Conservation of cofitness between HP15_2306 and HP15_250 in Marinobacter adhaerens HP15

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_2306 uracil phosphoribosyltransferase 1.0 HP15_250 site-specific tyrosine recombinase XerC 0.32 20
Pseudomonas sp. S08-1 0.80 OH686_17985 uracil phosphoribosyltransferase 0.46 OH686_13785 tyrosine recombinase XerC low > 80
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_0969 uracil phosphoribosyltransferase 0.46 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_0969 uracil phosphoribosyltransferase 0.46 Psyr_0185 tyrosine recombinase XerC subunit 0.34 57
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_14855 uracil phosphoribosyltransferase 0.44 AO353_09050 recombinase XerC low > 101
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_2934 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.44 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_1597 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.45 PfGW456L13_842 Tyrosine recombinase XerC low > 87
Pseudomonas simiae WCS417 0.79 PS417_04435 uracil phosphoribosyltransferase 0.40 PS417_27595 recombinase XerC low > 88
Pseudomonas stutzeri RCH2 0.79 Psest_1120 uracil phosphoribosyltransferase 0.46 Psest_3767 tyrosine recombinase XerC low > 67
Pseudomonas fluorescens FW300-N2C3 0.79 AO356_16565 uracil phosphoribosyltransferase 0.45 AO356_12725 recombinase XerC low > 104
Pseudomonas fluorescens SBW25-INTG 0.79 PFLU_RS04485 uracil phosphoribosyltransferase 0.40 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas fluorescens SBW25 0.79 PFLU_RS04485 uracil phosphoribosyltransferase 0.40 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas putida KT2440 0.79 PP_0746 Uracil phosphoribosyltransferase 0.44 PP_5230 Tyrosine recombinase XerC low > 96
Pseudomonas fluorescens FW300-N2E2 0.79 Pf6N2E2_5235 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.46 Pf6N2E2_4416 Tyrosine recombinase XerC low > 103
Pseudomonas sp. RS175 0.78 PFR28_03641 Uracil phosphoribosyltransferase 0.45 PFR28_04378 Tyrosine recombinase XerC low > 88
Castellaniella sp019104865 MT123 0.77 ABCV34_RS15380 uracil phosphoribosyltransferase 0.35 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Shewanella oneidensis MR-1 0.72 SO2759 upp uracil phosphoribosyltransferase (NCBI ptt file) 0.44 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.71 Shewana3_2544 upp uracil phosphoribosyltransferase (RefSeq) 0.45 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01228 Uracil phosphoribosyltransferase 0.46 OHPLBJKB_04239 Tyrosine recombinase XerC low > 73
Escherichia coli ECOR38 0.71 HEPCGN_20980 upp uracil phosphoribosyltransferase 0.46 HEPCGN_13125 xerC tyrosine recombinase XerC low > 85
Escherichia fergusonii Becca 0.71 EFB2_01400 Uracil phosphoribosyltransferase 0.45 EFB2_04826 Tyrosine recombinase XerC low > 86
Escherichia coli ECRC62 0.71 BNILDI_12275 upp uracil phosphoribosyltransferase 0.46 BNILDI_04985 xerC tyrosine recombinase XerC — —
Escherichia coli BL21 0.71 ECD_02390 uracil phosphoribosyltransferase 0.46 ECD_03687 site-specific tyrosine recombinase low > 60
Escherichia coli Nissle 1917 0.71 ECOLIN_RS14185 uracil phosphoribosyltransferase 0.46 ECOLIN_RS21875 tyrosine recombinase XerC low > 52
Shewanella amazonensis SB2B 0.71 Sama_2096 upp uracil phosphoribosyltransferase (RefSeq) 0.48 Sama_3247 integrase/recombinase XerC (RefSeq) low > 62
Escherichia coli ECRC98 0.71 JDDGAC_25760 upp uracil phosphoribosyltransferase 0.46 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli BW25113 0.71 b2498 upp uracil phosphoribosyltransferase (VIMSS) 0.46 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) low > 76
