Conservation of cofitness between CSW01_00850 and CSW01_05630 in Vibrio cholerae E7946 ATCC 55056

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00850 multidrug resistance protein 1.0 CSW01_05630 replication-associated recombination protein A 0.78 5
Shewanella sp. ANA-3 0.72 Shewana3_0371 acriflavin resistance protein (RefSeq) 0.63 Shewana3_2052 recombination factor protein RarA (RefSeq) low > 73
Shewanella amazonensis SB2B 0.71 Sama_3269 putative multidrug resistance protein (RefSeq) 0.61 Sama_1774 recombination factor protein RarA (RefSeq) low > 62
Rhodospirillum rubrum S1H 0.49 Rru_A3699 Acriflavin resistance protein (NCBI) 0.39 Rru_A2660 AAA ATPase, central region (NCBI) low > 58
Azospirillum brasilense Sp245 0.49 AZOBR_RS31320 acriflavine resistance protein B 0.40 AZOBR_RS06885 ATPase AAA low > 97
Magnetospirillum magneticum AMB-1 0.48 AMB_RS17260 acriflavine resistance protein B 0.39 AMB_RS17620 replication-associated recombination protein A low > 64
Pseudomonas segetis P6 0.48 MPMX49_03771 Multidrug efflux pump subunit AcrB 0.55 MPMX49_02534 Replication-associated recombination protein A low > 75
Rhodopseudomonas palustris CGA009 0.48 TX73_019545 MexW/MexI family multidrug efflux RND transporter permease subunit 0.40 TX73_016655 replication-associated recombination protein A low > 86
Azospirillum sp. SherDot2 0.48 MPMX19_05610 Efflux pump membrane transporter BepE 0.41 MPMX19_01528 Replication-associated recombination protein A low > 112
Pseudomonas simiae WCS417 0.47 PS417_22755 acriflavine resistance protein B 0.55 PS417_16480 recombination factor protein RarA low > 88
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS24405 multidrug efflux RND transporter permease subunit 0.55 PFLU_RS18520 replication-associated recombination protein A low > 109
Pseudomonas fluorescens SBW25 0.47 PFLU_RS24405 multidrug efflux RND transporter permease subunit 0.55 PFLU_RS18520 replication-associated recombination protein A low > 109
Pseudomonas sp. RS175 0.47 PFR28_03330 Multidrug efflux pump subunit AcrB 0.56 PFR28_02606 Replication-associated recombination protein A low > 88
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_18440 acriflavine resistance protein B 0.57 AO356_22185 recombination factor protein RarA low > 104
Pseudomonas sp. S08-1 0.47 OH686_17360 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.56 OH686_00270 Replication-associated recombination protein RarA low > 80
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_5614 RND multidrug efflux transporter; Acriflavin resistance protein 0.56 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase low > 103
Pseudomonas sp. BP01 0.47 JOY50_RS14955 multidrug efflux RND transporter permease subunit 0.57 JOY50_RS06525 replication-associated recombination protein A low > 84
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_720 RND multidrug efflux transporter; Acriflavin resistance protein 0.56 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase low > 87
Pseudomonas putida KT2440 0.46 PP_0906 putative Multidrug efflux RND transporter 0.57 PP_4002 DNA-dependent ATPase required for recombination low > 96
Pseudomonas sp. SVBP6 0.46 COO64_RS12055 multidrug efflux RND transporter permease subunit 0.57 COO64_RS24170 replication-associated recombination protein A low > 93
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_04000 acriflavine resistance protein B 0.55 AO353_27640 recombination factor protein RarA low > 101
Pseudomonas aeruginosa PUPa3 0.46 DQ20_RS57065 mexW;inference=COORDINATES multidrug efflux RND transporter permease subunit MexW 0.55 DQ20_RS35180 replication-associated recombination protein A low > 101
Pseudomonas aeruginosa PA14 0.46 IKLFDK_02225 multidrug efflux RND transporter permease subunit MexW 0.55 IKLFDK_13115 recombination factor protein RarA low > 98
