Conservation of cofitness between CSW01_01810 and CSW01_03695 in Vibrio cholerae E7946 ATCC 55056

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG 1.0 CSW01_03695 ribosomal large subunit pseudouridine synthase D 0.77 4
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS11155 tRNA epoxyqueuosine(34) reductase QueG 0.70 PagCFBP13505_RS16540 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Pantoea sp. MT58 0.70 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG 0.70 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Dickeya dadantii 3937 0.69 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG 0.70 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Pectobacterium carotovorum WPP14 0.68 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG 0.71 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Dickeya dianthicola 67-19 0.68 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG 0.70 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 71
Dickeya dianthicola ME23 0.68 DZA65_RS19710 tRNA epoxyqueuosine(34) reductase QueG 0.70 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF819 Epoxyqueuosine (oQ) reductase QueG 0.70 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.66 28
Escherichia coli ECOR27 0.67 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG 0.71 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Escherichia coli BL21 0.67 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis 0.70 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 61
Escherichia coli BW25113 0.67 b4166 yjeS predicted Fe-S electron transport protein (NCBI) 0.70 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Escherichia coli ECRC62 0.67 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG 0.71 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_03876 Epoxyqueuosine reductase 0.70 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D low > 74
Escherichia coli ECRC100 0.67 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG 0.70 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 79
Escherichia coli ECRC98 0.67 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG 0.70 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli ECOR38 0.67 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG 0.70 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 88
Escherichia coli ECRC99 0.67 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG 0.70 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC102 0.67 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG 0.70 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 80
Serratia liquefaciens MT49 0.67 IAI46_01595 tRNA epoxyqueuosine(34) reductase QueG 0.70 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli Nissle 1917 0.67 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG 0.70 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.67 14
Escherichia fergusonii Becca 0.67 EFB2_04369 Epoxyqueuosine reductase 0.70 EFB2_01296 Ribosomal large subunit pseudouridine synthase D 0.48 10
Escherichia coli ECRC101 0.67 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG 0.70 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Klebsiella pneumoniae MKP103 0.66 KDGMDA_11005 tRNA epoxyqueuosine(34) reductase QueG 0.70 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.53 31
Rahnella sp. WP5 0.66 EX31_RS08850 tRNA epoxyqueuosine(34) reductase QueG 0.69 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 89
Klebsiella michiganensis M5al 0.66 BWI76_RS02505 tRNA epoxyqueuosine(34) reductase QueG 0.69 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3363 epoxyqueuosine reductase 0.70 EX28DRAFT_2695 pseudouridine synthase, RluA family low > 76
Enterobacter sp. TBS_079 0.65 MPMX20_00447 Epoxyqueuosine reductase 0.70 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D low > 85
Shewanella sp. ANA-3 0.64 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) 0.60 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) low > 73
Shewanella loihica PV-4 0.64 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) 0.60 Shew_2950 RluA family pseudouridine synthase (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.63 MIT1002_03794 Epoxyqueuosine reductase 0.59 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D low > 70
Shewanella amazonensis SB2B 0.61 Sama_2625 iron-sulfur cluster-binding protein (RefSeq) 0.59 Sama_2605 pseudouridylate synthase (RefSeq) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_0566 4Fe-4S cluster binding protein 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas aeruginosa PUPa3 0.56 DQ20_RS51515 queG;go_function=4 tRNA epoxyqueuosine(34) reductase QueG 0.51 DQ20_RS56195 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 101
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_0566 4Fe-4S cluster binding protein 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas aeruginosa PA14 0.55 IKLFDK_28790 tRNA epoxyqueuosine(34) reductase QueG 0.51 IKLFDK_00810 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.33 48
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS10540 queG;go_function=4 tRNA epoxyqueuosine(34) reductase QueG 0.51 DY961_RS23730 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 100
Pseudomonas sp. S08-1 0.55 OH686_09500 epoxyqueuosine reductase 0.53 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase low > 80
Pseudomonas sp. DMC3 0.55 GFF3214 Epoxyqueuosine reductase 0.54 GFF4004 Ribosomal large subunit pseudouridine synthase D low > 89
Pseudomonas segetis P6 0.55 MPMX49_04159 Epoxyqueuosine reductase 0.53 MPMX49_03922 Ribosomal large subunit pseudouridine synthase D low > 75
Pseudomonas fluorescens SBW25 0.55 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas simiae WCS417 0.54 PS417_02460 epoxyqueuosine reductase 0.54 PS417_03820 ribosomal large subunit pseudouridine synthase D — —
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG 0.54 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas sp. BP01 0.54 JOY50_RS17200 queG tRNA epoxyqueuosine(34) reductase QueG 0.54 JOY50_RS27130 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 84
Pseudomonas orientalis W4I3 0.54 QF045_RS05520 tRNA epoxyqueuosine(34) reductase QueG 0.54 QF045_RS06805 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Pseudomonas sp. RS175 0.54 PFR28_05115 Epoxyqueuosine reductase 0.54 PFR28_03748 Ribosomal large subunit pseudouridine synthase D low > 88
