Conservation of cofitness between CSW01_09600 and CSW01_03815 in Vibrio cholerae E7946 ATCC 55056

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09600 DNA-binding protein HU-beta 1.0 CSW01_03815 peroxidase 0.77 10
Alteromonas macleodii MIT1002 0.81 MIT1002_02756 hypothetical protein 0.81 MIT1002_01241 putative peroxiredoxin — —
Erwinia tracheiphila SCR3 0.78 LU632_RS18330 hupB DNA-binding protein HU-beta 0.77 LU632_RS18475 peroxiredoxin C low > 73
Erwinia tracheiphila HP pepo 2.2 0.76 IJEDHG_16455 hupB DNA-binding protein HU-beta 0.77 IJEDHG_16310 ahpC peroxiredoxin — —
Klebsiella michiganensis M5al 0.76 BWI76_RS06540 DNA-binding protein HU-beta 0.75 BWI76_RS06285 peroxiredoxin low > 92
Enterobacter asburiae PDN3 0.76 EX28DRAFT_2530 Bacterial nucleoid DNA-binding protein 0.76 EX28DRAFT_2568 Peroxiredoxin low > 76
Klebsiella pneumoniae MKP103 0.76 KDGMDA_14625 DNA-binding protein HU-beta 0.75 KDGMDA_14380 peroxiredoxin low > 95
Enterobacter sp. TBS_079 0.76 MPMX20_01031 DNA-binding protein HU-beta 0.76 MPMX20_00994 Alkyl hydroperoxide reductase C low > 85
Serratia liquefaciens MT49 0.75 IAI46_05025 DNA-binding protein HU-beta 0.76 IAI46_04825 peroxiredoxin C low > 87
Pantoea sp. MT58 0.75 IAI47_14640 DNA-binding protein HU-beta 0.30 IAI47_06790 alkyl hydroperoxide reductase subunit C low > 76
Escherichia coli BL21 0.75 ECD_00392 HU, DNA-binding transcriptional regulator, beta subunit 0.29 ECD_00574 alkyl hydroperoxide reductase, C22 subunit low > 61
Pantoea agglomerans CFBP13505 P0401 0.75 PagCFBP13505_RS10555 DNA-binding protein HU-beta 0.30 PagCFBP13505_RS00890 alkyl hydroperoxide reductase subunit C low > 74
Shewanella sp. ANA-3 0.75 Shewana3_2658 histone family protein DNA-binding protein (RefSeq) 0.81 Shewana3_2541 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen (RefSeq) — —
Escherichia coli BW25113 0.75 b0440 hupB HU, DNA-binding transcriptional regulator, beta subunit (NCBI) 0.29 b0605 ahpC alkyl hydroperoxide reductase, C22 subunit (NCBI) low > 76
Escherichia fergusonii Becca 0.75 EFB2_03617 DNA-binding protein HU-beta 0.29 EFB2_03486 Alkyl hydroperoxide reductase C low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_03233 DNA-binding protein HU-beta 0.29 OHPLBJKB_03100 Alkyl hydroperoxide reductase C low > 74
Rahnella sp. WP5 0.75 EX31_RS22260 DNA-binding protein HU-beta 0.77 EX31_RS22080 peroxiredoxin C low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF4356 DNA-binding protein HU-beta 0.75 GFF4302 Alkyl hydroperoxide reductase subunit C-like protein low > 78
Shewanella loihica PV-4 0.74 Shew_2505 histone family protein DNA-binding protein (RefSeq) 0.80 Shew_1516 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq) — —
Escherichia coli Nissle 1917 0.74 ECOLIN_RS02640 nucleoid-associated protein HU-beta 0.29 ECOLIN_RS03320 alkyl hydroperoxide reductase subunit C low > 55
Escherichia coli ECRC62 0.74 BNILDI_22665 hupB DNA-binding protein HU-beta 0.29 BNILDI_21895 ahpC alkyl hydroperoxide reductase subunit C low > 75
Pseudomonas aeruginosa PUPa3 0.74 DQ20_RS54825 hupB;inference=COORDINATES nucleoid-associated protein HU-beta 0.70 DQ20_RS41780 peroxiredoxin C — —
