Conservation of cofitness between DZA65_RS19385 and DZA65_RS16830 in Dickeya dianthicola ME23

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 1.0 DZA65_RS16830 phosphoribosylformylglycinamidine synthase 0.84 13
Dickeya dianthicola 67-19 1.00 HGI48_RS18245 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.99 HGI48_RS15750 phosphoribosylformylglycinamidine synthase 0.87 2
Dickeya dadantii 3937 0.95 DDA3937_RS18310 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.98 DDA3937_RS15655 phosphoribosylformylglycinamidine synthase 0.89 9
Pectobacterium carotovorum WPP14 0.93 HER17_RS02895 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.89 HER17_RS05910 phosphoribosylformylglycinamidine synthase 0.93 46
Rahnella sp. WP5 0.91 EX31_RS03835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.83 EX31_RS21895 phosphoribosylformylglycinamidine synthase 0.91 55
Klebsiella michiganensis M5al 0.89 BWI76_RS04465 carbamoyl-phosphate synthase small subunit 0.81 BWI76_RS21265 phosphoribosylformylglycinamidine synthase 0.61 10
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3637 carbamoyl-phosphate synthase, small subunit 0.82 EX28DRAFT_0092 phosphoribosylformylglycinamidine synthase, single chain form
Serratia liquefaciens MT49 0.88 IAI46_03190 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.85 IAI46_19475 phosphoribosylformylglycinamidine synthase 0.60 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_03625 Carbamoyl-phosphate synthase small chain 0.82 OHPLBJKB_01150 Phosphoribosylformylglycinamidine synthase 0.81 3
Escherichia coli BW25113 0.88 b0032 carA carbamoyl-phosphate synthase small subunit (NCBI) 0.82 b2557 purL phosphoribosylformylglycinamidine synthase (NCBI) 0.85 30
Escherichia coli BL21 0.88 ECD_00036 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 0.83 ECD_02449 phosphoribosylformyl-glycineamide synthetase 0.86 7
Escherichia coli ECRC102 0.88 NIAGMN_08795 carA carbamoyl phosphate synthase small subunit 0.83 NIAGMN_19240 purL phosphoribosylformylglycinamidine synthase
Escherichia coli ECRC62 0.88 BNILDI_08325 carA carbamoyl phosphate synthase small subunit 0.83 BNILDI_11945 purL phosphoribosylformylglycinamidine synthase 0.93 9
Escherichia coli ECRC98 0.88 JDDGAC_14540 carA carbamoyl phosphate synthase small subunit 0.83 JDDGAC_25135 purL phosphoribosylformylglycinamidine synthase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF214 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.82 GFF2459 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) low > 78
Escherichia coli ECRC100 0.88 OKFHMN_10945 carA carbamoyl phosphate synthase small subunit 0.83 OKFHMN_21470 purL phosphoribosylformylglycinamidine synthase 0.90 13
Escherichia coli ECOR27 0.88 NOLOHH_03275 carA carbamoyl phosphate synthase small subunit 0.82 NOLOHH_13145 purL phosphoribosylformylglycinamidine synthase 0.93 10
Escherichia coli ECOR38 0.88 HEPCGN_08930 carA carbamoyl phosphate synthase small subunit 0.82 HEPCGN_20615 purL phosphoribosylformylglycinamidine synthase 0.85 39
Escherichia coli ECRC99 0.88 KEDOAH_17210 carA carbamoyl phosphate synthase small subunit 0.83 KEDOAH_06750 purL phosphoribosylformylglycinamidine synthase
Escherichia coli ECRC101 0.88 MCAODC_01460 carA carbamoyl phosphate synthase small subunit 0.83 MCAODC_12000 purL phosphoribosylformylglycinamidine synthase low > 87
Escherichia fergusonii Becca 0.88 EFB2_04013 Carbamoyl-phosphate synthase small chain 0.82 EFB2_01339 Phosphoribosylformylglycinamidine synthase low > 86
Escherichia coli Nissle 1917 0.88 ECOLIN_RS00175 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.82 ECOLIN_RS14470 phosphoribosylformylglycinamidine synthase 0.70 47
Enterobacter sp. TBS_079 0.85 MPMX20_00739 Carbamoyl-phosphate synthase small chain 0.82 MPMX20_03426 Phosphoribosylformylglycinamidine synthase 0.87 15
Pantoea sp. MT58 0.84 IAI47_16120 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.81 IAI47_04930 phosphoribosylformylglycinamidine synthase 0.87 31
Erwinia tracheiphila SCR3 0.84 LU632_RS02755 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.80 LU632_RS17975 purL phosphoribosylformylglycinamidine synthase 0.94 4
Vibrio cholerae E7946 ATCC 55056 0.82 CSW01_12105 carbamoyl-phosphate synthase small subunit 0.74 CSW01_04470 phosphoribosylformylglycinamidine synthase 0.56 24
