| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_07570 | | nucleotide-binding protein | 1.0 | CSW01_18080 | | ABC transporter permease | 0.59 | 5 |
| Shewanella sp. ANA-3 | 0.64 | Shewana3_0782 | | putative nucleotide-binding protein (RefSeq) | 0.20 | Shewana3_1539 | | hypothetical protein (RefSeq) | low | > 73 |
| Klebsiella michiganensis M5al | 0.64 | BWI76_RS06410 | | YajQ family cyclic di-GMP-binding protein | 0.24 | BWI76_RS06955 | | sugar ABC transporter permease | low | > 92 |
| Shewanella oneidensis MR-1 | 0.64 | SO3815 | | conserved hypothetical protein (NCBI ptt file) | 0.18 | SO2926 | | ABC transporter, permease, putative (NCBI ptt file) | 0.27 | 74 |
| Shewanella amazonensis SB2B | 0.63 | Sama_2557 | | putative nucleotide-binding protein (RefSeq) | 0.21 | Sama_1487 | | ABC transporter, permease, putative (RefSeq) | low | > 62 |
| Escherichia coli ECRC98 | 0.62 | JDDGAC_12045 | yajQ | nucleotide binding protein YajQ | 0.24 | JDDGAC_11610 | ybbP | Uncharacterized ABC transporter permease YbbP | low | > 87 |
| Escherichia fergusonii Becca | 0.62 | EFB2_03631 | | hypothetical protein | 0.24 | EFB2_03559 | | hypothetical protein | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.62 | OHPLBJKB_03250 | | hypothetical protein | 0.24 | OHPLBJKB_03178 | | hypothetical protein | low | > 74 |
| Escherichia coli ECRC99 | 0.62 | KEDOAH_19575 | yajQ | nucleotide binding protein YajQ | 0.24 | KEDOAH_20005 | ybbP | Uncharacterized ABC transporter permease YbbP | — | — |
| Escherichia coli BW25113 | 0.62 | b0426 | yajQ | orf, hypothetical protein (VIMSS) | 0.24 | b0496 | ybbP | predicted inner membrane protein (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.62 | NIAGMN_06445 | yajQ | nucleotide binding protein YajQ | 0.24 | NIAGMN_06015 | ybbP | Uncharacterized ABC transporter permease YbbP | low | > 80 |
| Escherichia coli ECRC100 | 0.62 | OKFHMN_08390 | yajQ | nucleotide binding protein YajQ | 0.24 | OKFHMN_07965 | ybbP | Uncharacterized ABC transporter permease YbbP | — | — |
| Escherichia coli ECOR27 | 0.62 | NOLOHH_01340 | yajQ | nucleotide binding protein YajQ | 0.24 | NOLOHH_00955 | ybbP | Uncharacterized ABC transporter permease YbbP | low | > 76 |
| Dickeya dianthicola 67-19 | 0.62 | HGI48_RS05620 | | YajQ family cyclic di-GMP-binding protein | 0.23 | HGI48_RS06020 | | ABC transporter permease | — | — |
| Escherichia coli ECOR38 | 0.62 | HEPCGN_07020 | yajQ | nucleotide binding protein YajQ | 0.24 | HEPCGN_06595 | ybbP | Uncharacterized ABC transporter permease YbbP | low | > 88 |
| Dickeya dadantii 3937 | 0.62 | DDA3937_RS05560 | | YajQ family cyclic di-GMP-binding protein | 0.23 | DDA3937_RS05970 | | ABC transporter permease | low | > 74 |
| Escherichia coli ECRC101 | 0.62 | MCAODC_27615 | yajQ | nucleotide binding protein YajQ | 0.24 | MCAODC_27180 | ybbP | Uncharacterized ABC transporter permease YbbP | low | > 87 |
| Enterobacter asburiae PDN3 | 0.62 | EX28DRAFT_2545 | | Uncharacterized protein conserved in bacteria | 0.25 | EX28DRAFT_2463 | | Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | low | > 76 |
| Escherichia coli ECRC62 | 0.62 | BNILDI_22755 | yajQ | nucleotide binding protein YajQ | 0.24 | BNILDI_22375 | ybbP | Uncharacterized ABC transporter permease YbbP | low | > 75 |
| Escherichia coli BL21 | 0.62 | ECD_00374 | | phage Phi6 host factor, ATP/GTP binding protein | 0.24 | ECD_00447 | | putative ABC transporter permease | low | > 61 |
| Escherichia coli Nissle 1917 | 0.62 | ECOLIN_RS02565 | | nucleotide binding protein YajQ | 0.24 | ECOLIN_RS02930 | | putative ABC transporter permease subunit YbbP | — | — |
| Enterobacter sp. TBS_079 | 0.62 | MPMX20_01017 | | hypothetical protein | 0.25 | MPMX20_01094 | | hypothetical protein | low | > 85 |