Escherichia coli ECRC101 0.74 MCAODC_27540 hupB DNA-binding protein HU-beta 0.29 MCAODC_26725 ahpC alkyl hydroperoxide reductase subunit C low > 87
Escherichia coli ECRC100 0.74 OKFHMN_08315 hupB DNA-binding protein HU-beta 0.29 OKFHMN_07510 ahpC alkyl hydroperoxide reductase subunit C low > 79
Escherichia coli ECRC99 0.74 KEDOAH_19650 hupB DNA-binding protein HU-beta 0.29 KEDOAH_20460 ahpC alkyl hydroperoxide reductase subunit C — —
Dickeya dianthicola ME23 0.74 DZA65_RS06025 DNA-binding protein HU-beta 0.76 DZA65_RS05840 peroxiredoxin C low > 75
Escherichia coli ECOR27 0.74 NOLOHH_01250 hupB DNA-binding protein HU-beta 0.29 NOLOHH_23885 ahpC alkyl hydroperoxide reductase subunit C low > 76
Escherichia coli ECRC98 0.74 JDDGAC_11970 hupB DNA-binding protein HU-beta 0.29 JDDGAC_11155 ahpC alkyl hydroperoxide reductase subunit C low > 87
Pseudomonas aeruginosa MRSN321 0.74 DY961_RS20745 hupB;inference=COORDINATES nucleoid-associated protein HU-beta 0.70 DY961_RS15370 peroxiredoxin C — —
Dickeya dadantii 3937 0.74 DDA3937_RS05655 DNA-binding protein HU-beta 0.76 DDA3937_RS05455 peroxiredoxin C — —
Pseudomonas aeruginosa PA14 0.74 IKLFDK_08765 DNA-binding protein HU-beta 0.70 IKLFDK_18015 alkyl hydroperoxide reductase — —
Escherichia coli ECOR38 0.74 HEPCGN_06930 hupB DNA-binding protein HU-beta 0.29 HEPCGN_00770 ahpC alkyl hydroperoxide reductase subunit C low > 88
Dickeya dianthicola 67-19 0.74 HGI48_RS05700 DNA-binding protein HU-beta 0.76 HGI48_RS05515 peroxiredoxin C — —
Escherichia coli ECRC102 0.74 NIAGMN_06370 hupB DNA-binding protein HU-beta 0.29 NIAGMN_05565 ahpC alkyl hydroperoxide reductase subunit C low > 80
Pseudomonas sp. S08-1 0.74 OH686_03630 DNA-binding protein HU-beta 0.29 OH686_18680 peroxiredoxin — —
Pectobacterium carotovorum WPP14 0.73 HER17_RS15835 DNA-binding protein HU-beta 0.74 HER17_RS16005 peroxiredoxin C low > 75
Erwinia amylovora T8 0.73 OLJFJH_17955 DNA-binding protein HU-beta 0.75 OLJFJH_18155 peroxiredoxin low > 58
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_1039 Bacterial nucleoid DNA-binding protein 0.80 B158DRAFT_1235 Peroxiredoxin low > 40
Pseudomonas stutzeri RCH2 0.73 Psest_2284 Bacterial nucleoid DNA-binding protein 0.29 Psest_1133 peroxiredoxin — —
Pseudomonas putida KT2440 0.72 PP_2303 DNA binding regulator, beta subunit B 0.74 PP_1084 putative peroxiredoxin — —
Shewanella amazonensis SB2B 0.72 Sama_1227 HU family DNA-binding protein (RefSeq) 0.83 Sama_2094 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen (RefSeq) — —
Marinobacter adhaerens HP15 0.72 HP15_2182 histone-like bacterial DNA-binding protein 0.29 HP15_3622 peroxiredoxin — —
Pseudomonas sp. BP01 0.71 JOY50_RS25900 HU family DNA-binding protein 0.74 JOY50_RS14915 peroxiredoxin — —
Pseudomonas fluorescens SBW25 0.69 PFLU_RS19155 HU family DNA-binding protein 0.69 PFLU_RS05705 peroxiredoxin — —
Pseudomonas simiae WCS417 0.69 PS417_17220 transcriptional regulator HU subunit alpha 0.69 PS417_05620 alkyl hydroperoxide reductase — —
Pseudomonas orientalis W4I3 0.69 QF045_RS18885 HU family DNA-binding protein 0.69 QF045_RS08545 peroxiredoxin — —
