| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF1934 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 1.0 | GFF2221 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | 0.80 | 20 |
| Escherichia coli BW25113 | 0.97 | b2318 | truA | tRNA pseudouridine synthase A (NCBI) | 0.94 | b3869 | glnL | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.97 | ECD_02243 | | tRNA pseudouridine(38-40) synthase | 0.94 | ECD_03754 | | sensory histidine kinase in two-component regulatory system with GlnG | — | — |
| Escherichia coli ECOR27 | 0.97 | NOLOHH_14305 | truA | tRNA pseudouridine(38-40) synthase TruA | 0.93 | NOLOHH_06235 | glnL | nitrogen regulation protein NR(II) | low | > 57 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.97 | OHPLBJKB_01387 | | tRNA pseudouridine synthase A | 0.94 | OHPLBJKB_04183 | | Sensory histidine kinase/phosphatase NtrB | low | > 73 |
| Escherichia coli ECRC101 | 0.96 | OKFHMN_22670 | truA | aspartate-semialdehyde dehydrogenase | 0.94 | OKFHMN_14105 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli ECRC102 | 0.96 | NIAGMN_20445 | truA | aspartate-semialdehyde dehydrogenase | 0.94 | NIAGMN_11860 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli ECOR38 | 0.96 | HEPCGN_21875 | truA | aspartate-semialdehyde dehydrogenase | 0.93 | HEPCGN_12735 | glnL | nitrogen regulation protein NR(II) | low | > 85 |
| Escherichia coli ECRC98 | 0.96 | JDDGAC_26630 | truA | aspartate-semialdehyde dehydrogenase | 0.94 | JDDGAC_17730 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli Nissle 1917 | 0.96 | ECOLIN_RS13435 | | tRNA pseudouridine(38-40) synthase TruA | 0.93 | ECOLIN_RS22300 | | nitrogen regulation protein NR(II) | low | > 52 |
| Escherichia coli ECRC101 | 0.96 | MCAODC_13710 | truA | aspartate-semialdehyde dehydrogenase | 0.94 | MCAODC_04605 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli ECRC99 | 0.96 | KEDOAH_05525 | truA | aspartate-semialdehyde dehydrogenase | 0.94 | KEDOAH_14045 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli ECRC62 | 0.96 | BNILDI_13225 | truA | tRNA pseudouridine(38-40) synthase TruA | 0.94 | BNILDI_05295 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia fergusonii Becca | 0.96 | EFB2_01540 | | tRNA pseudouridine synthase A | 0.93 | EFB2_04747 | | Sensory histidine kinase/phosphatase NtrB | low | > 86 |
| Enterobacter sp. TBS_079 | 0.92 | MPMX20_03253 | | tRNA pseudouridine synthase A | 0.92 | MPMX20_04596 | | Sensory histidine kinase/phosphatase NtrB | low | > 85 |
| Enterobacter asburiae PDN3 | 0.92 | EX28DRAFT_0286 | | tRNA pseudouridine(38-40) synthase | 0.92 | EX28DRAFT_4351 | | Signal transduction histidine kinase, nitrogen specific | low | > 76 |
| Klebsiella michiganensis M5al | 0.90 | BWI76_RS20380 | | tRNA pseudouridine(38-40) synthase TruA | 0.94 | BWI76_RS00390 | | two-component system sensor histidine kinase NtrB | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.81 | HER17_RS06990 | | tRNA pseudouridine(38-40) synthase TruA | 0.84 | HER17_RS21435 | | nitrogen regulation protein NR(II) | low | > 75 |
| Pantoea sp. MT58 | 0.80 | IAI47_06245 | | tRNA pseudouridine(38-40) synthase TruA | 0.88 | IAI47_00455 | | nitrogen regulation protein NR(II) | 0.35 | 17 |
| Erwinia tracheiphila SCR3 | 0.80 | LU632_RS07825 | truA | tRNA pseudouridine(38-40) synthase TruA | 0.90 | LU632_RS22140 | glnL | nitrogen regulation protein NR(II) | — | — |
| Serratia liquefaciens MT49 | 0.80 | IAI46_17840 | | tRNA pseudouridine(38-40) synthase TruA | 0.88 | IAI46_24955 | | nitrogen regulation protein NR(II) | low | > 86 |
| Dickeya dianthicola ME23 | 0.79 | DZA65_RS15370 | | tRNA pseudouridine(38-40) synthase TruA | 0.84 | DZA65_RS22205 | | nitrogen regulation protein NR(II) | low | > 75 |
| Dickeya dianthicola 67-19 | 0.79 | HGI48_RS14435 | | tRNA pseudouridine(38-40) synthase TruA | 0.84 | HGI48_RS21230 | | nitrogen regulation protein NR(II) | low | > 71 |
| Dickeya dadantii 3937 | 0.79 | DDA3937_RS14465 | | tRNA pseudouridine(38-40) synthase TruA | 0.84 | DDA3937_RS00130 | | nitrogen regulation protein NR(II) | low | > 74 |
| Rahnella sp. WP5 | 0.73 | EX31_RS19600 | | tRNA pseudouridine(38-40) synthase TruA | 0.87 | EX31_RS15875 | | nitrogen regulation protein NR(II) | low | > 89 |
| Vibrio cholerae E7946 ATCC 55056 | 0.73 | CSW01_05090 | | tRNA pseudouridine(38-40) synthase TruA | 0.56 | CSW01_13860 | | nitrogen regulation protein NR(II) | low | > 62 |