Shewanella amazonensis SB2B 0.79 Sama_2504 carbamoyl phosphate synthase small subunit (RefSeq) 0.70 Sama_2350 phosphoribosylformylglycinamidine synthase (RefSeq) 0.76 28
Shewanella loihica PV-4 0.78 Shew_2839 carbamoyl phosphate synthase small subunit (RefSeq) 0.70 Shew_1301 phosphoribosylformylglycinamidine synthase (RefSeq) 0.89 27
Shewanella oneidensis MR-1 0.76 SO1141 carA carbamoyl-phosphate synthase, small subunit (NCBI ptt file) 0.69 SO3287 purL phosphoribosylformylglycinamidine synthase (NCBI ptt file) 0.93 4
Shewanella sp. ANA-3 0.74 Shewana3_0967 carbamoyl phosphate synthase small subunit (RefSeq) 0.70 Shewana3_1240 phosphoribosylformylglycinamidine synthase (RefSeq) 0.93 18
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_0615 carbamoyl-phosphate synthase, small subunit 0.62 B158DRAFT_2244 phosphoribosylformylglycinamidine synthase, single chain form
Alteromonas macleodii MIT1002 0.72 MIT1002_01466 Carbamoyl-phosphate synthase small chain 0.68 MIT1002_01027 Phosphoribosylformylglycinamidine synthase 0.94 42
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_05635 carbamoyl phosphate synthase small subunit 0.64 AO353_04485 phosphoribosylformylglycinamidine synthase
Pseudomonas stutzeri RCH2 0.71 Psest_0967 carbamoyl-phosphate synthase, small subunit 0.64 Psest_3159 phosphoribosylformylglycinamidine synthase, single chain form
Pseudomonas sp. S08-1 0.71 OH686_17075 Carbamoyl-phosphate synthase small chain 0.64 OH686_17630 phosphoribosylformylglycinamidine synthase
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3365 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.64 Pf6N2E2_5432 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_5100 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.64 PfGW456L13_4835 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_07485 carbamoyl phosphate synthase small subunit 0.64 AO356_17520 phosphoribosylformylglycinamidine synthase
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1173 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.64 Pf1N1B4_887 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.64 Psyr_1269 phosphoribosylformylglycinamidine synthase
Pseudomonas putida KT2440 0.70 PP_4724 Carbamoyl-phosphate synthase small chain 0.64 PP_1037 Phosphoribosylformylglycinamidine synthase
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.64 Psyr_1269 phosphoribosylformylglycinamidine synthase
Pseudomonas simiae WCS417 0.70 PS417_24045 carbamoyl phosphate synthase small subunit 0.64 PS417_23020 phosphoribosylformylglycinamidine synthase
Marinobacter adhaerens HP15 0.70 HP15_3078 carbamoyl-phosphate synthase small chain 0.62 HP15_1239 phosphoribosylformylglycinamidine synthase
Pseudomonas fluorescens SBW25 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.64 PFLU_RS24685 phosphoribosylformylglycinamidine synthase
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.64 PFLU_RS24685 phosphoribosylformylglycinamidine synthase
Pseudomonas sp. RS175 0.70 PFR28_00076 Carbamoyl-phosphate synthase small chain 0.64 PFR28_03518 Phosphoribosylformylglycinamidine synthase
Dechlorosoma suillum PS 0.68 Dsui_3065 carbamoyl-phosphate synthase, small subunit 0.56 Dsui_2892 phosphoribosylformylglycinamidine synthase, single chain form
Acinetobacter radioresistens SK82 0.68 MPMX26_00767 Carbamoyl-phosphate synthase small chain 0.54 MPMX26_02183 Phosphoribosylformylglycinamidine synthase 0.74 29
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS13520 carbamoyl phosphate synthase small subunit 0.55 RR42_RS09140 phosphoribosylformylglycinamidine synthase
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS06920 carbamoyl phosphate synthase small subunit 0.57 HSERO_RS11190 phosphoribosylformylglycinamidine synthase
Rhodanobacter denitrificans MT42 0.65 LRK55_RS17850 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.53 LRK55_RS04500 phosphoribosylformylglycinamidine synthase
Lysobacter sp. OAE881 0.65 ABIE51_RS11625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.49 ABIE51_RS04505 phosphoribosylformylglycinamidine synthase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.2914.1 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.48 Xcc-8004.4439.1 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS17995 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.53 LRK54_RS04720 phosphoribosylformylglycinamidine synthase
