Conservation of cofitness between GFF2942 and GFF1059 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2942 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) 1.0 GFF1059 ABC transporter, ATP-binding protein 0.89 1
Escherichia coli BL21 0.96 ECD_03063 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.98 ECD_04267 energy-dependent translational throttle A low > 61
Escherichia fergusonii Becca 0.96 EFB2_00625 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC 0.98 EFB2_04053 Energy-dependent translational throttle protein EttA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.96 OHPLBJKB_00502 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC 0.98 OHPLBJKB_03670 Energy-dependent translational throttle protein EttA low > 73
Escherichia coli Nissle 1917 0.96 ECOLIN_RS18405 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.98 ECOLIN_RS25205 energy-dependent translational throttle protein EttA low > 55
Escherichia coli ECRC101 0.96 MCAODC_08480 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.98 MCAODC_01690 ettA energy-dependent translational throttle protein EttA low > 87
Escherichia coli ECRC99 0.96 KEDOAH_10190 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.98 KEDOAH_16980 ettA energy-dependent translational throttle protein EttA
Escherichia coli ECRC100 0.96 OKFHMN_17960 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.98 OKFHMN_11175 ettA energy-dependent translational throttle protein EttA low > 80
Escherichia coli ECOR38 0.96 HEPCGN_16835 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.98 HEPCGN_09180 ettA energy-dependent translational throttle protein EttA low > 87
Escherichia coli ECRC62 0.96 BNILDI_01775 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.98 BNILDI_08090 ettA energy-dependent translational throttle protein EttA low > 75
Escherichia coli ECRC102 0.96 NIAGMN_15720 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.98 NIAGMN_09025 ettA energy-dependent translational throttle protein EttA
Escherichia coli ECRC98 0.96 JDDGAC_21585 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.98 JDDGAC_14770 ettA energy-dependent translational throttle protein EttA low > 86
Escherichia coli ECOR27 0.96 NOLOHH_09760 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.98 NOLOHH_03505 ettA energy-dependent translational throttle protein EttA low > 75
Escherichia coli BW25113 0.96 b3198 kdsC 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) 0.98 b4391 yjjK fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) low > 76
Enterobacter sp. TBS_079 0.91 MPMX20_04104 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC 0.97 MPMX20_00698 Energy-dependent translational throttle protein EttA low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_3252 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 0.96 EX28DRAFT_3601 ATP-binding cassette protein, ChvD family low > 76
Klebsiella michiganensis M5al 0.82 BWI76_RS25245 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.97 BWI76_RS04175 energy-dependent translational throttle protein EttA low > 92
Pantoea sp. MT58 0.79 IAI47_17165 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.95 IAI47_16325 energy-dependent translational throttle protein EttA low > 76
Pectobacterium carotovorum WPP14 0.78 HER17_RS20040 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.95 HER17_RS02745 energy-dependent translational throttle protein EttA low > 75
Erwinia tracheiphila SCR3 0.77 LU632_RS21260 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.95 LU632_RS02565 ettA energy-dependent translational throttle protein EttA low > 74
Rahnella sp. WP5 0.76 EX31_RS12420 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.94 EX31_RS04000 energy-dependent translational throttle protein EttA low > 89
Dickeya dianthicola ME23 0.75 DZA65_RS01530 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.92 DZA65_RS19530 energy-dependent translational throttle protein EttA low > 75
Dickeya dianthicola 67-19 0.75 HGI48_RS01465 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.92 HGI48_RS18390 energy-dependent translational throttle protein EttA low > 71
Dickeya dadantii 3937 0.75 DDA3937_RS01550 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.92 DDA3937_RS18460 energy-dependent translational throttle protein EttA low > 74
Serratia liquefaciens MT49 0.74 IAI46_22450 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.95 IAI46_02965 energy-dependent translational throttle protein EttA low > 86
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_12795 3-deoxy-manno-octulosonate-8-phosphatase KdsC 0.81 CSW01_03650 energy-dependent translational throttle protein EttA