| Shewanella sp. ANA-3 | 0.70 | Shewana3_1479 | truA | tRNA pseudouridine synthase A (RefSeq) | 0.48 | Shewana3_0259 | | signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.69 | Sama_2150 | truA | tRNA pseudouridine synthase A (RefSeq) | 0.46 | Sama_3426 | | nitrogen regulation protein (RefSeq) | 0.49 | 6 |
| Shewanella loihica PV-4 | 0.69 | Shew_2306 | | tRNA pseudouridine synthase A (RefSeq) | 0.46 | Shew_3560 | | signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.65 | MIT1002_02529 | | tRNA pseudouridine synthase A | 0.43 | MIT1002_03185 | | Nitrogen regulation protein NR(II) | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.58 | B158DRAFT_1483 | | pseudouridylate synthase I | 0.28 | B158DRAFT_0715 | | Signal transduction histidine kinase, nitrogen specific | low | > 40 |
| Pseudomonas sp. S08-1 | 0.56 | OH686_04450 | | tRNA pseudouridine(38-40) synthase | 0.42 | OH686_10635 | | Nitrogen regulation protein NtrB | low | > 80 |
| Pseudomonas putida KT2440 | 0.56 | PP_1994 | | tRNA pseudouridine (38-40)synthase | 0.43 | PP_5047 | | two-component system sensory histidine kinase/phosphatase GlnL/GlnG | low | > 96 |
| Pseudomonas fluorescens SBW25 | 0.55 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | 0.42 | PFLU_RS01690 | | nitrogen regulation protein NR(II) | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.55 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | 0.42 | PFLU_RS01690 | | nitrogen regulation protein NR(II) | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.54 | PfGW456L13_3941 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.42 | PfGW456L13_346 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.54 | PS417_18565 | | pseudouridine synthase | 0.42 | PS417_01640 | | histidine kinase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.54 | Pf1N1B4_7 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.42 | Pf1N1B4_1610 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.54 | AO356_21435 | | pseudouridine synthase | 0.42 | AO356_09725 | | histidine kinase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.54 | Pf6N2E2_70 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.42 | Pf6N2E2_3825 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 103 |
| Pseudomonas sp. RS175 | 0.53 | PFR28_02817 | | tRNA pseudouridine synthase A | 0.42 | PFR28_04945 | | Sensory histidine kinase/phosphatase NtrB | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.53 | AO353_20660 | | pseudouridine synthase | 0.41 | AO353_12150 | | histidine kinase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.53 | Psyr_1662 | | tRNA pseudouridine synthase | 0.42 | Psyr_4821 | | PAS/PAC sensor signal transduction histidine kinase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.53 | Psyr_1662 | | tRNA pseudouridine synthase | 0.42 | Psyr_4821 | | PAS/PAC sensor signal transduction histidine kinase | low | > 86 |
| Marinobacter adhaerens HP15 | 0.52 | HP15_1829 | | tRNA pseudouridine synthase A | 0.40 | HP15_426 | | signal transduction histidine kinase, nitrogen specific, NtrB | low | > 73 |
| Pseudomonas stutzeri RCH2 | 0.52 | Psest_2585 | | pseudouridylate synthase I | 0.40 | Psest_3931 | | Signal transduction histidine kinase, nitrogen specific | low | > 67 |
| Dechlorosoma suillum PS | 0.49 | Dsui_3194 | | pseudouridylate synthase I | 0.38 | Dsui_1050 | | signal transduction histidine kinase, nitrogen specific | low | > 51 |
| Acinetobacter radioresistens SK82 | 0.49 | MPMX26_00352 | | tRNA pseudouridine synthase A | 0.35 | MPMX26_01293 | | Sensory histidine kinase/phosphatase NtrB | low | > 36 |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS16485 | | tRNA pseudouridine synthase A | 0.36 | HSERO_RS15685 | | histidine kinase | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS33885 | | tRNA pseudouridine synthase A | 0.32 | BPHYT_RS12940 | | signal transduction histidine kinase | low | > 109 |
| Lysobacter sp. OAE881 | 0.46 | ABIE51_RS08245 | | tRNA pseudouridine(38-40) synthase TruA | 0.25 | ABIE51_RS01365 | | ATP-binding protein | — | — |
