Conservation of cofitness between CSW01_04865 and CSW01_19520 in Vibrio cholerae E7946 ATCC 55056

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 CSW01_19520 chemotaxis response regulator protein-glutamate methylesterase 0.39 19
Pantoea agglomerans CFBP13505 P0401 0.85 PagCFBP13505_RS03285 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 PagCFBP13505_RS02210 chemotaxis response regulator protein-glutamate methylesterase low > 74
Pantoea sp. MT58 0.85 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 IAI47_08330 chemotaxis response regulator protein-glutamate methylesterase low > 76
Dickeya dianthicola ME23 0.84 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 DZA65_RS14055 chemotaxis response regulator protein-glutamate methylesterase low > 75
Dickeya dadantii 3937 0.84 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 DDA3937_RS13525 chemotaxis response regulator protein-glutamate methylesterase — —
Dickeya dianthicola 67-19 0.83 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 HGI48_RS13570 chemotaxis response regulator protein-glutamate methylesterase — —
Pectobacterium carotovorum WPP14 0.83 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 HER17_RS08120 chemotaxis response regulator protein-glutamate methylesterase low > 75
Shewanella amazonensis SB2B 0.82 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.45 Sama_3499 protein-glutamate methylesterase (RefSeq) low > 62
Rahnella sp. WP5 0.82 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 EX31_RS11360 chemotaxis response regulator protein-glutamate methylesterase low > 89
Serratia liquefaciens MT49 0.82 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 IAI46_16015 chemotaxis response regulator protein-glutamate methylesterase low > 86
Shewanella loihica PV-4 0.82 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.48 Shew_0109 response regulator receiver modulated CheB methylesterase (RefSeq) low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.44 OHPLBJKB_01845 Chemotaxis response regulator protein-glutamate methylesterase — —
Escherichia coli Nissle 1917 0.82 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 ECOLIN_RS10755 protein-glutamate methylesterase/protein glutamine deamidase — —
Escherichia coli BL21 0.82 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.44 ECD_01854 fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA — —
Escherichia coli BW25113 0.82 b0636 ybeA hypothetical protein (NCBI) 0.44 b1883 cheB chemotaxis-specific methylesterase (NCBI) low > 76
Shewanella sp. ANA-3 0.82 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.41 Shewana3_2213 response regulator receiver modulated CheB methylesterase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.81 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.41 SO2126 cheB-1 protein-glutamate methylesterase CheB (NCBI ptt file) low > 76
Escherichia coli ECOR38 0.81 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 HEPCGN_04570 cheB protein-glutamate methylesterase/protein glutamine deamidase low > 88
Escherichia coli ECRC100 0.81 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 OKFHMN_26150 cheB protein-glutamate methylesterase/protein glutamine deamidase low > 79
Escherichia coli ECRC98 0.81 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 JDDGAC_00725 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Escherichia coli ECRC101 0.81 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 MCAODC_19255 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Escherichia fergusonii Becca 0.81 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.44 EFB2_02060 Protein-glutamate methylesterase/protein-glutamine glutaminase low > 86
Escherichia coli ECRC62 0.81 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 BNILDI_15380 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Escherichia coli ECOR27 0.81 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 NOLOHH_16590 cheB protein-glutamate methylesterase/protein glutamine deamidase low > 76
Escherichia coli ECRC99 0.81 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 KEDOAH_01955 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Erwinia tracheiphila SCR3 0.81 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 LU632_RS13525 chemotaxis response regulator protein-glutamate methylesterase low > 74
Escherichia coli ECRC102 0.81 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 NIAGMN_01910 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.44 EX28DRAFT_0673 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain — —
Enterobacter sp. TBS_079 0.81 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.45 MPMX20_02787 Protein-glutamate methylesterase/protein-glutamine glutaminase low > 85
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_02460 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 IJEDHG_22020 cheB chemotaxis response regulator protein-glutamate methylesterase low > 61
Erwinia amylovora T8 0.80 OLJFJH_17220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 OLJFJH_12760 chemotaxis response regulator protein-glutamate methylesterase low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.43 GFF1664 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) low > 78
Pseudomonas sp. S08-1 0.66 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.35 OH686_21840 Chemotaxis response regulator protein-glutamate methylesterase CheB low > 80
Pseudomonas sp. RS175 0.65 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.37 PFR28_01434 Protein-glutamate methylesterase/protein-glutamine glutaminase low > 88
Pseudomonas stutzeri RCH2 0.65 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.37 Psest_0653 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain — —
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_4366 Protein of unknown function DUF163 0.37 Psyr_0781 Protein-glutamate methylesterase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_4366 Protein of unknown function DUF163 0.37 Psyr_0781 Protein-glutamate methylesterase low > 86
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.38 Pf6N2E2_1775 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) low > 103
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_15305 50S rRNA methyltransferase 0.37 AO356_29840 chemotaxis protein CheY low > 104
Pseudomonas aeruginosa PA14 0.64 IKLFDK_20650 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 IKLFDK_24680 Protein-glutamate methylesterase/protein-glutamine glutaminase 2 low > 100
