 23S rRNA (uridine(2552)-2'-O)-methyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_2215 DNA-binding protein HU-beta 0.40 Pf6N2E2_3360 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) — —
Pseudomonas simiae WCS417 0.61 PS417_17220 transcriptional regulator HU subunit alpha 0.39 PS417_24020 23S rRNA methyltransferase — —
Pantoea sp. MT58 0.61 IAI47_14640 DNA-binding protein HU-beta 0.36 IAI47_17070 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_3948 DNA-binding protein HU-beta 0.41 Pf1N1B4_1168 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) — —
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.39 Psyr_4188 23S rRNA Um-2552 2'-O-methyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.39 Psyr_4188 23S rRNA Um-2552 2'-O-methyltransferase — —
Pseudomonas stutzeri RCH2 0.60 Psest_2284 Bacterial nucleoid DNA-binding protein 0.38 Psest_1346 23S rRNA methylase — —
Magnetospirillum magneticum AMB-1 0.59 AMB_RS10215 HU family DNA-binding protein 0.32 AMB_RS19140 23S rRNA methyltransferase — —
Pseudomonas putida KT2440 0.59 PP_2303 DNA binding regulator, beta subunit B 0.41 PP_4719 Ribosomal RNA large subunit methyltransferase E — —
Acinetobacter radioresistens SK82 0.59 MPMX26_01331 DNA-binding protein HU-beta 0.43 MPMX26_00771 Ribosomal RNA large subunit methyltransferase E — —
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS16740 HU family DNA-binding protein 0.42 LRK54_RS16680 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Rhodanobacter denitrificans MT42 0.59 LRK55_RS16465 HU family DNA-binding protein 0.42 LRK55_RS16405 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_08025 himA integration host factor subunit alpha 0.42 OKGIIK_08085 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS07315 HU family DNA-binding protein 0.44 ABZR86_RS06565 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Azospirillum sp. SherDot2 0.59 MPMX19_01544 DNA-binding protein HU 0.36 MPMX19_01691 Ribosomal RNA large subunit methyltransferase E — —
Lysobacter sp. OAE881 0.58 ABIE51_RS14140 HU family DNA-binding protein 0.38 ABIE51_RS06520 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE — —
Desulfovibrio vulgaris Miyazaki F 0.57 DvMF_0500 histone family protein DNA-binding protein (RefSeq) 0.24 DvMF_3200 ribosomal RNA methyltransferase RrmJ/FtsJ (RefSeq) low > 51
Sinorhizobium meliloti 1021 0.57 SMc01906 histone-like protein 0.32 SMc00811 cell division protein — —
Desulfovibrio vulgaris Hildenborough JW710 0.56 DVU1795 hup-3 DNA-binding protein HU (TIGR) 0.25 DVU2260 rrmJ ribosomal RNA large subunit methyltransferase J (TIGR) — —
Azospirillum brasilense Sp245 0.56 AZOBR_RS07150 transcriptional regulator 0.34 AZOBR_RS16115 23S rRNA methyltransferase — —
Rhodospirillum rubrum S1H 0.55 Rru_A1553 Histone-like DNA-binding protein (NCBI) 0.30 Rru_A0245 Ribosomal RNA methyltransferase RrmJ/FtsJ (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.54 Ga0059261_0103 Bacterial nucleoid DNA-binding protein 0.34 Ga0059261_2482 23S rRNA methylase — —
Agrobacterium fabrum C58 0.50 Atu1262 histone-like protein 0.30 Atu0620 cell division protein — —
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS20390 DNA-binding protein 0.57 RR42_RS13490 ribosomal RNA large subunit methyltransferase E — —
Rhizobium sp. OAE497 0.50 ABIE40_RS07105 DNA-binding protein HupB 0.33 ABIE40_RS03440 RlmE family RNA methyltransferase — —
Pseudomonas sp. RS175 0.45 PFR28_04473 DNA-binding protein HU-beta 0.40 PFR28_00081 Ribosomal RNA large subunit methyltransferase E — —
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS16005 HU family DNA-binding protein 0.31 A4249_RS03015 RlmE family RNA methyltransferase — —
Bosea sp. OAE506 0.35 ABIE41_RS21840 HU family DNA-binding protein 0.30 ABIE41_RS15205 RlmE family RNA methyltransferase — —

Not shown: 6 genomes with orthologs for GFF3853 only; 6 genomes with orthologs for GFF4216 only