Conservation of cofitness between Psest_0310 and Psest_3118 in Pseudomonas stutzeri RCH2

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0310 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 1.0 Psest_3118 endonuclease III 0.34 18
Pseudomonas sp. S08-1 0.84 OH686_16050 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.91 OH686_03910 endonuclease III low > 80
Pseudomonas putida KT2440 0.79 PP_1385 Probable efflux pump membrane transporter TtgB 0.87 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites low > 96
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_2824 RND efflux system, inner membrane transporter CmeB 0.88 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) low > 103
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_04880 multidrug transporter 0.88 AO356_18345 endonuclease III low > 104
Pseudomonas fluorescens FW300-N2E3 0.78 AO353_17295 multidrug transporter 0.88 AO353_04085 endonuclease III low > 101
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_3246 RND efflux system, inner membrane transporter CmeB 0.88 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) low > 87
Pseudomonas sp. RS175 0.77 PFR28_00631 putative efflux pump membrane transporter TtgB 0.88 PFR28_03349 Endonuclease III low > 88
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_4581 RND efflux system, inner membrane transporter CmeB 0.88 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) low > 87
Pseudomonas syringae pv. syringae B728a 0.77 Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 0.86 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.77 Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 0.86 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase — —
Pseudomonas simiae WCS417 0.75 PS417_06770 multidrug transporter 0.87 PS417_05655 endonuclease III low > 88
Pseudomonas fluorescens SBW25 0.75 PFLU_RS06805 efflux RND transporter permease subunit 0.87 PFLU_RS05740 endonuclease III low > 109
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS06805 efflux RND transporter permease subunit 0.87 PFLU_RS05740 endonuclease III low > 109
Serratia liquefaciens MT49 0.66 IAI46_16735 efflux RND transporter permease subunit 0.70 IAI46_11455 endonuclease III low > 86
Erwinia tracheiphila SCR3 0.65 LU632_RS18185 efflux RND transporter permease subunit 0.72 LU632_RS11305 nth endonuclease III — —
Rahnella sp. WP5 0.65 EX31_RS22470 multidrug efflux RND transporter permease subunit 0.71 EX31_RS06590 endonuclease III low > 89
Klebsiella michiganensis M5al 0.65 BWI76_RS06775 multidrug efflux RND transporter permease subunit 0.70 BWI76_RS16385 endonuclease III — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF4379 RND efflux system, inner membrane transporter CmeB 0.70 GFF3641 Endonuclease III (EC 4.2.99.18) low > 78
Pantoea sp. MT58 0.65 IAI47_14515 multidrug efflux RND transporter permease subunit 0.71 IAI47_10475 endonuclease III low > 76
Escherichia fergusonii Becca 0.65 EFB2_03596 Multidrug efflux pump subunit AcrB 0.70 EFB2_02359 Endonuclease III low > 86
Escherichia coli ECOR27 0.65 NOLOHH_01140 acrB efflux RND transporter permease AcrB 0.70 NOLOHH_18045 nth endonuclease III — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_2496 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.70 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 76
Escherichia coli ECRC62 0.65 BNILDI_22555 acrB efflux RND transporter permease AcrB 0.70 BNILDI_16835 nth endonuclease III — —
Escherichia coli Nissle 1917 0.65 ECOLIN_RS02750 efflux RND transporter permease AcrB 0.70 ECOLIN_RS09110 endonuclease III — —
Escherichia coli BW25113 0.65 b0462 acrB multidrug efflux system protein (NCBI) 0.70 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03212 Multidrug efflux pump subunit AcrB 0.70 OHPLBJKB_02093 Endonuclease III low > 73