| Serratia liquefaciens MT49 | 0.62 | IAI46_04955 | | YajQ family cyclic di-GMP-binding protein | 0.25 | IAI46_05355 | | ABC transporter permease | low | > 87 |
| Dickeya dianthicola ME23 | 0.62 | DZA65_RS05945 | | YajQ family cyclic di-GMP-binding protein | 0.23 | DZA65_RS06365 | | ABC transporter permease | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.62 | HER17_RS15905 | | YajQ family cyclic di-GMP-binding protein | 0.25 | HER17_RS15490 | | ABC transporter permease | low | > 75 |
| Kangiella aquimarina DSM 16071 | 0.62 | B158DRAFT_0029 | | Uncharacterized protein conserved in bacteria | 0.20 | B158DRAFT_2226 | | Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | low | > 40 |
| Rahnella sp. WP5 | 0.61 | EX31_RS22185 | | YajQ family cyclic di-GMP-binding protein | 0.24 | EX31_RS22615 | | ABC transporter permease | low | > 89 |
| Klebsiella pneumoniae MKP103 | 0.61 | KDGMDA_14505 | | YajQ family cyclic di-GMP-binding protein | 0.23 | KDGMDA_14985 | | Efflux ABC transporter permease protein | low | > 95 |
| Shewanella loihica PV-4 | 0.61 | Shew_2893 | | nucleotide-binding protein (RefSeq) | 0.20 | Shew_2401 | | hypothetical protein (RefSeq) | low | > 60 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.60 | GFF4337 | | FIG001943: hypothetical protein YajQ | 0.23 | GFF4414 | | FIG00809136: hypothetical protein | low | > 78 |
| Alteromonas macleodii MIT1002 | 0.60 | MIT1002_04129 | | putative nucleotide-binding protein | 0.20 | MIT1002_01416 | | outer membrane-specific lipoprotein transporter subunit LolE | low | > 70 |
| Erwinia tracheiphila SCR3 | 0.60 | LU632_RS18450 | | YajQ family cyclic di-GMP-binding protein | 0.24 | LU632_RS15255 | | ABC transporter permease | low | > 73 |
| Pantoea agglomerans CFBP13505 P0401 | 0.60 | PagCFBP13505_RS10485 | | YajQ family cyclic di-GMP-binding protein | 0.23 | PagCFBP13505_RS10850 | | ABC transporter permease | — | — |
| Pantoea sp. MT58 | 0.60 | IAI47_14710 | | YajQ family cyclic di-GMP-binding protein | 0.23 | IAI47_14360 | | ABC transporter permease | low | > 76 |
| Erwinia tracheiphila HP pepo 2.2 | 0.60 | IJEDHG_16340 | | YajQ family cyclic di-GMP-binding protein | 0.24 | IJEDHG_01030 | | ABC transporter permease | low | > 61 |
| Marinobacter adhaerens HP15 | 0.58 | HP15_2364 | | nucleotide-binding protein | 0.21 | HP15_1386 | | ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | low | > 73 |
| Pseudomonas aeruginosa PA14 | 0.55 | IKLFDK_02120 | | YajQ family cyclic di-GMP-binding protein | 0.18 | IKLFDK_14520 | | ABC transporter permease | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.55 | DQ20_RS56960 | | YajQ family cyclic di-GMP-binding protein | 0.17 | DQ20_RS32895 | | ABC transporter permease | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.55 | DY961_RS24510 | | YajQ family cyclic di-GMP-binding protein | 0.17 | DY961_RS02700 | | ABC transporter permease | low | > 100 |
| Ralstonia solanacearum PSI07 | 0.54 | RPSI07_RS12140 | | YajQ family cyclic di-GMP-binding protein | 0.16 | RPSI07_RS14190 | | ABC transporter permease | — | — |
| Pseudomonas sp. S08-1 | 0.53 | OH686_08210 | | UPF0234 protein Yitk | 0.18 | OH686_01800 | | ABC transporter, fused permease protein | low | > 80 |
| Ralstonia solanacearum UW163 | 0.53 | UW163_RS08465 | | YajQ family cyclic di-GMP-binding protein | 0.16 | UW163_RS10605 | | ABC transporter permease | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.53 | RALBFv3_RS05160 | | YajQ family cyclic di-GMP-binding protein | 0.16 | RALBFv3_RS03120 | | ABC transporter permease | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS12780 | | nucleotide-binding protein | 0.16 | RS_RS10490 | | ABC transporter permease | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.53 | ABZR87_RS00820 | | YajQ family cyclic di-GMP-binding protein | 0.17 | ABZR87_RS15020 | | ABC transporter permease | low | > 80 |
