Conservation of cofitness between CSW01_10335 and CSW01_10580 in Vibrio cholerae E7946 ATCC 55056

83 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10335 RNA polymerase sigma factor FliA 1.0 CSW01_10580 flagellar biosynthesis protein FlhB 0.86 15
Shewanella oneidensis MR-1 0.59 SO3210 fliA RNA polymerase sigma-27 factor (NCBI ptt file) 0.54 SO3215 flhB flagellar biosynthetic protein FlhB (NCBI ptt file) 0.72 25
Alteromonas macleodii MIT1002 0.59 MIT1002_01103 Sigma-F factor 0.47 MIT1002_01098 Flagellar biosynthetic protein FlhB low > 70
Shewanella sp. ANA-3 0.59 Shewana3_1359 fliA flagellar biosynthesis sigma factor (RefSeq) 0.54 Shewana3_1355 flhB flagellar biosynthesis protein FlhB (RefSeq) 0.79 35
Shewanella loihica PV-4 0.58 Shew_1383 fliA flagellar biosynthesis sigma factor (RefSeq) 0.56 Shew_1379 flhB flagellar biosynthesis protein FlhB (RefSeq) 0.95 26
Shewanella amazonensis SB2B 0.57 Sama_2280 fliA flagellar biosynthesis sigma factor (RefSeq) 0.51 Sama_2284 flhB flagellar biosynthesis protein FlhB (RefSeq) 0.98 11
Pseudomonas sp. S08-1 0.54 OH686_02730 RNA polymerase sigma factor for flagellar operon 0.47 OH686_02755 flagellar biosynthetic protein FlhB 0.90 6
Pseudomonas aeruginosa PUPa3 0.54 DQ20_RS47155 fliA;inference=COORDINATES RNA polymerase sigma factor FliA 0.47 DQ20_RS47125 flhB;go_process=cilium flagellar biosynthesis protein FlhB 0.95 2
Pseudomonas aeruginosa MRSN321 0.54 DY961_RS05635 fliA;inference=COORDINATES RNA polymerase sigma factor FliA 0.47 DY961_RS05665 flhB;go_process=cilium flagellar biosynthesis protein FlhB 0.87 13
Pseudomonas aeruginosa PA14 0.54 IKLFDK_06920 flagellar biosynthesis sigma factor FliA 0.47 IKLFDK_06890 flagellar biosynthetic protein FlhB 0.77 23
Pseudomonas stutzeri RCH2 0.52 Psest_1740 RNA polymerase sigma factor, FliA/WhiG family 0.49 Psest_1735 flagellar biosynthetic protein FlhB 0.92 7
Marinobacter adhaerens HP15 0.52 HP15_2302 flagellar biosynthesis sigma factor FliA 0.42 HP15_2309 flagellar biosynthesis protein FlhB 0.91 2
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG 0.42 Psyr_3441 Flagellar biosynthetic protein FlhB 0.95 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG 0.42 Psyr_3441 Flagellar biosynthetic protein FlhB 0.84 1
Pseudomonas segetis P6 0.52 MPMX49_03127 RNA polymerase sigma factor FliA 0.46 MPMX49_03131 Flagellar biosynthetic protein FlhB 0.95 9
Pseudomonas orientalis W4I3 0.51 QF045_RS21835 RNA polymerase sigma factor FliA 0.42 QF045_RS21855 flagellar biosynthesis protein FlhB low > 93
Pseudomonas putida KT2440 0.51 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons 0.44 PP_4352 flagellin export apparatus, substrate specificity protein 0.91 8
Pseudomonas lactucae CFBP13502 0.51 GEMAOFIL_04138 RNA polymerase sigma factor FliA 0.41 GEMAOFIL_04143 Flagellar biosynthetic protein FlhB 0.88 8
Pseudomonas sp. RS175 0.51 PFR28_00852 RNA polymerase sigma factor FliA 0.42 PFR28_00848 Flagellar biosynthetic protein FlhB 0.86 24
Pseudomonas sp. BP01 0.51 JOY50_RS00585 fliA RNA polymerase sigma factor FliA 0.43 JOY50_RS00605 flhB flagellar biosynthesis protein FlhB 0.71 25
Pseudomonas fluorescens SBW25 0.51 PFLU_RS21660 RNA polymerase sigma factor FliA 0.41 PFLU_RS21695 flagellar biosynthesis protein FlhB 0.94 13