Shewanella loihica PV-4 0.58 Shew_3307 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq) 0.83 Shew_1183 putative ABC transporter ATP-binding protein (RefSeq)
Shewanella amazonensis SB2B 0.53 Sama_3084 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq) 0.83 Sama_1013 putative ABC transporter ATP-binding protein (RefSeq)
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_2084 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 0.73 B158DRAFT_0881 ATP-binding cassette protein, ChvD family
Shewanella sp. ANA-3 0.51 Shewana3_0676 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq) 0.84 Shewana3_1093 putative ABC transporter ATP-binding protein (RefSeq)
Shewanella oneidensis MR-1 0.50 SO3957 conserved hypothetical protein (NCBI ptt file) 0.83 SO3472 ABC transporter, ATP-binding protein (NCBI ptt file)
Alteromonas macleodii MIT1002 0.45 MIT1002_00831 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC 0.78 MIT1002_02704 putative ABC transporter ATP-binding protein
Marinobacter adhaerens HP15 0.44 HP15_2438 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 0.76 HP15_488 ABC transporter ATP-binding protein-like protein
Pseudomonas stutzeri RCH2 0.43 Psest_3309 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 0.75 Psest_3433 ATP-binding cassette protein, ChvD family
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_05160 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.75 AO353_14030 ABC transporter ATP-binding protein
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS01775 HAD family hydrolase 0.74 QEN71_RS27625 energy-dependent translational throttle protein EttA
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS04420 HAD family hydrolase 0.75 PFLU_RS26180 energy-dependent translational throttle protein EttA
Pseudomonas simiae WCS417 0.42 PS417_04365 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.75 PS417_24265 ABC transporter ATP-binding protein low > 88
Pseudomonas fluorescens SBW25 0.42 PFLU_RS04420 HAD family hydrolase 0.75 PFLU_RS26180 energy-dependent translational throttle protein EttA
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS19835 HAD family hydrolase 0.75 ABZR86_RS10725 energy-dependent translational throttle protein EttA
Pseudomonas putida KT2440 0.42 PP_0956 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.76 PP_0674 ADP/ATP ratio sensor and inhibitor of translation
Pseudomonas sp. RS175 0.42 PFR28_00177 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC 0.75 PFR28_03784 Energy-dependent translational throttle protein EttA
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_5010 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) 0.75 PfGW456L13_1453 Glutathione-regulated potassium-efflux system ATP-binding protein
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_07015 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.75 AO356_15735 ABC transporter ATP-binding protein
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_4143 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI 0.75 Psyr_4264 ABC transporter low > 86
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_3263 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) 0.75 Pf6N2E2_5084 Glutathione-regulated potassium-efflux system ATP-binding protein
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_4143 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI 0.75 Psyr_4264 ABC transporter low > 86
Ralstonia solanacearum GMI1000 0.41 RS_RS02040 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.74 RS_RS14590 energy-dependent translational throttle protein EttA low > 80
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_01923 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) 0.74 H281DRAFT_05699 sulfate-transporting ATPase low > 103
Paraburkholderia graminis OAS925 0.41 ABIE53_000722 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) 0.74 ABIE53_003656 sulfate-transporting ATPase low > 113
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS12895 HAD hydrolase family protein 0.73 LRK54_RS04630 energy-dependent translational throttle protein EttA
Rhodanobacter denitrificans MT42 0.40 LRK55_RS12595 HAD hydrolase family protein 0.73 LRK55_RS04405 energy-dependent translational throttle protein EttA
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS07080 HAD family hydrolase 0.74 ABZR87_RS02310 energy-dependent translational throttle protein EttA low > 80
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS02925 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.74 BPHYT_RS17480 ABC transporter ATP-binding protein