Pseudomonas sp. SVBP6 0.69 COO64_RS19210 HU family DNA-binding protein 0.70 COO64_RS16850 peroxiredoxin low > 93
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS19155 HU family DNA-binding protein 0.69 PFLU_RS05705 peroxiredoxin — —
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.34 Psyr_2975 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_1750 bacterial nucleoid protein HU beta subunit 0.34 Psyr_2975 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen — —
Acidovorax sp. GW101-3H11 0.68 Ac3H11_376 DNA-binding protein HU-beta 0.28 Ac3H11_233 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) — —
Pseudomonas sp. DMC3 0.68 GFF1446 DNA-binding protein HU-beta 0.71 GFF5096 Alkyl hydroperoxide reductase C — —
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_2215 DNA-binding protein HU-beta 0.71 Pf6N2E2_5586 Alkyl hydroperoxide reductase subunit C-like protein — —
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_20190 DNA-binding protein HU 0.69 AO353_04125 alkyl hydroperoxide reductase — —
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_3948 DNA-binding protein HU-beta 0.70 Pf1N1B4_746 Alkyl hydroperoxide reductase subunit C-like protein — —
Dechlorosoma suillum PS 0.67 Dsui_2199 bacterial nucleoid DNA-binding protein 0.69 Dsui_1253 peroxiredoxin low > 51
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_2555 DNA-binding protein HU-beta 0.70 PfGW456L13_1745 Alkyl hydroperoxide reductase subunit C-like protein — —
Paraburkholderia graminis OAS925 0.67 ABIE53_002118 DNA-binding protein HU-beta 0.33 ABIE53_005904 peroxiredoxin low > 113
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_00899 bacterial nucleoid protein Hbs 0.32 H281DRAFT_02890 peroxiredoxin (alkyl hydroperoxide reductase subunit C) — —
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_01735 DNA-binding protein HU 0.70 AO356_18305 alkyl hydroperoxide reductase — —
Castellaniella sp019104865 MT123 0.67 ABCV34_RS06640 HU family DNA-binding protein 0.31 ABCV34_RS09920 alkyl hydroperoxide reductase subunit C — —
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS07315 HU family DNA-binding protein 0.33 ABZR86_RS08490 alkyl hydroperoxide reductase subunit C — —
Variovorax sp. OAS795 0.67 ABID97_RS10665 HU family DNA-binding protein 0.29 ABID97_RS10800 alkyl hydroperoxide reductase subunit C — —
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_08025 himA integration host factor subunit alpha 0.31 OKGIIK_06555 ahpC alkyl hydroperoxide reductase subunit C — —
Variovorax sp. SCN45 0.66 GFF2853 DNA-binding protein HU-beta 0.29 GFF2826 Alkyl hydroperoxide reductase protein C (EC 1.11.1.15) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF3853 DNA-binding protein HU-beta 0.30 GFF3914 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) low > 90
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS12900 transcriptional regulator HU subunit alpha 0.33 HSERO_RS21540 alkyl hydroperoxide reductase subunit C — —
Acinetobacter baumannii LAC-4 0.64 RR41_RS12365 HU family DNA-binding protein 0.33 RR41_RS10170 peroxiredoxin — —