Escherichia coli ECOR38 0.65 HEPCGN_06820 acrB efflux RND transporter permease AcrB 0.70 HEPCGN_05910 nth endonuclease III low > 85
Escherichia coli BL21 0.65 ECD_00413 multidrug efflux system protein 0.70 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) — —
Escherichia coli ECRC101 0.65 MCAODC_27430 acrB efflux RND transporter permease AcrB 0.69 MCAODC_17885 nth endonuclease III — —
Escherichia coli ECRC99 0.65 KEDOAH_19760 acrB efflux RND transporter permease AcrB 0.69 KEDOAH_00580 nth endonuclease III — —
Escherichia coli ECRC102 0.65 NIAGMN_06260 acrB efflux RND transporter permease AcrB 0.69 NIAGMN_00540 nth endonuclease III — —
Escherichia coli ECRC101 0.65 OKFHMN_08205 acrB efflux RND transporter permease AcrB 0.69 OKFHMN_27525 nth endonuclease III — —
Enterobacter sp. TBS_079 0.65 MPMX20_01064 Multidrug efflux pump subunit AcrB 0.71 MPMX20_02005 Endonuclease III low > 85
Azospirillum brasilense Sp245 0.65 AZOBR_RS30185 multidrug transporter 0.59 AZOBR_RS01565 endonuclease III 0.27 35
Shewanella sp. ANA-3 0.64 Shewana3_4045 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.68 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) low > 73
Azospirillum sp. SherDot2 0.64 MPMX19_05884 Multidrug efflux pump subunit AcrB 0.60 MPMX19_02500 Endonuclease III low > 112
Shewanella oneidensis MR-1 0.64 SO4692 AcrB/AcrD/AcrF family protein (NCBI ptt file) 0.69 SO2514 nth endonuclease III (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.64 Sama_3554 AcrB/AcrD/AcrF family protein (RefSeq) 0.68 Sama_1836 endonuclease III (RefSeq) low > 62
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS02525 efflux RND transporter permease subunit 0.69 QEN71_RS24560 endonuclease III low > 153
Dickeya dadantii 3937 0.64 DDA3937_RS05735 multidrug efflux RND transporter permease subunit 0.68 DDA3937_RS10545 endonuclease III low > 74
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_04170 multidrug efflux pump 0.67 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III low > 103
Pectobacterium carotovorum WPP14 0.63 HER17_RS15740 multidrug efflux RND transporter permease subunit 0.71 HER17_RS10860 endonuclease III low > 75
Paraburkholderia graminis OAS925 0.63 ABIE53_003408 multidrug efflux pump 0.67 ABIE53_001423 endonuclease-3 low > 113
Shewanella loihica PV-4 0.63 Shew_0032 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.68 Shew_2072 endonuclease III (RefSeq) low > 60
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS16170 multidrug efflux RND transporter permease subunit 0.67 BPHYT_RS06080 endonuclease IV — —
Ralstonia solanacearum PSI07 0.63 RPSI07_RS03390 multidrug efflux RND transporter permease subunit 0.71 RPSI07_RS19265 endonuclease III low > 81
Dickeya dianthicola ME23 0.63 DZA65_RS06115 multidrug efflux RND transporter permease subunit 0.69 DZA65_RS11025 endonuclease III low > 75
Dickeya dianthicola 67-19 0.63 HGI48_RS05790 multidrug efflux RND transporter permease subunit 0.69 HGI48_RS10545 endonuclease III low > 71
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS32420 multidrug efflux RND transporter permease subunit 0.72 RR42_RS05970 endonuclease III low > 128
Ralstonia solanacearum UW163 0.62 UW163_RS19380 multidrug efflux RND transporter permease subunit 0.69 UW163_RS11660 endonuclease III — —
Ralstonia solanacearum GMI1000 0.62 RS_RS21030 multidrug efflux RND transporter permease subunit 0.70 RS_RS04975 endonuclease III low > 80
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS19795 multidrug efflux RND transporter permease subunit 0.69 RALBFv3_RS14195 endonuclease III low > 76
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.1794.1 RND efflux system, inner membrane transporter CmeB 0.68 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) low > 74