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS14150 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.53 ABZR87_RS12730 phosphoribosylformylglycinamidine synthase
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS05605 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.52 ABZR86_RS19235 phosphoribosylformylglycinamidine synthase
Acidovorax sp. GW101-3H11 0.64 Ac3H11_435 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.51 Ac3H11_539 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)
Ralstonia solanacearum PSI07 0.64 RPSI07_RS15245 carbamoyl-phosphate synthase small subunit 0.53 RPSI07_RS16190 phosphoribosylformylglycinamidine synthase
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02200 carbamoyl-phosphate synthase small subunit 0.52 RALBFv3_RS01285 phosphoribosylformylglycinamidine synthase
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS04775 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.54 QEN71_RS21920 phosphoribosylformylglycinamidine synthase
Ralstonia solanacearum UW163 0.64 UW163_RS15510 carbamoyl-phosphate synthase small subunit 0.52 UW163_RS14595 phosphoribosylformylglycinamidine synthase
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_07300 carbamoyl phosphate synthase small subunit 0.53 OKGIIK_11505 purL phosphoribosylformylglycinamidine synthase 0.79 10
Ralstonia solanacearum GMI1000 0.63 RS_RS07620 carbamoyl-phosphate synthase small subunit 0.53 RS_RS08710 phosphoribosylformylglycinamidine synthase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF4899 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.51 GFF4566 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)
Variovorax sp. OAS795 0.63 ABID97_RS17090 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.51 ABID97_RS15675 phosphoribosylformylglycinamidine synthase
Variovorax sp. SCN45 0.63 GFF377 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.51 GFF1324 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04402 carbamoyl-phosphate synthase small subunit 0.55 H281DRAFT_00909 phosphoribosylformylglycinamidine synthase
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS14195 carbamoyl phosphate synthase small subunit 0.55 BPHYT_RS09515 phosphoribosylformylglycinamidine synthase 0.72 4
Paraburkholderia graminis OAS925 0.62 ABIE53_003005 carbamoyl-phosphate synthase small subunit 0.55 ABIE53_002141 phosphoribosylformylglycinamidine synthase
Castellaniella sp019104865 MT123 0.59 ABCV34_RS15505 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.50 ABCV34_RS04940 phosphoribosylformylglycinamidine synthase
Fusobacterium nucleatum SB010 0.40 HUW76_08755 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.06 HUW76_05155 phosphoribosylformylglycinamidine synthase low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS15240 carbamoyl phosphate synthase small subunit 0.26 CA265_RS05195 phosphoribosylformylglycinamidine synthase
Bifidobacterium breve UCC2003 0.39 BBR_RS13630 carbamoyl-phosphate synthase small subunit 0.06 BBR_RS13445 phosphoribosylformylglycinamidine synthase low > 34
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_0226 carbamoyl-phosphate synthase, small subunit 0.25 Echvi_4428 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
Bacteroides ovatus ATCC 8483 0.34 BACOVA_03753 carbamoyl-phosphate synthase, small subunit 0.25 BACOVA_04462 putative phosphoribosylformylglycinamidine synthase low > 94
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS20670 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.25 ABI39_RS00405 phosphoribosylformylglycinamidine synthase low > 72
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS06875 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.25 HMPREF1058_RS07955 phosphoribosylformylglycinamidine synthase low > 67
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS01295 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.26 HMPREF1078_RS04325 phosphoribosylformylglycinamidine synthase low > 61
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS16070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.24 HMPREF1181_RS05605 phosphoribosylformylglycinamidine synthase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.33 BT0556 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) 0.25 BT1733 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) low > 81

Not shown: 23 genomes with orthologs for DZA65_RS19385 only; 0 genomes with orthologs for DZA65_RS16830 only