Pseudomonas aeruginosa MRSN321 0.46 DY961_RS24615 mexW;inference=COORDINATES multidrug efflux RND transporter permease subunit MexW 0.55 DY961_RS04155 replication-associated recombination protein A low > 100
Pseudomonas sp. DMC3 0.46 GFF5069 Multidrug efflux pump subunit AcrB 0.56 GFF1532 Replication-associated recombination protein A low > 89
Marinobacter adhaerens HP15 0.46 HP15_3262 multidrug resistance protein 0.57 HP15_1817 recombination factor protein RarA low > 73
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_1771 RND multidrug efflux transporter; Acriflavin resistance protein 0.55 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase low > 87
Pseudomonas stutzeri RCH2 0.45 Psest_1153 Cation/multidrug efflux pump 0.55 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase low > 67
Variovorax sp. SCN45 0.45 GFF3509 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) => MexI of MexHI-OpmD system 0.47 GFF6034 Replication-associated recombination protein RarA low > 127
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26025 efflux RND transporter permease subunit 0.50 QEN71_RS03415 replication-associated recombination protein A low > 153
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS29560 acriflavine resistance protein B 0.49 BPHYT_RS05100 ATPase AAA low > 109
Xanthobacter sp. DMC5 0.40 GFF2738 Efflux pump membrane transporter BepE 0.41 GFF1351 Replication-associated recombination protein A — —
Dechlorosoma suillum PS 0.35 Dsui_1555 cation/multidrug efflux pump 0.48 Dsui_1694 AAA ATPase low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF4261 RND multidrug efflux transporter; Acriflavin resistance protein 0.38 GFF777 FIG065221: Holliday junction DNA helicase low > 90
Acidovorax sp. GW101-3H11 0.34 Ac3H11_482 RND multidrug efflux transporter; Acriflavin resistance protein 0.47 Ac3H11_1696 FIG065221: Holliday junction DNA helicase low > 79
Desulfovibrio vulgaris Hildenborough JW710 0.25 DVU0061 multidrug resistance protein, putative (TIGR) 0.30 DVU1686 ATPase, AAA family (TIGR) low > 55
Acinetobacter baumannii LAC-4 0.25 RR41_RS03865 multidrug efflux RND transporter permease subunit AdeJ 0.36 RR41_RS00275 replication-associated recombination protein A — —
Acinetobacter radioresistens SK82 0.24 MPMX26_00689 Multidrug resistance protein MexB 0.36 MPMX26_02987 Replication-associated recombination protein A low > 36
Methylophilus sp. DMC18 0.24 GFF1649 Efflux pump membrane transporter BepE 0.49 GFF351 Replication-associated recombination protein A low > 43
Enterobacter asburiae PDN3 0.24 EX28DRAFT_2496 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.72 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase low > 76
Klebsiella michiganensis M5al 0.24 BWI76_RS06775 multidrug efflux RND transporter permease subunit 0.73 BWI76_RS09670 recombination factor protein RarA low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_01261 Multidrug efflux pump subunit AcrB 0.73 OHPLBJKB_02776 Replication-associated recombination protein A low > 74
Escherichia coli ECOR38 0.24 HEPCGN_21140 acrD multidrug efflux RND transporter permease AcrD 0.73 HEPCGN_22950 rarA replication-associated recombination protein RarA low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF4246 RND efflux system, inner membrane transporter CmeB 0.73 GFF4896 FIG065221: Holliday junction DNA helicase low > 78
Escherichia coli BW25113 0.24 b2470 acrD aminoglycoside/multidrug efflux system (NCBI) 0.73 b0892 ycaJ recombination protein (NCBI) low > 76
Escherichia coli ECRC62 0.24 BNILDI_12460 acrD multidrug efflux RND transporter permease AcrD 0.72 BNILDI_20385 rarA replication-associated recombination protein RarA low > 75
Escherichia coli BL21 0.24 ECD_02361 aminoglycoside/multidrug efflux system 0.73 ECD_00896 recombination intermediate processing DNA-dependent ATPase low > 61