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS21660 RNA polymerase sigma factor FliA 0.41 PFLU_RS21695 flagellar biosynthesis protein FlhB 0.96 10
Pseudomonas simiae WCS417 0.51 PS417_19695 flagellar biosynthesis sigma factor 0.41 PS417_19725 flagellar biosynthesis protein FlhB 0.97 6
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_18785 flagellar biosynthesis sigma factor 0.40 AO353_18760 flagellar biosynthetic protein FlhB 0.83 10
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon 0.42 Pf6N2E2_2577 Flagellar biosynthesis protein FlhB 0.92 13
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_03730 flagellar biosynthesis sigma factor 0.42 AO356_03755 flagellar biosynthetic protein FlhB 0.95 7
Pseudomonas sp. DMC3 0.51 GFF2472 RNA polymerase sigma factor FliA 0.47 GFF2466 Flagellar biosynthetic protein FlhB 0.74 19
Pseudomonas fluorescens FW300-N1B4 0.51 Pf1N1B4_3626 RNA polymerase sigma factor for flagellar operon 0.47 Pf1N1B4_3621 Flagellar biosynthesis protein FlhB low > 87
Pseudomonas sp. SVBP6 0.51 COO64_RS25625 fliA RNA polymerase sigma factor FliA 0.47 COO64_RS21200 flhB flagellar biosynthesis protein FlhB 0.95 9
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_4331 RNA polymerase sigma factor for flagellar operon 0.46 PfGW456L13_4336 Flagellar biosynthesis protein FlhB low > 87
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_02830 fliA RNA polymerase sigma factor FliA 0.32 OKGIIK_02810 flhB flagellar biosynthesis protein FlhB 0.65 28
Rhodanobacter denitrificans MT42 0.47 LRK55_RS13320 RNA polymerase sigma factor FliA 0.35 LRK55_RS13300 flagellar biosynthesis protein FlhB 0.95 1
Rhodanobacter denitrificans FW104-10B01 0.47 LRK54_RS13580 RNA polymerase sigma factor FliA 0.35 LRK54_RS13560 flagellar biosynthesis protein FlhB 0.74 4
Rhodanobacter sp000427505 FW510-R12 0.47 LRK53_RS14995 RNA polymerase sigma factor FliA 0.33 LRK53_RS15015 flagellar biosynthesis protein FlhB 0.26 54
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS20265 RNA polymerase sigma factor FliA 0.37 ABZR86_RS20245 flagellar biosynthesis protein FlhB low > 74
Lysobacter sp. OAE881 0.44 ABIE51_RS16865 RNA polymerase sigma factor FliA 0.34 ABIE51_RS16845 flagellar biosynthesis protein FlhB 0.91 8
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS10160 flagellar biosynthesis sigma factor 0.36 HSERO_RS10140 flagellar biosynthesis protein FlhB 0.89 14
Dechlorosoma suillum PS 0.42 Dsui_1726 RNA polymerase sigma factor, FliA/WhiG family 0.39 Dsui_1722 flagellar biosynthetic protein FlhB 0.72 10
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS28940 RNA polymerase sigma factor FliA 0.35 QEN71_RS28960 flagellar biosynthesis protein FlhB 0.93 12
Methylophilus sp. DMC18 0.42 GFF1338 RNA polymerase sigma factor FliA 0.37 GFF1342 Flagellar biosynthetic protein FlhB low > 43
Paraburkholderia graminis OAS925 0.42 ABIE53_000108 RNA polymerase sigma factor for flagellar operon FliA 0.35 ABIE53_000114 flagellar biosynthetic protein FlhB 0.98 11
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_05756 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG 0.35 H281DRAFT_05752 flagellar biosynthetic protein FlhB 0.75 4
Dickeya dadantii 3937 0.41 DDA3937_RS13300 RNA polymerase sigma factor FliA 0.39 DDA3937_RS13510 flagellar type III secretion system protein FlhB 0.97 14