| Pseudomonas lactucae CFBP13502 | 0.52 | GEMAOFIL_04654 | | hypothetical protein | 0.20 | GEMAOFIL_01812 | | hypothetical protein | low | > 96 |
| Pseudomonas putida KT2440 | 0.52 | PP_1352 | | UPF0234 protein PP_1352 | 0.19 | PP_2316 | | putative ABC transporter, permease protein | low | > 96 |
| Pseudomonas simiae WCS417 | 0.52 | PS417_22510 | | nucleotide-binding protein | 0.20 | PS417_08395 | | ABC transporter permease | — | — |
| Pseudomonas sp. BP01 | 0.52 | JOY50_RS15035 | | YajQ family cyclic di-GMP-binding protein | 0.12 | JOY50_RS25835 | | ABC transporter permease | low | > 84 |
| Pseudomonas fluorescens SBW25-INTG | 0.52 | PFLU_RS24150 | | YajQ family cyclic di-GMP-binding protein | 0.19 | PFLU_RS08345 | | ABC transporter permease | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.52 | PFLU_RS24150 | | YajQ family cyclic di-GMP-binding protein | 0.19 | PFLU_RS08345 | | ABC transporter permease | low | > 109 |
| Dyella japonica UNC79MFTsu3.2 | 0.52 | ABZR86_RS00410 | | YajQ family cyclic di-GMP-binding protein | 0.08 | ABZR86_RS10175 | | FtsX-like permease family protein | low | > 74 |
| Pseudomonas orientalis W4I3 | 0.52 | QF045_RS24675 | | YajQ family cyclic di-GMP-binding protein | 0.19 | QF045_RS11115 | | ABC transporter permease | low | > 93 |
| Pseudomonas sp. RS175 | 0.52 | PFR28_03425 | | hypothetical protein | 0.20 | PFR28_00956 | | hypothetical protein | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.52 | Psest_1142 | | Uncharacterized protein conserved in bacteria | 0.18 | Psest_2338 | | Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | low | > 67 |
| Lysobacter sp. OAE881 | 0.52 | ABIE51_RS18465 | | YajQ family cyclic di-GMP-binding protein | 0.15 | ABIE51_RS18495 | | FtsX-like permease family protein | low | > 62 |
| Pseudomonas segetis P6 | 0.51 | MPMX49_03784 | | hypothetical protein | 0.20 | MPMX49_02656 | | hypothetical protein | low | > 75 |
| Pseudomonas fluorescens FW300-N1B4 | 0.51 | Pf1N1B4_650 | | FIG001943: hypothetical protein YajQ | 0.21 | Pf1N1B4_297 | | FIG00809136: hypothetical protein | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.51 | COO64_RS11975 | | YajQ family cyclic di-GMP-binding protein | 0.20 | COO64_RS09770 | | ABC transporter permease | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.51 | AO353_03640 | | nucleotide-binding protein | 0.19 | AO353_18995 | | ABC transporter permease | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.51 | PfGW456L13_1840 | | FIG001943: hypothetical protein YajQ | 0.20 | PfGW456L13_2217 | | FIG00809136: hypothetical protein | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_17960 | | nucleotide-binding protein | 0.20 | AO356_03235 | | ABC transporter permease | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.51 | Pf6N2E2_5522 | | FIG001943: hypothetical protein YajQ | 0.20 | Pf6N2E2_2478 | | FIG00809136: hypothetical protein | low | > 103 |
| Pseudomonas syringae pv. syringae B728a | 0.50 | Psyr_4087 | | Protein of unknown function DUF520 | 0.19 | Psyr_2066 | | Protein of unknown function DUF214:Fimbrial assembly | low | > 86 |
| Cupriavidus basilensis FW507-4G11 | 0.50 | RR42_RS17155 | | nucleotide-binding protein | 0.11 | RR42_RS05370 | | ABC transporter permease | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.50 | LRK53_RS13920 | | YajQ family cyclic di-GMP-binding protein | 0.13 | LRK53_RS05820 | | FtsX-like permease family protein | low | > 59 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.50 | Psyr_4087 | | Protein of unknown function DUF520 | 0.19 | Psyr_2066 | | Protein of unknown function DUF214:Fimbrial assembly | — | — |
| Acinetobacter baumannii LAC-4 | 0.50 | RR41_RS02860 | | YajQ family cyclic di-GMP-binding protein | 0.21 | RR41_RS08865 | | FtsX-like permease family protein | low | > 55 |