Escherichia fergusonii Becca 0.24 EFB2_01418 Multidrug efflux pump subunit AcrB 0.73 EFB2_03169 Replication-associated recombination protein A low > 86
Escherichia coli Nissle 1917 0.24 ECOLIN_RS14090 multidrug efflux RND transporter permease AcrD 0.73 ECOLIN_RS04745 replication-associated recombination protein RarA low > 55
Escherichia coli ECRC100 0.24 OKFHMN_21970 acrD multidrug efflux RND transporter permease AcrD 0.73 OKFHMN_05560 rarA replication-associated recombination protein RarA low > 79
Escherichia coli ECRC98 0.24 JDDGAC_25915 acrD multidrug efflux RND transporter permease AcrD 0.73 JDDGAC_09370 rarA replication-associated recombination protein RarA low > 87
Escherichia coli ECRC99 0.24 KEDOAH_06250 acrD multidrug efflux RND transporter permease AcrD 0.73 KEDOAH_22175 rarA replication-associated recombination protein RarA — —
Escherichia coli ECRC102 0.24 NIAGMN_19740 acrD multidrug efflux RND transporter permease AcrD 0.73 NIAGMN_03280 rarA replication-associated recombination protein RarA low > 80
Enterobacter sp. TBS_079 0.24 MPMX20_01064 Multidrug efflux pump subunit AcrB 0.72 MPMX20_01554 Replication-associated recombination protein A low > 85
Escherichia coli ECOR27 0.24 NOLOHH_13650 acrD multidrug efflux RND transporter permease AcrD 0.72 NOLOHH_22130 rarA replication-associated recombination protein RarA low > 76
Escherichia coli ECRC101 0.24 MCAODC_12500 acrD multidrug efflux RND transporter permease AcrD 0.73 MCAODC_24950 rarA replication-associated recombination protein RarA low > 87
Klebsiella pneumoniae MKP103 0.24 KDGMDA_14835 acriflavine resistance protein B 0.73 KDGMDA_17905 replication-associated recombination protein RarA low > 95
Paraburkholderia graminis OAS925 0.24 ABIE53_005788 multidrug efflux pump 0.49 ABIE53_001292 putative ATPase low > 113
Pseudomonas orientalis W4I3 0.24 QF045_RS16760 efflux RND transporter permease subunit 0.55 QF045_RS18235 replication-associated recombination protein A low > 93
Desulfovibrio vulgaris Miyazaki F 0.24 DvMF_2163 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) 0.30 DvMF_0339 recombination factor protein RarA (RefSeq) low > 51
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.57 Psyr_3177 Recombination protein MgsA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.57 Psyr_3177 Recombination protein MgsA low > 86
Bosea sp. OAE506 0.23 ABIE41_RS01595 efflux RND transporter permease subunit 0.38 ABIE41_RS14690 replication-associated recombination protein A low > 77
Rhodanobacter sp. FW510-T8 0.23 OKGIIK_11990 acrB acriflavine resistance protein B 0.49 OKGIIK_07580 rarA recombination factor protein RarA low > 53
Caulobacter crescentus NA1000 0.23 CCNA_00850 cation/multidrug efflux pump acrB2 0.39 CCNA_01342 ATPase, AAA family low > 66
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS11745 efflux RND transporter permease subunit 0.48 ABZR86_RS01825 replication-associated recombination protein A low > 74
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_00850 cation/multidrug efflux pump acrB2 0.39 CCNA_01342 ATPase, AAA family low > 67
Pseudomonas lactucae CFBP13502 0.23 GEMAOFIL_03223 multidrug efflux RND transporter permease subunit OqxB9 0.55 GEMAOFIL_03623 Replication-associated recombination protein A low > 96
Serratia liquefaciens MT49 0.23 IAI46_18690 multidrug efflux RND transporter permease AcrD 0.70 IAI46_08570 replication-associated recombination protein A 0.40 66
Rahnella sp. WP5 0.23 EX31_RS22470 multidrug efflux RND transporter permease subunit 0.71 EX31_RS18515 replication-associated recombination protein A low > 89
Rhodanobacter denitrificans MT42 0.23 LRK55_RS11630 efflux RND transporter permease subunit 0.48 LRK55_RS17545 replication-associated recombination protein A low > 63
Herbaspirillum seropedicae SmR1 0.23 HSERO_RS23055 multidrug transporter 0.47 HSERO_RS09515 ATPase AAA low > 78