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS19835 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.73 HSERO_RS23550 ABC transporter ATP-binding protein low > 78
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_02285 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC 0.74 OKGIIK_11445 ettA energy-dependent translational throttle protein EttA
Pseudomonas sp. S08-1 0.38 OH686_08520 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.76 OH686_16240 Energy-dependent translational throttle protein EttA
Ralstonia solanacearum PSI07 0.38 RPSI07_RS22110 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.74 RPSI07_RS10585 energy-dependent translational throttle protein EttA low > 81
Castellaniella sp019104865 MT123 0.38 ABCV34_RS14365 HAD hydrolase family protein 0.73 ABCV34_RS08155 energy-dependent translational throttle protein EttA
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2288 Phosphatase kdsC 0.30 Synpcc7942_1381 ATPase low > 38
Acinetobacter radioresistens SK82 0.37 MPMX26_01968 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC 0.72 MPMX26_02832 Energy-dependent translational throttle protein EttA
Dechlorosoma suillum PS 0.36 Dsui_1381 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 0.70 Dsui_2746 ATP-binding cassette protein, ChvD family low > 51
Ralstonia solanacearum UW163 0.36 UW163_RS02390 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.74 UW163_RS06985 energy-dependent translational throttle protein EttA
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS11190 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.74 RALBFv3_RS06640 energy-dependent translational throttle protein EttA low > 76
Lysobacter sp. OAE881 0.33 ABIE51_RS15935 HAD hydrolase family protein 0.73 ABIE51_RS04610 energy-dependent translational throttle protein EttA
Desulfovibrio vulgaris Hildenborough JW710 0.33 DVU1625 phosphatase, YrbI family (TIGR) 0.58 DVU2586 ABC transporter, ATP-binding protein (TIGR)
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS00030 HAD-IIIA family hydrolase 0.58 HMPREF1078_RS07420 energy-dependent translational throttle protein EttA low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.33 Echvi_2130 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 0.60 Echvi_0034 ATP-binding cassette protein, ChvD family low > 79
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.1666.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) 0.71 Xcc-8004.4400.1 ABC transporter, ATP-binding protein
Fusobacterium nucleatum SB010 0.33 HUW76_02570 HAD family hydrolase 0.29 HUW76_00125 ATP-binding cassette domain-containing protein low > 35
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_18675 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.58 CA264_18150 energy-dependent translational throttle protein EttA low > 74
Variovorax sp. SCN45 0.32 GFF3270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) 0.70 GFF6780 Energy-dependent translational throttle protein EttA low > 127
Acidovorax sp. GW101-3H11 0.32 Ac3H11_4271 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) 0.69 Ac3H11_387 ABC transporter ATP-binding protein
Desulfovibrio vulgaris Miyazaki F 0.31 DvMF_0431 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (RefSeq) 0.58 DvMF_1058 putative ABC transporter ATP-binding protein (RefSeq) low > 51
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS12455 HAD-IIIA family hydrolase 0.57 ABI39_RS14035 energy-dependent translational throttle protein EttA
Phocaeicola vulgatus CL09T03C04 0.30 HMPREF1058_RS16535 HAD-IIIA family hydrolase 0.57 HMPREF1058_RS17820 energy-dependent translational throttle protein EttA
Bacteroides thetaiotaomicron VPI-5482 0.28 BT1677 putative hydrolase (NCBI ptt file) 0.57 BT1186 ABC transporter ATP-binding protein (NCBI ptt file)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF2443 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) 0.72 GFF3531 ABC transporter low > 90
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS05470 HAD-IIIA family hydrolase 0.58 HMPREF1181_RS12740 energy-dependent translational throttle protein EttA 0.51 5
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS03520 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 0.59 CA265_RS14910 ABC transporter ATP-binding protein low > 88
Bacteroides ovatus ATCC 8483 0.26 BACOVA_04421 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 0.57 BACOVA_03986 ATP-binding cassette protein, ChvD family

Not shown: 2 genomes with orthologs for GFF2942 only; 19 genomes with orthologs for GFF1059 only