Conservation of cofitness between ECD_01571 and ECD_01110 in Escherichia coli BL21

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01571 pyridine nucleotide transhydrogenase, beta subunit 1.0 ECD_01110 transcription-repair coupling factor 0.48 4
Escherichia coli ECOR27 1.00 NOLOHH_18200 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 1.00 NOLOHH_20995 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 1.00 OKFHMN_27695 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 1.00 OKFHMN_03470 mfd transcription-repair coupling factor — —
Escherichia coli ECRC98 1.00 JDDGAC_02285 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 1.00 JDDGAC_07130 mfd transcription-repair coupling factor — —
Escherichia coli ECOR38 1.00 HEPCGN_06070 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 1.00 HEPCGN_24015 mfd transcription-repair coupling factor low > 85
Escherichia coli ECRC102 1.00 NIAGMN_00380 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 1.00 NIAGMN_24360 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 1.00 MCAODC_17715 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 1.00 MCAODC_22830 mfd transcription-repair coupling factor — —
Escherichia fergusonii Becca 1.00 EFB2_02390 NAD(P) transhydrogenase subunit beta 1.00 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02124 NAD(P) transhydrogenase subunit beta 1.00 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Escherichia coli ECRC99 1.00 KEDOAH_00410 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 1.00 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli BW25113 1.00 b1602 pntB pyridine nucleotide transhydrogenase (NCBI) 1.00 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli ECRC62 1.00 BNILDI_16990 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 1.00 BNILDI_19160 mfd transcription-repair coupling factor — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF1795 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.96 GFF3397 Transcription-repair coupling factor low > 78
Klebsiella michiganensis M5al 0.93 BWI76_RS16200 NAD(P) transhydrogenase subunit beta 0.93 BWI76_RS11205 transcription-repair coupling factor low > 92
Enterobacter sp. TBS_079 0.93 MPMX20_02032 NAD(P) transhydrogenase subunit beta 0.92 MPMX20_01795 Transcription-repair-coupling factor low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_1543 NAD/NADP transhydrogenase beta subunit 0.93 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Rahnella sp. WP5 0.87 EX31_RS07210 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.82 EX31_RS24520 transcription-repair coupling factor low > 89
Pectobacterium carotovorum WPP14 0.86 HER17_RS10515 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.84 HER17_RS08775 transcription-repair coupling factor low > 75
Serratia liquefaciens MT49 0.86 IAI46_13270 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.83 IAI46_10320 transcription-repair coupling factor low > 86
Dickeya dadantii 3937 0.85 DDA3937_RS10960 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.82 DDA3937_RS13000 transcription-repair coupling factor low > 74
Erwinia tracheiphila SCR3 0.85 LU632_RS11430 pntB Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.84 LU632_RS14730 mfd transcription-repair coupling factor low > 74
Pantoea sp. MT58 0.85 IAI47_09570 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.83 IAI47_11975 transcription-repair coupling factor low > 76
Dickeya dianthicola ME23 0.85 DZA65_RS11370 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.81 DZA65_RS13530 transcription-repair coupling factor low > 75
Dickeya dianthicola 67-19 0.85 HGI48_RS10910 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta 0.82 HGI48_RS13065 transcription-repair coupling factor 0.60 61
Shewanella oneidensis MR-1 0.81 SO3741 pntB NAD(P) transhydrogenase, beta subunit (NCBI ptt file) 0.56 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.80 Shewana3_0853 pntB pyridine nucleotide transhydrogenase (RefSeq) 0.56 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Shewanella amazonensis SB2B 0.79 Sama_2841 pntB pyridine nucleotide transhydrogenase (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_17045 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.65 CSW01_09445 transcription-repair coupling factor low > 62
Magnetospirillum magneticum AMB-1 0.64 AMB_RS14195 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.33 AMB_RS12390 transcription-repair coupling factor low > 64
Acidovorax sp. GW101-3H11 0.63 Ac3H11_662 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.45 Ac3H11_328 Transcription-repair coupling factor low > 79
Agrobacterium fabrum C58 0.57 Atu2494 NAD(P)+ transhydrogenase beta chain 0.31 Atu1778 transcription-repair coupling factor low > 89
Phaeobacter inhibens DSM 17395 0.57 PGA1_c10040 NAD(P) transhydrogenase subunit beta 0.32 PGA1_c14920 transcription-repair-coupling factor Mfd low > 62
Dinoroseobacter shibae DFL-12 0.56 Dshi_1234 NAD(P)(+) transhydrogenase (AB-specific) (RefSeq) 0.32 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.50 Rru_A2181 NAD(P) transhydrogenase, beta subunit (NCBI) 0.32 Rru_A1726 Transcription-repair coupling factor (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.50 TX73_021670 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.33 TX73_013805 transcription-repair coupling factor — —
Castellaniella sp019104865 MT123 0.50 ABCV34_RS10180 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.43 ABCV34_RS08660 transcription-repair coupling factor low > 48
Azospirillum sp. SherDot2 0.49 MPMX19_01276 NAD(P) transhydrogenase subunit beta 0.32 MPMX19_00876 Transcription-repair-coupling factor low > 112
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_10870 NAD synthetase 0.53 AO356_02270 transcription-repair coupling factor low > 104
Pseudomonas fluorescens FW300-N2E3 0.49 AO353_11080 NAD synthetase 0.54 AO353_00435 transcription-repair coupling factor low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_5018 NAD(P) transhydrogenase, beta subunit 0.54 Psyr_1896 transcription-repair coupling factor low > 86
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS01355 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.46 ABZR87_RS13240 transcription-repair coupling factor low > 80