Acinetobacter radioresistens SK82 0.63 MPMX26_01331 DNA-binding protein HU-beta 0.31 MPMX26_02009 Alkyl hydroperoxide reductase C — —
Lysobacter sp. OAE881 0.61 ABIE51_RS14140 HU family DNA-binding protein 0.33 ABIE51_RS05485 alkyl hydroperoxide reductase subunit C — —
Ralstonia solanacearum GMI1000 0.59 RS_RS08660 HU family DNA-binding protein 0.29 RS_RS18335 peroxiredoxin — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS01335 HU family DNA-binding protein 0.28 RALBFv3_RS22270 peroxiredoxin — —
Ralstonia solanacearum UW163 0.59 UW163_RS14645 HU family DNA-binding protein 0.28 UW163_RS22815 peroxiredoxin — —
Ralstonia solanacearum PSI07 0.59 RPSI07_RS16140 HU family DNA-binding protein 0.29 RPSI07_RS00930 peroxiredoxin — —
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS12780 HU family DNA-binding protein 0.29 ABZR87_RS17235 alkyl hydroperoxide reductase subunit C low > 80
Magnetospirillum magneticum AMB-1 0.55 AMB_RS14030 HU family DNA-binding protein 0.56 AMB_RS03415 peroxiredoxin — —
Azospirillum sp. SherDot2 0.54 MPMX19_01544 DNA-binding protein HU 0.30 MPMX19_05835 Alkyl hydroperoxide reductase C — —
Sphingomonas koreensis DSMZ 15582 0.54 Ga0059261_0103 Bacterial nucleoid DNA-binding protein 0.32 Ga0059261_0155 peroxiredoxin — —
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU1795 hup-3 DNA-binding protein HU (TIGR) 0.68 DVU2247 ahpC alkyl hydroperoxide reductase C (Dmitry Rodionov) — —
Bacteroides thetaiotaomicron VPI-5482 0.53 BT2830 DNA-binding protein HU-beta (NCBI ptt file) 0.34 BT2812 alkyl hydroperoxide reductase C22 protein (NCBI ptt file) low > 81
Rhodospirillum rubrum S1H 0.53 Rru_A1553 Histone-like DNA-binding protein (NCBI) 0.57 Rru_A2897 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (NCBI) — —
Azospirillum brasilense Sp245 0.52 AZOBR_RS33080 transcriptional regulator 0.31 AZOBR_RS20510 alkyl hydroperoxide reductase subunit C — —
Desulfovibrio vulgaris Miyazaki F 0.52 DvMF_0500 histone family protein DNA-binding protein (RefSeq) 0.27 DvMF_0219 Peroxiredoxin (RefSeq) low > 51
Bacteroides ovatus ATCC 8483 0.51 BACOVA_02078 DNA-binding protein HU 0.34 BACOVA_02068 peroxiredoxin low > 96
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS01105 HU family DNA-binding protein 0.36 HMPREF1181_RS02155 peroxiredoxin low > 56
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS10500 HU family DNA-binding protein 0.34 HMPREF1058_RS09540 peroxiredoxin low > 67
Methylophilus sp. DMC18 0.48 GFF1306 DNA-binding protein HU-beta 0.28 GFF2285 Alkyl hydroperoxide reductase C low > 43
Mucilaginibacter yixingensis YX-36 DSM 26809 0.35 ABZR88_RS20435 HU family DNA-binding protein 0.31 ABZR88_RS20965 peroxiredoxin — —
Pedobacter sp. GW460-11-11-14-LB5 0.33 CA265_RS22675 integration host factor subunit beta 0.39 CA265_RS21370 peroxiredoxin — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_14990 integration host factor subunit beta 0.55 CA264_00400 alkyl hydroperoxide reductase — —

Not shown: 8 genomes with orthologs for CSW01_09600 only; 20 genomes with orthologs for CSW01_03815 only