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 PFLU_RS24965 chemotaxis response regulator protein-glutamate methylesterase low > 109
Pseudomonas fluorescens SBW25 0.64 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 PFLU_RS24965 chemotaxis response regulator protein-glutamate methylesterase low > 109
Pseudomonas lactucae CFBP13502 0.64 GEMAOFIL_05099 Ribosomal RNA large subunit methyltransferase H 0.36 GEMAOFIL_03221 Protein-glutamate methylesterase/protein-glutamine glutaminase — —
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.46 ABZR86_RS22205 chemotaxis response regulator protein-glutamate methylesterase low > 74
Rhodanobacter denitrificans FW104-10B01 0.60 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 LRK54_RS13670 chemotaxis response regulator protein-glutamate methylesterase low > 59
Rhodanobacter denitrificans MT42 0.60 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 LRK55_RS13410 chemotaxis response regulator protein-glutamate methylesterase low > 63
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 OKGIIK_02915 cheB Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains low > 52
Rhodanobacter sp000427505 FW510-R12 0.59 LRK53_RS07250 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 LRK53_RS14905 chemotaxis response regulator protein-glutamate methylesterase low > 59
Lysobacter sp. OAE881 0.56 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.46 ABIE51_RS16960 chemotaxis response regulator protein-glutamate methylesterase low > 62
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 QEN71_RS28985 chemotaxis response regulator protein-glutamate methylesterase low > 153
Ralstonia solanacearum PSI07 0.49 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 RPSI07_RS06230 chemotaxis response regulator protein-glutamate methylesterase low > 81
Ralstonia solanacearum GMI1000 0.49 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 RS_RS23895 chemotaxis response regulator protein-glutamate methylesterase — —
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH 0.46 Xcc-8004.2888.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) — —
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS17780 50S rRNA methyltransferase 0.42 HSERO_RS10125 chemotaxis protein low > 78
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS04710 50S rRNA methyltransferase 0.43 RR42_RS35785 chemotaxis protein low > 128
Paraburkholderia graminis OAS925 0.48 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.43 ABIE53_000119 two-component system chemotaxis response regulator CheB — —
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.43 BPHYT_RS18970 chemotaxis protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.43 H281DRAFT_05747 two-component system, chemotaxis family, response regulator CheB low > 103
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 RALBFv3_RS17415 chemotaxis response regulator protein-glutamate methylesterase low > 76
Ralstonia solanacearum UW163 0.48 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 UW163_RS21735 chemotaxis response regulator protein-glutamate methylesterase — —
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 ABZR87_RS17990 chemotaxis response regulator protein-glutamate methylesterase low > 80
Castellaniella sp019104865 MT123 0.47 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 ABCV34_RS05815 chemotaxis response regulator protein-glutamate methylesterase low > 48
Variovorax sp. SCN45 0.44 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.44 GFF5767 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) low > 127
Dechlorosoma suillum PS 0.44 Dsui_0451 hypothetical protein 0.44 Dsui_1713 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF4529 LSU m3Psi1915 methyltransferase RlmH 0.42 GFF1479 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) low > 90
Acidovorax sp. GW101-3H11 0.43 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH 0.40 Ac3H11_1425 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) low > 79
Methylophilus sp. DMC18 0.42 GFF827 Ribosomal RNA large subunit methyltransferase H 0.42 GFF753 Protein-glutamate methylesterase/protein-glutamine glutaminase low > 43
Rhizobium sp. OAE497 0.30 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 ABIE40_RS02890 protein-glutamate O-methylesterase CheB low > 107
Azospirillum brasilense Sp245 0.29 AZOBR_RS04060 50S rRNA methyltransferase 0.42 AZOBR_RS14260 chemotaxis protein low > 97
Azospirillum sp. SherDot2 0.29 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H 0.40 MPMX19_01953 Protein-glutamate methylesterase/protein-glutamine glutaminase low > 112
Phaeobacter inhibens DSM 17395 0.29 PGA1_c29750 putative ribosomal RNA large subunit methyltransferase 0.18 PGA1_262p02160 putative chemotaxis response regulator protein-glutamate methylesterase low > 62
Sinorhizobium meliloti 1021 0.29 SMc03781 rRNA large subunit methyltransferase 0.41 SMc03010 chemotaxis-specific methylesterase low > 103
Magnetospirillum magneticum AMB-1 0.27 AMB_RS20655 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.29 AMB_RS01635 chemotaxis response regulator protein-glutamate methylesterase low > 64
Caulobacter crescentus NA1000 0.25 CCNA_03546 rRNA large subunit methyltransferase 0.43 CCNA_00445 receiver domain-glutamate methylesterase cheBI low > 66
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_03546 rRNA large subunit methyltransferase 0.43 CCNA_00445 receiver domain-glutamate methylesterase cheBI low > 67
Rhodopseudomonas palustris CGA009 0.23 TX73_000870 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 TX73_000705 chemotaxis response regulator protein-glutamate methylesterase low > 86
Agrobacterium fabrum C58 0.22 Atu2776 hypothetical protein 0.40 Atu0519 protein-glutamate methylesterase low > 89
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_0845 protein of unknown function DUF163 (RefSeq) 0.36 DvMF_0465 response regulator receiver modulated CheB methylesterase (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU1254 conserved hypothetical protein (TIGR) 0.37 DVU1596 cheB-1 protein-glutamate methylesterase CheB (TIGR) low > 55
Bosea sp. OAE506 0.20 ABIE41_RS07565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 ABIE41_RS01665 chemotaxis response regulator protein-glutamate methylesterase low > 77

Not shown: 31 genomes with orthologs for CSW01_04865 only; 5 genomes with orthologs for CSW01_19520 only