Conservation of cofitness between GFF4305 and GFF1500 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 1.0 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.81 12
Enterobacter asburiae PDN3 0.99 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.90 EX28DRAFT_3217 tRNA pseudouridine(55) synthase low > 76
Klebsiella michiganensis M5al 0.99 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.90 BWI76_RS25080 tRNA pseudouridine(55) synthase — —
Enterobacter sp. TBS_079 0.99 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.89 MPMX20_04071 tRNA pseudouridine synthase B low > 85
Escherichia coli ECRC98 0.98 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.95 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB low > 86
Escherichia coli BL21 0.98 ECD_00354 tRNA-guanine transglycosylase 0.95 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase low > 61
Escherichia coli ECOR38 0.98 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.95 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.89 6
Escherichia coli ECRC99 0.98 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.95 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.95 OHPLBJKB_00534 tRNA pseudouridine synthase B low > 73
Escherichia coli ECRC100 0.98 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.95 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB low > 80
Escherichia coli ECRC62 0.98 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.95 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia fergusonii Becca 0.98 EFB2_03651 Queuine tRNA-ribosyltransferase 0.95 EFB2_00657 tRNA pseudouridine synthase B low > 86
Escherichia coli ECRC102 0.98 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.95 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECOR27 0.98 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.95 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia coli BW25113 0.98 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.95 b3166 truB tRNA pseudouridine synthase B (NCBI) low > 76
Escherichia coli Nissle 1917 0.98 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.95 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC101 0.98 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.95 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB low > 87
Pantoea sp. MT58 0.95 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.77 IAI47_17015 tRNA pseudouridine(55) synthase TruB low > 76
Dickeya dadantii 3937 0.93 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.76 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB low > 74
Pectobacterium carotovorum WPP14 0.92 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.78 HER17_RS18200 tRNA pseudouridine(55) synthase TruB low > 75
Dickeya dianthicola 67-19 0.92 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.75 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB low > 71
Rahnella sp. WP5 0.92 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.75 EX31_RS08530 tRNA pseudouridine(55) synthase TruB low > 89
Dickeya dianthicola ME23 0.92 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.74 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB low > 75
Erwinia tracheiphila SCR3 0.92 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.74 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB low > 74
Serratia liquefaciens MT49 0.92 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.80 IAI46_01945 tRNA pseudouridine(55) synthase TruB low > 86
Shewanella loihica PV-4 0.86 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.60 Shew_2825 tRNA pseudouridine synthase B (RefSeq) low > 60
Shewanella sp. ANA-3 0.85 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.63 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.85 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.66 CSW01_03400 tRNA pseudouridine(55) synthase TruB low > 62
Shewanella amazonensis SB2B 0.85 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.64 Sama_0963 pseudouridylate synthase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.77 MIT1002_02813 Queuine tRNA-ribosyltransferase 0.48 MIT1002_01773 tRNA pseudouridine synthase B low > 70
Pseudomonas sp. S08-1 0.75 OH686_17430 tRNA-guanine transglycosylase 0.47 OH686_17155 tRNA pseudouridine(55) synthase low > 80
Pseudomonas stutzeri RCH2 0.73 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 0.48 Psest_0983 tRNA pseudouridine 55 synthase — —
Pseudomonas sp. RS175 0.73 PFR28_00277 Queuine tRNA-ribosyltransferase 0.48 PFR28_00092 tRNA pseudouridine synthase B — —
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_15790 queuine tRNA-ribosyltransferase 0.48 AO353_05550 pseudouridine synthase — —
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.48 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.48 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_06690 queuine tRNA-ribosyltransferase 0.48 AO356_07400 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.48 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 103
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.50 B158DRAFT_0108 tRNA pseudouridine 55 synthase low > 40
Marinobacter adhaerens HP15 0.72 HP15_1479 queuine tRNA-ribosyltransferase 0.48 HP15_3065 tRNA pseudouridine synthase B low > 73
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1228 tRNA-guanine transglycosylase 0.48 Psyr_4178 tRNA pseudouridine synthase B — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1228 tRNA-guanine transglycosylase 0.48 Psyr_4178 tRNA pseudouridine synthase B — —
Pseudomonas putida KT2440 0.72 PP_0833 queuine tRNA-ribosyltransferase 0.48 PP_4710 tRNA pseudouridine 55 synthase 0.30 27
