| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | 1.0 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | 0.87 | 1 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | 1.00 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 87 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 87 |
| Escherichia coli BW25113 | 1.00 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | 1.00 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 1.00 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | 1.00 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 86 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | 1.00 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | low | > 73 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 80 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.93 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.98 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.89 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | 0.92 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.89 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | 0.89 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | low | > 85 |
| Klebsiella michiganensis M5al | 0.86 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.93 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 92 |
| Rahnella sp. WP5 | 0.85 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.82 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 89 |
| Serratia liquefaciens MT49 | 0.83 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.80 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 86 |
| Pantoea sp. MT58 | 0.82 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.85 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 76 |
| Dickeya dadantii 3937 | 0.81 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.80 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.41 | 39 |
| Dickeya dianthicola 67-19 | 0.79 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.80 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 71 |
| Dickeya dianthicola ME23 | 0.79 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.80 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.79 | LU632_RS05485 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.85 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.78 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.81 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Shewanella sp. ANA-3 | 0.68 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.65 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.63 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 62 |
| Shewanella amazonensis SB2B | 0.66 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.63 | Sama_1988 | | pseudouridylate synthase (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.65 | Shew_3224 | | hypothetical protein (RefSeq) | 0.66 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.46 | HP15_2926 | | ribosomal RNA small subunit methyltransferase E | 0.51 | HP15_2221 | | pseudouridine synthase, RluA family | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_03054 | | Ribosomal RNA small subunit methyltransferase E | 0.63 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.43 | B158DRAFT_0180 | | RNA methyltransferase, RsmE family | 0.55 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | low | > 40 |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_08050 | | 16S rRNA methyltransferase | 0.53 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.47 | 17 |
| Pseudomonas sp. RS175 | 0.42 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | 0.55 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.54 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.54 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.55 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_13565 | | 16S rRNA methyltransferase | 0.55 | AO356_20125 | | 23S rRNA pseudouridylate synthase | low | > 104 |
| Pseudomonas putida KT2440 | 0.41 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | 0.55 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | low | > 96 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_26545 | | 16S rRNA methyltransferase | 0.54 | PS417_21480 | | 23S rRNA pseudouridylate synthase | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.51 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.40 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.52 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Pseudomonas stutzeri RCH2 | 0.40 | Psest_0305 | | RNA methyltransferase, RsmE family | 0.56 | Psest_1680 | | pseudouridine synthase, RluA family | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.40 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.55 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.40 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.55 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas sp. S08-1 | 0.39 | OH686_10855 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.54 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | low | > 80 |
| Dyella japonica UNC79MFTsu3.2 | 0.38 | ABZR86_RS10230 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | ABZR86_RS02725 | | RluA family pseudouridine synthase | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.1558.1 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.42 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.45 | LRK54_RS17895 | | RluA family pseudouridine synthase | low | > 59 |
| Acinetobacter radioresistens SK82 | 0.35 | MPMX26_01001 | | Ribosomal RNA small subunit methyltransferase E | 0.43 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | low | > 36 |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS03930 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.45 | LRK55_RS17750 | | RluA family pseudouridine synthase | low | > 63 |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS05260 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.43 | ABIE51_RS11800 | | RluA family pseudouridine synthase | 0.49 | 18 |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.47 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.47 | UW163_RS11840 | | RluA family pseudouridine synthase | — | — |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS16855 | | 16S rRNA methyltransferase | 0.46 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.34 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.46 | RPSI07_RS19085 | | RluA family pseudouridine synthase | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS17590 | | 16S rRNA methyltransferase | 0.46 | RR42_RS14155 | | pseudouridine synthase | low | > 128 |
| Dechlorosoma suillum PS | 0.33 | Dsui_1568 | | RNA methyltransferase, RsmE family | 0.47 | Dsui_2437 | | pseudouridine synthase, RluA family | — | — |
| Rhodanobacter sp. FW510-T8 | 0.33 | OKGIIK_11035 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.45 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 52 |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS01505 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.46 | ABZR87_RS10090 | | RluA family pseudouridine synthase | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.33 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.46 | RS_RS05155 | | RluA family pseudouridine synthase | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.33 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.46 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS27020 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | QEN71_RS04500 | | RluA family pseudouridine synthase | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_4323 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.43 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.34 | 66 |
| Paraburkholderia graminis OAS925 | 0.32 | ABIE53_003540 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.46 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | low | > 113 |
| Variovorax sp. SCN45 | 0.30 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | 0.44 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS07110 | | 16S rRNA methyltransferase | 0.47 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.43 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.27 | ABCV34_RS15445 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | ABCV34_RS08415 | | RluA family pseudouridine synthase | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.19 | PGA1_c02950 | | RNA methyltransferase-like protein | 0.25 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Dinoroseobacter shibae DFL-12 | 0.18 | Dshi_3099 | | protein of unknown function DUF558 (RefSeq) | 0.23 | Dshi_0315 | | pseudouridine synthase, RluA family (RefSeq) | low | > 64 |
| Azospirillum sp. SherDot2 | 0.18 | MPMX19_00577 | | Ribosomal RNA small subunit methyltransferase E | 0.24 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | low | > 112 |
| Rhizobium sp. OAE497 | 0.17 | ABIE40_RS03520 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.26 | ABIE40_RS09915 | | RluA family pseudouridine synthase | low | > 107 |
| Agrobacterium fabrum C58 | 0.17 | Atu0657 | | hypothetical protein | 0.26 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Sinorhizobium meliloti 1021 | 0.16 | SMc00826 | | 16S ribosomal RNA methyltransferase RsmE | 0.26 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | 0.36 | 22 |
| Caulobacter crescentus NA1000 Δfur | 0.16 | CCNA_03528 | | RNA methyltransferase | 0.24 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | low | > 67 |
| Caulobacter crescentus NA1000 | 0.16 | CCNA_03528 | | RNA methyltransferase | 0.24 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | low | > 66 |
| Azospirillum brasilense Sp245 | 0.15 | AZOBR_RS11890 | | 16S rRNA methyltransferase | 0.23 | AZOBR_RS06905 | | pseudouridine synthase | low | > 97 |
| Magnetospirillum magneticum AMB-1 | 0.15 | AMB_RS01240 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.26 | AMB_RS15620 | | RluA family pseudouridine synthase | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.13 | A4249_RS00350 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.25 | A4249_RS07865 | | RluA family pseudouridine synthase | — | — |
| Rhodospirillum rubrum S1H | 0.13 | Rru_A0571 | | hypothetical protein (NCBI) | 0.26 | Rru_A2659 | | Pseudouridine synthase, RluD (NCBI) | — | — |
Not shown: 19 genomes with orthologs for ECD_02776 only; 1 genomes with orthologs for ECD_01082 only