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_5018 NAD(P) transhydrogenase, beta subunit 0.54 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_4040 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.53 Pf6N2E2_2278 Transcription-repair coupling factor low > 103
Pseudomonas sp. RS175 0.48 PFR28_04723 NAD(P) transhydrogenase subunit beta 0.53 PFR28_01123 Transcription-repair-coupling factor low > 88
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS00545 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.53 PFLU_RS07710 transcription-repair coupling factor 0.30 73
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_1820 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.53 Pf1N1B4_3916 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens SBW25 0.48 PFLU_RS00545 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.53 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas stutzeri RCH2 0.48 Psest_4205 NAD/NADP transhydrogenase beta subunit 0.55 Psest_1653 transcription-repair coupling factor (mfd) low > 67
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_558 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.53 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas simiae WCS417 0.48 PS417_00560 NAD synthetase 0.53 PS417_07635 transcription-repair coupling factor low > 88
Paraburkholderia graminis OAS925 0.48 ABIE53_000814 NAD(P) transhydrogenase subunit beta 0.46 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Ralstonia solanacearum PSI07 0.47 RPSI07_RS11515 NAD synthetase 0.45 RPSI07_RS16040 transcription-repair coupling factor low > 81
Ralstonia solanacearum IBSBF1503 0.47 RALBFv3_RS05785 NAD(P) transhydrogenase subunit beta 0.46 RALBFv3_RS01445 transcription-repair coupling factor low > 76
Ralstonia solanacearum UW163 0.47 UW163_RS07840 NAD(P) transhydrogenase subunit beta 0.46 UW163_RS14755 transcription-repair coupling factor — —
Acinetobacter radioresistens SK82 0.47 MPMX26_00530 NAD(P) transhydrogenase subunit beta 0.47 MPMX26_01319 Transcription-repair-coupling factor low > 36
Pseudomonas putida KT2440 0.47 PP_0155 pyridine nucleotide transhydrogenase, beta subunit 0.53 PP_2148 transcription-repair coupling factor low > 96
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_04655 NAD(P) transhydrogenase subunit beta 0.46 H281DRAFT_00880 transcription-repair coupling factor low > 103
Sphingomonas koreensis DSMZ 15582 0.46 Ga0059261_1973 NAD/NADP transhydrogenase beta subunit 0.32 Ga0059261_0960 transcription-repair coupling factor (mfd) low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS09070 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.32 A4249_RS04775 transcription-repair coupling factor low > 48
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS26720 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.46 QEN71_RS22060 transcription-repair coupling factor low > 153
Ralstonia solanacearum GMI1000 0.46 RS_RS13675 NAD(P) transhydrogenase subunit beta 0.46 RS_RS08275 transcription-repair coupling factor low > 80
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS03380 NAD(P) transhydrogenase subunit beta 0.46 BPHYT_RS09290 helicase low > 109
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS25230 NAD synthetase 0.44 RR42_RS07845 transcription-repair coupling factor low > 128
Variovorax sp. OAS795 0.46 ABID97_RS04440 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.46 ABID97_RS17285 transcription-repair coupling factor low > 91
Sinorhizobium meliloti 1021 0.46 SMc03938 NAD(P) transhydrogenase subunit beta 0.32 SMc04450 transcription-repair coupling factor low > 103
Bosea sp. OAE506 0.45 ABIE41_RS09270 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.32 ABIE41_RS15825 transcription-repair coupling factor low > 77
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS03495 NAD(P) transhydrogenase subunit beta 0.46 HSERO_RS15180 transcription-repair coupling factor low > 78
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_03412 NAD(P) transhydrogenase subunit beta PntB 0.32 CCNA_01920 transcription-repair coupling factor Mfd low > 67
Caulobacter crescentus NA1000 0.45 CCNA_03412 NAD(P) transhydrogenase subunit beta PntB 0.32 CCNA_01920 transcription-repair coupling factor Mfd low > 66
Pseudomonas sp. S08-1 0.45 OH686_11935 NAD(P) transhydrogenase subunit beta 0.54 OH686_21990 transcription-repair coupling factor low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF2606 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) 0.45 GFF4934 Transcription-repair coupling factor low > 90
Shewanella loihica PV-4 0.43 Shew_0662 NAD(P) transhydrogenase, beta subunit (RefSeq) 0.56 Shew_1630 transcription-repair coupling factor (RefSeq) low > 60
Rhizobium sp. OAE497 0.42 ABIE40_RS16590 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.31 ABIE40_RS09310 transcription-repair coupling factor low > 107
Alteromonas macleodii MIT1002 0.41 MIT1002_03907 NAD(P) transhydrogenase subunit beta 0.58 MIT1002_01646 Transcription-repair-coupling factor low > 70
Lysobacter sp. OAE881 0.38 ABIE51_RS05560 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.50 ABIE51_RS14320 transcription-repair coupling factor low > 62
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS03825 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.50 LRK54_RS02040 transcription-repair coupling factor low > 59
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_10675 pntB NAD(P) transhydrogenase subunit beta 0.49 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Bifidobacterium breve UCC2003 0.36 BBR_RS15195 NAD(P) transhydrogenase subunit beta 0.27 BBR_RS14115 transcription-repair coupling factor low > 34
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS22120 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.51 ABZR86_RS21210 transcription-repair coupling factor low > 74
Rhodanobacter denitrificans MT42 0.35 LRK55_RS03575 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta 0.50 LRK55_RS01815 transcription-repair coupling factor low > 63
Dechlorosoma suillum PS 0.32 Dsui_2937 NAD/NADP transhydrogenase beta subunit 0.44 Dsui_2385 transcription-repair coupling factor Mfd low > 51

Not shown: 4 genomes with orthologs for ECD_01571 only; 6 genomes with orthologs for ECD_01110 only