Rahnella sp. WP5 0.41 EX31_RS09450 RNA polymerase sigma factor FliA 0.29 EX31_RS11345 flagellar type III secretion system protein FlhB 0.63 26
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS18925 RNA polymerase sigma70 0.36 BPHYT_RS18945 flagellar biosynthesis protein FlhB 0.91 11
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF1428 RNA polymerase sigma factor for flagellar operon 0.28 GFF1432 Flagellar biosynthesis protein FlhB low > 90
Serratia liquefaciens MT49 0.41 IAI46_15785 RNA polymerase sigma factor FliA 0.35 IAI46_16000 flagellar type III secretion system protein FlhB low > 87
Dickeya dianthicola ME23 0.41 DZA65_RS13835 RNA polymerase sigma factor FliA 0.40 DZA65_RS14040 flagellar type III secretion system protein FlhB 0.98 7
Dickeya dianthicola 67-19 0.41 HGI48_RS13350 RNA polymerase sigma factor FliA 0.40 HGI48_RS13555 flagellar type III secretion system protein FlhB 0.86 7
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF1690 RNA polymerase sigma factor for flagellar operon 0.39 GFF1661 Flagellar biosynthesis protein FlhB 0.77 49
Enterobacter asburiae PDN3 0.40 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family 0.40 EX28DRAFT_0680 flagellar biosynthetic protein FlhB 0.78 7
Enterobacter sp. TBS_079 0.40 MPMX20_02847 RNA polymerase sigma factor FliA 0.39 MPMX20_02784 Flagellar biosynthetic protein FlhB 0.89 6
Erwinia tracheiphila HP pepo 2.2 0.40 IJEDHG_21960 fliA RNA polymerase sigma factor FliA 0.32 IJEDHG_22035 flhB flagellar biosynthesis protein FlhB low > 61
Pectobacterium carotovorum WPP14 0.40 HER17_RS08355 RNA polymerase sigma factor FliA 0.36 HER17_RS08135 flagellar type III secretion system protein FlhB 0.94 5
Escherichia fergusonii Becca 0.40 EFB2_02023 RNA polymerase sigma factor FliA 0.36 EFB2_02063 Flagellar biosynthetic protein FlhB low > 86
Escherichia coli ECRC99 0.40 KEDOAH_02310 fliA RNA polymerase sigma factor FliA 0.36 KEDOAH_01940 flhB flagellar biosynthesis protein FlhB — —
Escherichia coli ECRC62 0.40 BNILDI_15190 fliA RNA polymerase sigma factor FliA 0.36 BNILDI_15395 flhB flagellar biosynthesis protein FlhB low > 75
Escherichia coli ECRC101 0.40 MCAODC_19610 fliA RNA polymerase sigma factor FliA 0.36 MCAODC_19240 flhB flagellar biosynthesis protein FlhB 0.29 8
Erwinia tracheiphila SCR3 0.40 LU632_RS13785 RNA polymerase sigma factor FliA 0.32 LU632_RS13510 flhB flagellar type III secretion system protein FlhB low > 73
Escherichia coli ECRC98 0.40 JDDGAC_00370 fliA RNA polymerase sigma factor FliA 0.36 JDDGAC_00740 flhB flagellar biosynthesis protein FlhB 0.46 57
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS18040 RNA polymerase sigma factor FliA 0.37 ABZR87_RS18015 flagellar biosynthesis protein FlhB 0.96 5
Escherichia coli ECRC100 0.40 OKFHMN_25780 fliA RNA polymerase sigma factor FliA 0.36 OKFHMN_26165 flhB flagellar biosynthesis protein FlhB low > 79
Escherichia coli ECRC102 0.40 NIAGMN_02270 fliA RNA polymerase sigma factor FliA 0.36 NIAGMN_01895 flhB flagellar biosynthesis protein FlhB low > 80
Escherichia coli ECOR27 0.40 NOLOHH_16400 fliA RNA polymerase sigma factor FliA 0.36 NOLOHH_16605 flhB flagellar biosynthesis protein FlhB 0.89 32