| Paraburkholderia graminis OAS925 | 0.46 | ABIE53_004807 | | tRNA pseudouridine38-40 synthase | 0.33 | ABIE53_002805 | | two-component system nitrogen regulation sensor histidine kinase GlnL | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.46 | H281DRAFT_06069 | | tRNA pseudouridine38-40 synthase | 0.32 | H281DRAFT_00453 | | two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.45 | QEN71_RS17635 | | tRNA pseudouridine(38-40) synthase TruA | 0.32 | QEN71_RS05670 | | nitrogen regulation protein NR(II) | low | > 153 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.45 | Xcc-8004.1961.1 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.22 | Xcc-8004.251.1 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS01700 | | tRNA pseudouridine(38-40) synthase TruA | 0.22 | LRK54_RS07985 | | ATP-binding protein | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS01480 | | tRNA pseudouridine(38-40) synthase TruA | 0.21 | LRK55_RS07735 | | ATP-binding protein | low | > 63 |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_1532 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.34 | Ac3H11_4431 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 79 |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS02595 | | tRNA pseudouridine(38-40) synthase TruA | 0.36 | RALBFv3_RS15535 | | PAS domain-containing sensor histidine kinase | — | — |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS11130 | | tRNA pseudouridine(38-40) synthase TruA | 0.36 | UW163_RS12995 | | PAS domain-containing sensor histidine kinase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.43 | ABZR86_RS08015 | | tRNA pseudouridine(38-40) synthase TruA | 0.25 | ABZR86_RS15510 | | ATP-binding protein | low | > 74 |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS09975 | | tRNA pseudouridine(38-40) synthase TruA | 0.37 | RS_RS06315 | | PAS domain-containing sensor histidine kinase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.42 | RPSI07_RS14720 | | tRNA pseudouridine(38-40) synthase TruA | 0.36 | RPSI07_RS17820 | | PAS domain-containing sensor histidine kinase | low | > 81 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS04265 | | tRNA pseudouridine(38-40) synthase TruA | 0.29 | ABCV34_RS03535 | | nitrogen regulation protein NR(II) | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.42 | GFF3357 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | 0.33 | GFF5270 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 90 |
| Rhodanobacter sp. FW510-T8 | 0.42 | OKGIIK_04830 | truA | tRNA pseudouridine(38-40) synthase TruA | 0.24 | OKGIIK_14470 | | PAS domain-containing sensor histidine kinase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS14510 | | tRNA pseudouridine(38-40) synthase TruA | 0.32 | ABZR87_RS11065 | | nitrogen regulation protein NR(II) | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS14370 | | tRNA pseudouridine synthase A | 0.34 | RR42_RS12985 | | histidine kinase | — | — |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS00165 | | tRNA pseudouridine(38-40) synthase TruA | 0.22 | ABIE41_RS16790 | | ATP-binding protein | low | > 77 |
| Azospirillum sp. SherDot2 | 0.32 | MPMX19_02005 | | tRNA pseudouridine synthase A | 0.24 | MPMX19_01111 | | Sensory histidine kinase/phosphatase NtrB | — | — |
| Azospirillum brasilense Sp245 | 0.32 | AZOBR_RS03570 | | tRNA pseudouridine synthase A | 0.23 | AZOBR_RS14425 | | ATPase | — | — |
| Rhodospirillum rubrum S1H | 0.30 | Rru_A3352 | | Pseudouridylate synthase (NCBI) | 0.24 | Rru_A1677 | | Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.30 | AMB_RS01225 | | tRNA pseudouridine(38-40) synthase TruA | 0.24 | AMB_RS11945 | | PAS domain-containing sensor histidine kinase | — | — |
| Sinorhizobium meliloti 1021 | 0.30 | SMc01099 | | tRNA pseudouridine synthase A | 0.22 | SMc01042 | | nitrogen regulation protein | low | > 103 |
| Agrobacterium fabrum C58 | 0.29 | Atu0368 | | tRNA pseudouridine synthase I | 0.22 | Atu1445 | | two component sensor kinase | low | > 89 |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_003225 | | tRNA pseudouridine(38-40) synthase TruA | 0.22 | TX73_013415 | | nitrogen regulation protein NR(II) | low | > 86 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS01915 | | tRNA pseudouridine(38-40) synthase TruA | 0.22 | ABIE40_RS09085 | | nitrogen regulation protein NR(II) | low | > 107 |
| Sphingomonas koreensis DSMZ 15582 | 0.28 | Ga0059261_0647 | | tRNA pseudouridine(38-40) synthase | 0.15 | Ga0059261_0139 | | Signal transduction histidine kinase, nitrogen specific | low | > 68 |
| Dinoroseobacter shibae DFL-12 | 0.26 | Dshi_1938 | | tRNA pseudouridine synthase A (RefSeq) | 0.21 | Dshi_1575 | | signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) | low | > 64 |
Not shown: 24 genomes with orthologs for GFF1934 only; 1 genomes with orthologs for GFF2221 only