| Pseudomonas sp. DMC3 | 0.50 | GFF5198 | | hypothetical protein | 0.21 | GFF4630 | | hypothetical protein | low | > 89 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.49 | H281DRAFT_04122 | | hypothetical protein | 0.15 | H281DRAFT_04537 | | putative ABC transport system permease protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.49 | OKGIIK_03500 | yajQ | YajQ family cyclic di-GMP-binding protein | 0.13 | OKGIIK_10965 | ybbP | ABC transporter permease | low | > 53 |
| Rhodanobacter denitrificans MT42 | 0.49 | LRK55_RS14390 | | YajQ family cyclic di-GMP-binding protein | 0.13 | LRK55_RS03875 | | FtsX-like permease family protein | low | > 63 |
| Paraburkholderia graminis OAS925 | 0.49 | ABIE53_003357 | | uncharacterized protein YajQ (UPF0234 family) | 0.16 | ABIE53_001560 | | putative ABC transport system permease protein | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS14675 | | YajQ family cyclic di-GMP-binding protein | 0.13 | LRK54_RS04105 | | FtsX-like permease family protein | low | > 59 |
| Burkholderia phytofirmans PsJN | 0.49 | BPHYT_RS15930 | | nucleotide-binding protein | 0.15 | BPHYT_RS06480 | | ABC transporter permease | — | — |
| Acidovorax sp. GW101-3H11 | 0.49 | Ac3H11_2620 | | FIG001943: hypothetical protein YajQ | 0.15 | Ac3H11_3795 | | ABC transporter, permease protein, putative | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.48 | Xcc-8004.4605.1 | | FIG001943: hypothetical protein YajQ | 0.08 | Xcc-8004.4289.1 | | ABC transporter, permease protein, putative | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.48 | MPMX26_02644 | | hypothetical protein | 0.18 | MPMX26_02338 | | hypothetical protein | low | > 36 |
| Paraburkholderia sabiae LMG 24235 | 0.48 | QEN71_RS02775 | | YajQ family cyclic di-GMP-binding protein | 0.16 | QEN71_RS24320 | | ABC transporter permease | — | — |
| Variovorax sp. OAS795 | 0.48 | ABID97_RS21685 | | YajQ family cyclic di-GMP-binding protein | 0.15 | ABID97_RS07595 | | FtsX-like permease family protein | — | — |
| Variovorax sp. SCN45 | 0.48 | GFF3099 | | UPF0234 protein Yitk | 0.15 | GFF5663 | | ABC transporter, fused permease protein | — | — |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS07165 | | nucleotide-binding protein | 0.15 | HSERO_RS09380 | | ABC transporter permease | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.45 | GFF292 | | FIG001943: hypothetical protein YajQ | 0.15 | GFF1178 | | ABC transporter, permease protein, putative | — | — |
| Azospirillum sp. SherDot2 | 0.44 | MPMX19_04413 | | hypothetical protein | 0.11 | MPMX19_02590 | | hypothetical protein | low | > 112 |
| Azospirillum brasilense Sp245 | 0.43 | AZOBR_RS21810 | | nucleotide-binding protein | 0.12 | AZOBR_RS02255 | | glycosyl transferase family 1 | low | > 97 |
| Dechlorosoma suillum PS | 0.40 | Dsui_3245 | | hypothetical protein | 0.17 | Dsui_2415 | | putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component | low | > 51 |
| Methylophilus sp. DMC18 | 0.40 | GFF650 | | hypothetical protein | 0.19 | GFF2147 | | hypothetical protein | low | > 43 |
| Desulfovibrio vulgaris Miyazaki F | 0.38 | DvMF_3058 | | putative nucleotide-binding protein (RefSeq) | 0.08 | DvMF_2222 | | protein of unknown function DUF214 (RefSeq) | low | > 51 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.36 | CA265_RS09840 | | YajQ family cyclic di-GMP-binding protein | 0.12 | CA265_RS01135 | | ABC transporter permease | low | > 88 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.34 | CA264_15545 | | YajQ family cyclic di-GMP-binding protein | 0.11 | CA264_05670 | | ABC transporter permease | low | > 74 |
Not shown: 7 genomes with orthologs for CSW01_07570 only; 16 genomes with orthologs for CSW01_18080 only