Escherichia coli ECRC101 0.71 MCAODC_12345 upp uracil phosphoribosyltransferase 0.46 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC99 0.71 KEDOAH_06405 upp uracil phosphoribosyltransferase 0.46 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR27 0.71 NOLOHH_13465 upp uracil phosphoribosyltransferase 0.46 NOLOHH_06550 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.71 OKFHMN_21815 upp uracil phosphoribosyltransferase 0.46 OKFHMN_14420 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC102 0.71 NIAGMN_19585 upp uracil phosphoribosyltransferase 0.46 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Klebsiella michiganensis M5al 0.71 BWI76_RS20945 uracil phosphoribosyltransferase 0.46 BWI76_RS01210 tyrosine recombinase XerC low > 92
Shewanella loihica PV-4 0.71 Shew_1514 upp uracil phosphoribosyltransferase (RefSeq) 0.46 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_11345 uracil phosphoribosyltransferase 0.45 CSW01_00650 tyrosine recombinase XerC low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF2171 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.46 GFF239 Tyrosine recombinase XerC — —
Enterobacter sp. TBS_079 0.71 MPMX20_03352 Uracil phosphoribosyltransferase 0.44 MPMX20_04465 Tyrosine recombinase XerC 0.24 39
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0170 uracil phosphoribosyltransferase (EC 2.4.2.9) 0.46 EX28DRAFT_4480 tyrosine recombinase XerC — —
Acinetobacter radioresistens SK82 0.70 MPMX26_02542 Uracil phosphoribosyltransferase 0.35 MPMX26_02230 Tyrosine recombinase XerC — —
Erwinia tracheiphila SCR3 0.70 LU632_RS08280 upp uracil phosphoribosyltransferase 0.44 LU632_RS24135 xerC tyrosine recombinase XerC — —
Pantoea sp. MT58 0.70 IAI47_05185 uracil phosphoribosyltransferase 0.45 IAI47_18400 tyrosine recombinase XerC low > 76
Rhodanobacter denitrificans MT42 0.70 LRK55_RS02920 uracil phosphoribosyltransferase 0.41 LRK55_RS08300 tyrosine recombinase XerC low > 63
Rhodanobacter denitrificans FW104-10B01 0.70 LRK54_RS03170 uracil phosphoribosyltransferase 0.39 LRK54_RS08535 tyrosine recombinase XerC low > 59
Serratia liquefaciens MT49 0.70 IAI46_18880 uracil phosphoribosyltransferase 0.45 IAI46_00725 tyrosine recombinase XerC low > 86
Pectobacterium carotovorum WPP14 0.70 HER17_RS15460 uracil phosphoribosyltransferase 0.45 HER17_RS01350 tyrosine recombinase XerC low > 75
Rahnella sp. WP5 0.70 EX31_RS22700 uracil phosphoribosyltransferase 0.45 EX31_RS15165 tyrosine recombinase XerC low > 89
Dickeya dianthicola 67-19 0.70 HGI48_RS06075 uracil phosphoribosyltransferase 0.47 HGI48_RS20045 tyrosine recombinase XerC low > 71
Dickeya dadantii 3937 0.69 DDA3937_RS06030 uracil phosphoribosyltransferase 0.47 DDA3937_RS19890 tyrosine recombinase XerC — —
Dickeya dianthicola ME23 0.69 DZA65_RS06425 uracil phosphoribosyltransferase 0.46 DZA65_RS21090 tyrosine recombinase XerC low > 75
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS09615 uracil phosphoribosyltransferase 0.43 ABZR86_RS15025 tyrosine recombinase XerC low > 74
Dechlorosoma suillum PS 0.68 Dsui_2333 uracil phosphoribosyltransferase 0.46 Dsui_0651 tyrosine recombinase XerC low > 51
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_10040 upp uracil phosphoribosyltransferase 0.41 OKGIIK_15325 xerC tyrosine recombinase XerC — —
Desulfovibrio vulgaris Miyazaki F 0.67 DvMF_0911 uracil phosphoribosyltransferase (RefSeq) 0.25 DvMF_0767 integrase family protein (RefSeq) low > 51
Lysobacter sp. OAE881 0.66 ABIE51_RS15050 uracil phosphoribosyltransferase 0.41 ABIE51_RS03035 tyrosine recombinase XerC low > 62