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.48 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas simiae WCS417 0.72 PS417_23245 queuine tRNA-ribosyltransferase 0.47 PS417_23960 pseudouridine synthase — —
Pseudomonas fluorescens SBW25 0.72 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.48 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Dechlorosoma suillum PS 0.68 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming 0.43 Dsui_2720 tRNA pseudouridine 55 synthase low > 51
Acinetobacter radioresistens SK82 0.68 MPMX26_00438 Queuine tRNA-ribosyltransferase 0.39 MPMX26_02778 tRNA pseudouridine synthase B low > 36
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt 0.31 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB low > 74
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS03130 tRNA guanosine(34) transglycosylase Tgt 0.37 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB low > 59
Rhodanobacter denitrificans MT42 0.66 LRK55_RS02880 tRNA guanosine(34) transglycosylase Tgt 0.37 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB low > 63
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS17400 queuine tRNA-ribosyltransferase 0.38 RR42_RS12835 tRNA pseudouridine synthase B low > 128
Lysobacter sp. OAE881 0.65 ABIE51_RS15020 tRNA guanosine(34) transglycosylase Tgt 0.35 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB 0.50 17
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.41 HSERO_RS17985 tRNA pseudouridine synthase B 0.28 61
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_10000 tgt tRNA guanosine(34) transglycosylase Tgt 0.37 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB low > 52
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.2168.1 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.36 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.35 25
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS26640 tRNA guanosine(34) transglycosylase Tgt 0.38 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB low > 153
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04670 tRNA-guanine transglycosylase 0.37 H281DRAFT_05106 tRNA pseudouridine synthase B low > 103
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS03410 queuine tRNA-ribosyltransferase 0.39 BPHYT_RS08080 tRNA pseudouridine synthase B low > 109
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS01280 tRNA guanosine(34) transglycosylase Tgt 0.37 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB low > 80
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt 0.38 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS07940 tRNA guanosine(34) transglycosylase Tgt 0.38 UW163_RS13150 tRNA pseudouridine(55) synthase TruB — —
Ralstonia solanacearum GMI1000 0.62 RS_RS13575 tRNA guanosine(34) transglycosylase Tgt 0.38 RS_RS06470 tRNA pseudouridine(55) synthase TruB low > 80
Ralstonia solanacearum PSI07 0.61 RPSI07_RS11615 tRNA guanosine(34) transglycosylase Tgt 0.38 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB low > 81
Acidovorax sp. GW101-3H11 0.58 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.35 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.39 42
Variovorax sp. SCN45 0.56 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) 0.35 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) low > 127
Rhodospirillum rubrum S1H 0.55 Rru_A0280 Queuine tRNA-ribosyltransferase (NCBI) 0.27 Rru_A3783 tRNA pseudouridine synthase B (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.53 AMB_RS03090 tRNA guanosine(34) transglycosylase Tgt 0.29 AMB_RS20810 tRNA pseudouridine(55) synthase TruB low > 64
Azospirillum sp. SherDot2 0.52 MPMX19_01697 Queuine tRNA-ribosyltransferase 0.31 MPMX19_02524 tRNA pseudouridine synthase B low > 112
Phaeobacter inhibens DSM 17395 0.52 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt 0.31 PGA1_c32950 tRNA pseudouridine synthase B low > 62
Desulfovibrio vulgaris Hildenborough JW710 0.51 DVU0726 tgt queuine tRNA-ribosyltransferase (TIGR) 0.22 DVU0505 truB tRNA pseudouridine synthase B (TIGR) low > 55
Dinoroseobacter shibae DFL-12 0.51 Dshi_2346 queuine tRNA-ribosyltransferase (RefSeq) 0.30 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) low > 64
Caulobacter crescentus NA1000 0.50 CCNA_01659 queuine tRNA-ribosyltransferase 0.28 CCNA_00035 tRNA pseudouridine synthase B low > 66
Bosea sp. OAE506 0.50 ABIE41_RS18290 tRNA guanosine(34) transglycosylase Tgt 0.30 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB low > 77
Rhodopseudomonas palustris CGA009 0.50 TX73_013485 tRNA guanosine(34) transglycosylase Tgt 0.32 TX73_002255 tRNA pseudouridine(55) synthase TruB 0.55 4
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_01659 queuine tRNA-ribosyltransferase 0.28 CCNA_00035 tRNA pseudouridine synthase B low > 67
Sinorhizobium meliloti 1021 0.50 SMc01206 queuine tRNA-ribosyltransferase 0.29 SMc00321 tRNA pseudouridine synthase B 0.68 4
Brevundimonas sp. GW460-12-10-14-LB2 0.50 A4249_RS02905 tRNA guanosine(34) transglycosylase Tgt 0.25 A4249_RS13345 tRNA pseudouridine(55) synthase TruB low > 48
Rhizobium sp. OAE497 0.49 ABIE40_RS09435 tRNA guanosine(34) transglycosylase Tgt 0.28 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB low > 107
Agrobacterium fabrum C58 0.49 Atu1677 queuine tRNA-ribosyltransferase 0.27 Atu0085 tRNA pseudouridine 55 synthase low > 89
Synechococcus elongatus PCC 7942 0.46 Synpcc7942_0455 tgt queuine tRNA-ribosyltransferase 0.21 Synpcc7942_1222 truB tRNA pseudouridine synthase B low > 38

Not shown: 19 genomes with orthologs for GFF4305 only; 1 genomes with orthologs for GFF1500 only