Cellulophaga baltica 18 0.23 M666_RS00650 efflux RND transporter permease subunit 0.36 M666_RS01075 replication-associated recombination protein A low > 67
Rhodanobacter denitrificans FW104-10B01 0.23 LRK54_RS11905 efflux RND transporter permease subunit 0.49 LRK54_RS17320 replication-associated recombination protein A low > 59
Pantoea agglomerans CFBP13505 P0401 0.23 PagCFBP13505_RS19855 multidrug efflux RND transporter permease AcrD 0.73 PagCFBP13505_RS04430 replication-associated recombination protein A low > 74
Paraburkholderia bryophila 376MFSha3.1 0.23 H281DRAFT_04170 multidrug efflux pump 0.48 H281DRAFT_00180 Recombination protein MgsA low > 103
Pectobacterium carotovorum WPP14 0.23 HER17_RS01560 multidrug efflux RND transporter permease AcrD 0.72 HER17_RS12345 replication-associated recombination protein A low > 75
Kangiella aquimarina DSM 16071 0.23 B158DRAFT_0733 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.55 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase low > 40
Dickeya dadantii 3937 0.23 DDA3937_RS05735 multidrug efflux RND transporter permease subunit 0.73 DDA3937_RS09605 replication-associated recombination protein A low > 74
Pantoea sp. MT58 0.23 IAI47_05310 multidrug efflux RND transporter permease AcrD 0.73 IAI47_12900 replication-associated recombination protein A low > 76
Erwinia amylovora T8 0.22 OLJFJH_17855 multidrug efflux RND transporter permease subunit AcrB 0.71 OLJFJH_16170 recombination factor protein RarA low > 58
Ralstonia sp. UNC404CL21Col 0.22 ABZR87_RS09795 efflux RND transporter permease subunit 0.50 ABZR87_RS16030 replication-associated recombination protein A low > 80
Variovorax sp. OAS795 0.22 ABID97_RS17350 efflux RND transporter permease subunit 0.48 ABID97_RS07835 replication-associated recombination protein A low > 91
Dickeya dianthicola 67-19 0.22 HGI48_RS05790 multidrug efflux RND transporter permease subunit 0.73 HGI48_RS09620 replication-associated recombination protein A low > 71
Dickeya dianthicola ME23 0.22 DZA65_RS06115 multidrug efflux RND transporter permease subunit 0.73 DZA65_RS09930 replication-associated recombination protein A low > 75
Cupriavidus basilensis FW507-4G11 0.22 RR42_RS32420 multidrug efflux RND transporter permease subunit 0.49 RR42_RS04355 recombination factor protein RarA low > 128
Ralstonia solanacearum GMI1000 0.22 RS_RS00045 multidrug efflux RND transporter permease subunit 0.48 RS_RS11735 replication-associated recombination protein A low > 80
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS09445 multidrug efflux RND transporter permease subunit 0.49 RALBFv3_RS04145 replication-associated recombination protein A low > 76
Ralstonia solanacearum UW163 0.22 UW163_RS04135 multidrug efflux RND transporter permease subunit 0.49 UW163_RS09525 replication-associated recombination protein A — —
Rhodanobacter sp000427505 FW510-R12 0.22 LRK53_RS07935 multidrug efflux RND transporter permease subunit 0.49 LRK53_RS11700 replication-associated recombination protein A low > 59
Ralstonia solanacearum PSI07 0.22 RPSI07_RS23905 hydrophobe/amphiphile efflux-1 family RND transporter 0.49 RPSI07_RS13205 replication-associated recombination protein A low > 81
Erwinia tracheiphila SCR3 0.22 LU632_RS18185 efflux RND transporter permease subunit 0.69 LU632_RS09755 replication-associated recombination protein A — —
Erwinia tracheiphila HP pepo 2.2 0.21 IJEDHG_16580 adeB hydrophobe/amphiphile efflux-1 family RND transporter 0.71 IJEDHG_20230 Replication-associated recombination protein A — —
Castellaniella sp019104865 MT123 0.20 ABCV34_RS14620 multidrug efflux RND transporter permease subunit 0.47 ABCV34_RS07220 replication-associated recombination protein A low > 48

Not shown: 1 genomes with orthologs for CSW01_00850 only; 25 genomes with orthologs for CSW01_05630 only