Escherichia coli ECOR38 0.40 HEPCGN_04135 fliA RNA polymerase sigma factor FliA 0.36 HEPCGN_04585 flhB flagellar biosynthesis protein FlhB low > 88
Ralstonia solanacearum GMI1000 0.40 RS_RS23830 RNA polymerase sigma factor FliA 0.37 RS_RS23850 flagellar type III secretion system protein FlhB 0.38 8
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS17485 RNA polymerase sigma factor FliA 0.36 RALBFv3_RS17465 flagellar type III secretion system protein FlhB low > 76
Acidovorax sp. GW101-3H11 0.39 Ac3H11_1381 RNA polymerase sigma factor for flagellar operon 0.28 Ac3H11_1385 Flagellar biosynthesis protein FlhB low > 79
Escherichia coli BW25113 0.39 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) 0.36 b1880 flhB flagellar biosynthesis protein B (NCBI) 0.45 9
Ralstonia solanacearum UW163 0.39 UW163_RS21665 RNA polymerase sigma factor FliA 0.36 UW163_RS21685 flagellar type III secretion system protein FlhB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_01807 RNA polymerase sigma factor FliA 0.36 OHPLBJKB_01848 Flagellar biosynthetic protein FlhB low > 74
Escherichia coli Nissle 1917 0.39 ECOLIN_RS10975 RNA polymerase sigma factor FliA 0.36 ECOLIN_RS10740 flagellar biosynthesis protein FlhB low > 55
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS35750 DNA-directed RNA polymerase sigma-70 factor 0.37 RR42_RS35770 flagellar biosynthesis protein FlhB low > 128
Pantoea sp. MT58 0.39 IAI47_08160 RNA polymerase sigma factor FliA 0.35 IAI47_08345 flagellar type III secretion system protein FlhB 0.88 1
Pantoea agglomerans CFBP13505 P0401 0.39 PagCFBP13505_RS02055 RNA polymerase sigma factor FliA 0.35 PagCFBP13505_RS02225 flagellar type III secretion system protein FlhB 0.92 1
Ralstonia solanacearum PSI07 0.39 RPSI07_RS06165 RNA polymerase sigma factor FliA 0.37 RPSI07_RS06185 flagellar type III secretion system protein FlhB low > 81
Variovorax sp. SCN45 0.39 GFF5774 RNA polymerase sigma factor for flagellar operon 0.38 GFF5770 Flagellar biosynthesis protein FlhB low > 127
Erwinia amylovora T8 0.39 OLJFJH_12555 RNA polymerase sigma factor FliA 0.35 OLJFJH_09890 flagellar biosynthesis protein FlhB low > 58
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.2832.1 RNA polymerase sigma factor for flagellar operon 0.37 Xcc-8004.2827.1 Flagellar biosynthesis protein FlhB low > 74
Castellaniella sp019104865 MT123 0.37 ABCV34_RS05605 RNA polymerase sigma factor FliA 0.40 ABCV34_RS05800 flagellar biosynthesis protein FlhB 0.43 18
Sphingobium sp. HT1-2 0.30 GFF3722 RNA polymerase sigma factor for flagellar operon 0.33 GFF3741 Flagellar biosynthesis protein FlhB low > 95
Desulfovibrio vulgaris Miyazaki F 0.29 DvMF_2011 RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) 0.25 DvMF_2015 flhB flagellar biosynthesis protein FlhB (RefSeq) 0.74 36
Sphingomonas koreensis DSMZ 15582 0.29 Ga0059261_2081 RNA polymerase sigma factor, FliA/WhiG family 0.32 Ga0059261_2059 Flagellar biosynthesis pathway, component FlhB 0.73 20
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU3229 fliA RNA polymerase sigma factor for flagellar operon FliA (TIGR) 0.24 DVU3233 flhB flagellar biosynthetic protein FlhB (TIGR) 0.90 6

Not shown: 1 genomes with orthologs for CSW01_10335 only; 16 genomes with orthologs for CSW01_10580 only