Alteromonas macleodii MIT1002 0.66 MIT1002_02893 Uracil phosphoribosyltransferase 0.43 MIT1002_00157 Tyrosine recombinase XerC low > 70
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.2160.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.43 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Fusobacterium nucleatum SB010 0.51 HUW76_07615 uracil phosphoribosyltransferase 0.16 HUW76_06795 tyrosine-type recombinase/integrase low > 35
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF1179 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.39 GFF547 Tyrosine recombinase XerC low > 90
Variovorax sp. SCN45 0.49 GFF324 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.35 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Variovorax sp. OAS795 0.48 ABID97_RS16850 uracil phosphoribosyltransferase 0.35 ABID97_RS06150 tyrosine recombinase XerC low > 91
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_02351 uracil phosphoribosyltransferase 0.29 CCNA_03101 site-specific tyrosine recombinase XerD low > 67
Caulobacter crescentus NA1000 0.48 CCNA_02351 uracil phosphoribosyltransferase 0.29 CCNA_03101 site-specific tyrosine recombinase XerD low > 66
Acidovorax sp. GW101-3H11 0.48 Ac3H11_2428 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.37 Ac3H11_1995 Tyrosine recombinase XerC low > 79
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS30815 uracil phosphoribosyltransferase 0.36 RR42_RS00615 recombinase XerC low > 128
Ralstonia solanacearum GMI1000 0.45 RS_RS10980 uracil phosphoribosyltransferase 0.39 RS_RS00260 Tyrosine recombinase XerC 1 low > 80
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS03530 uracil phosphoribosyltransferase 0.39 RALBFv3_RS09675 tyrosine recombinase XerC low > 76
Ralstonia solanacearum UW163 0.44 UW163_RS10140 uracil phosphoribosyltransferase 0.39 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum PSI07 0.44 RPSI07_RS13695 uracil phosphoribosyltransferase 0.40 RPSI07_RS23690 tyrosine recombinase XerC low > 81
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS24390 uracil phosphoribosyltransferase 0.37 QEN71_RS00355 tyrosine recombinase XerC — —
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS03500 uracil phosphoribosyltransferase 0.36 HSERO_RS21475 recombinase XerC low > 78
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS15395 uracil phosphoribosyltransferase 0.40 ABZR87_RS05065 tyrosine recombinase XerC low > 80
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS06415 uracil phosphoribosyltransferase 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04523 uracil phosphoribosyltransferase 0.36 H281DRAFT_02202 integrase/recombinase XerC — —
Paraburkholderia graminis OAS925 0.42 ABIE53_001547 uracil phosphoribosyltransferase 0.36 ABIE53_000426 integrase/recombinase XerC — —
Mycobacterium tuberculosis H37Rv 0.36 Rv3309c Probable uracil phosphoribosyltransferase Upp (UMP pyrophosphorylase) (uprtase) (UMP diphosphorylase) 0.31 Rv1701 Probable integrase/recombinase low > 58
Pontibacter actiniarum KMM 6156, DSM 19842 0.25 CA264_14760 uracil phosphoribosyltransferase 0.30 CA264_19035 integrase — —
Methanococcus maripaludis JJ 0.23 MMJJ_RS01490 uracil phosphoribosyltransferase 0.12 MMJJ_RS03475 tyrosine-type recombinase/integrase low > 28
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS00770 uracil phosphoribosyltransferase 0.30 ABZR88_RS17800 tyrosine-type recombinase/integrase low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.20 CA265_RS19460 uracil phosphoribosyltransferase 0.32 CA265_RS02835 integrase low > 88

Not shown: 20 genomes with orthologs for HP15_2306 only; 3 genomes with orthologs for HP15_250 only