Rhodospirillum rubrum S1H 0.62 Rru_A2051 Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) 0.57 Rru_A0153 Endonuclease III/Nth (NCBI) low > 58
Caulobacter crescentus NA1000 0.61 CCNA_00850 cation/multidrug efflux pump acrB2 0.53 CCNA_03847 endonuclease III low > 66
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_00850 cation/multidrug efflux pump acrB2 0.53 CCNA_03847 endonuclease III low > 67
Dyella japonica UNC79MFTsu3.2 0.61 ABZR86_RS18285 efflux RND transporter permease subunit 0.68 ABZR86_RS08185 endonuclease III low > 74
Herbaspirillum seropedicae SmR1 0.61 HSERO_RS06815 multidrug transporter 0.75 HSERO_RS08070 endonuclease IV low > 78
Bosea sp. OAE506 0.60 ABIE41_RS01595 efflux RND transporter permease subunit 0.59 ABIE41_RS03410 endonuclease III low > 77
Escherichia coli ECRC98 0.60 JDDGAC_25915 acrD multidrug efflux RND transporter permease AcrD 0.69 JDDGAC_02115 nth endonuclease III — —
Acinetobacter radioresistens SK82 0.59 MPMX26_00689 Multidrug resistance protein MexB 0.70 MPMX26_02306 Endonuclease III low > 36
Variovorax sp. SCN45 0.59 GFF5990 RND efflux system, inner membrane transporter 0.67 GFF418 Endonuclease III (EC 4.2.99.18) 0.40 48
Alteromonas macleodii MIT1002 0.56 MIT1002_00135 Multidrug-efflux transporter MexB 0.33 MIT1002_01251 Endonuclease III low > 70
Variovorax sp. OAS795 0.53 ABID97_RS00325 efflux RND transporter permease subunit 0.65 ABID97_RS17315 endonuclease III low > 91
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS05315 efflux RND transporter permease subunit 0.69 ABZR87_RS09915 endonuclease III low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF3840 RND efflux system, inner membrane transporter CmeB 0.65 GFF4003 Endonuclease III (EC 4.2.99.18) low > 90
Acidovorax sp. GW101-3H11 0.51 Ac3H11_4448 RND efflux system, inner membrane transporter CmeB 0.65 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) low > 79
Sphingomonas koreensis DSMZ 15582 0.51 Ga0059261_0559 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.57 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 68
Castellaniella sp019104865 MT123 0.48 ABCV34_RS04225 efflux RND transporter permease subunit 0.69 ABCV34_RS08465 endonuclease III low > 48
Lysobacter sp. OAE881 0.47 ABIE51_RS17980 multidrug efflux RND transporter permease subunit 0.65 ABIE51_RS07560 endonuclease III low > 62
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_0733 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.78 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) low > 40
Dechlorosoma suillum PS 0.46 Dsui_3182 hydrophobe/amphiphile efflux-1 (HAE1) family transporter 0.70 Dsui_2985 endonuclease III — —
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_09170 Efflux pump membrane transporter 0.68 OKGIIK_04675 nth endonuclease III low > 52
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS02100 multidrug efflux RND transporter permease subunit 0.69 LRK54_RS01850 endonuclease III low > 59
Rhodanobacter denitrificans MT42 0.45 LRK55_RS01875 multidrug efflux RND transporter permease subunit 0.69 LRK55_RS01640 endonuclease III low > 63
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS12545 efflux RND transporter permease subunit 0.42 ABZR88_RS16725 endonuclease III low > 71
Parabacteroides merdae CL09T00C40 0.35 HMPREF1078_RS08425 efflux RND transporter permease subunit 0.41 HMPREF1078_RS09755 endonuclease III low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.33 CA265_RS23010 hydrophobe/amphiphile efflux-1 family RND transporter 0.40 CA265_RS00605 endonuclease III low > 88
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_2369 acrF Hydrophobe/amphiphile efflux-1 HAE1 0.31 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III low > 38

Not shown: 5 genomes with orthologs for Psest_0310 only; 16 genomes with orthologs for Psest_3118 only