Pseudomonas lactucae CFBP13502 0.54 GEMAOFIL_00730 Epoxyqueuosine reductase 0.54 GEMAOFIL_00969 Ribosomal large subunit pseudouridine synthase D low > 96
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_08685 epoxyqueuosine reductase 0.55 AO356_15925 ribosomal large subunit pseudouridine synthase D low > 104
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG 0.54 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_13115 epoxyqueuosine reductase 0.54 AO353_14220 ribosomal large subunit pseudouridine synthase D low > 101
Pseudomonas sp. SVBP6 0.54 COO64_RS17870 queG tRNA epoxyqueuosine(34) reductase QueG 0.54 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Pseudomonas putida KT2440 0.54 PP_4900 epoxyqueuosine reductase 0.53 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG 0.54 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Rhodanobacter sp000427505 FW510-R12 0.54 LRK53_RS13485 tRNA epoxyqueuosine(34) reductase QueG 0.47 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 59
Dyella japonica UNC79MFTsu3.2 0.54 ABZR86_RS00835 tRNA epoxyqueuosine(34) reductase QueG 0.48 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS15130 tRNA epoxyqueuosine(34) reductase QueG 0.48 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 59
Rhodanobacter denitrificans MT42 0.53 LRK55_RS14845 tRNA epoxyqueuosine(34) reductase QueG 0.48 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 63
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_03900 queG tRNA epoxyqueuosine(34) reductase QueG 0.46 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 53
Methylophilus sp. DMC18 0.52 GFF1249 Epoxyqueuosine reductase 0.45 GFF1213 Ribosomal large subunit pseudouridine synthase D low > 43
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS04220 epoxyqueuosine reductase 0.35 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D low > 78
Lysobacter sp. OAE881 0.51 ABIE51_RS08045 tRNA epoxyqueuosine(34) reductase QueG 0.49 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 62
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS00775 tRNA epoxyqueuosine(34) reductase QueG 0.38 ABZR87_RS13315 RluA family pseudouridine synthase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.2252.1 Epoxyqueuosine (oQ) reductase QueG 0.51 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 74
Marinobacter adhaerens HP15 0.50 HP15_2505 iron-sulfur cluster binding protein 0.51 HP15_527 pseudouridine synthase, RluA family low > 73
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS05120 tRNA epoxyqueuosine(34) reductase QueG 0.38 RALBFv3_RS01520 RluA family pseudouridine synthase low > 76
Ralstonia solanacearum UW163 0.49 UW163_RS08505 tRNA epoxyqueuosine(34) reductase QueG 0.38 UW163_RS14830 RluA family pseudouridine synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF5474 Epoxyqueuosine (oQ) reductase QueG 0.35 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 90
Acidovorax sp. GW101-3H11 0.49 Ac3H11_306 Epoxyqueuosine (oQ) reductase QueG 0.32 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 79
Ralstonia solanacearum GMI1000 0.49 RS_RS12740 tRNA epoxyqueuosine(34) reductase QueG 0.39 RS_RS08205 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum PSI07 0.49 RPSI07_RS12175 tRNA epoxyqueuosine(34) reductase QueG 0.39 RPSI07_RS15970 RluA family pseudouridine synthase low > 81
Variovorax sp. OAS795 0.49 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG 0.28 ABID97_RS14190 RluA family pseudouridine synthase low > 91
Castellaniella sp019104865 MT123 0.48 ABCV34_RS13905 tRNA epoxyqueuosine(34) reductase QueG 0.33 ABCV34_RS01885 RluA family pseudouridine synthase low > 48
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_0486 iron-sulfur cluster binding protein, putative 0.53 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific low > 40
Acinetobacter radioresistens SK82 0.47 MPMX26_01783 Epoxyqueuosine reductase 0.43 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D low > 36
Variovorax sp. SCN45 0.47 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG 0.30 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) low > 127
Acinetobacter baumannii LAC-4 0.46 RR41_RS11805 tRNA epoxyqueuosine(34) reductase QueG 0.49 RR41_RS15070 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Rhodospirillum rubrum S1H 0.33 Rru_A0279 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) 0.35 Rru_A1111 Pseudouridine synthase, RluD (NCBI) low > 58
Pedobacter sp. GW460-11-11-14-LB5 0.33 CA265_RS07695 tRNA epoxyqueuosine(34) reductase QueG 0.28 CA265_RS14415 pseudouridine synthase low > 88
Caulobacter crescentus NA1000 0.33 CCNA_03753 iron-sulfur cluster-binding protein 0.31 CCNA_00485 ribosomal large subunit pseudouridine synthase D 0.48 11
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_03753 iron-sulfur cluster-binding protein 0.31 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 67
Magnetospirillum magneticum AMB-1 0.32 AMB_RS03995 tRNA epoxyqueuosine(34) reductase QueG 0.30 AMB_RS16095 RluA family pseudouridine synthase low > 64
Xanthobacter sp. DMC5 0.32 GFF3718 Epoxyqueuosine reductase 0.36 GFF2508 Ribosomal large subunit pseudouridine synthase D — —
Rhizobium sp. OAE497 0.32 ABIE40_RS01310 tRNA epoxyqueuosine(34) reductase QueG 0.36 ABIE40_RS14790 RluA family pseudouridine synthase low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS11375 tRNA epoxyqueuosine(34) reductase QueG 0.29 A4249_RS10060 RluA family pseudouridine synthase low > 48
Dinoroseobacter shibae DFL-12 0.32 Dshi_3307 domain of unknown function DUF1730 (RefSeq) 0.28 Dshi_2610 pseudouridine synthase, RluA family (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.31 SMc00406 4Fe-4S ferredoxin 0.33 SMc00647 ribosomal large subunit pseudouridine synthase low > 103
Cellulophaga baltica 18 0.31 M666_RS07680 tRNA epoxyqueuosine(34) reductase QueG 0.29 M666_RS09010 RluA family pseudouridine synthase low > 67
Sphingobium sp. HT1-2 0.31 GFF3286 Epoxyqueuosine reductase (EC 1.17.99.6) QueG 0.37 GFF4062 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) low > 95
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_0824 iron-sulfur cluster binding protein, putative 0.31 Echvi_0642 pseudouridine synthase, RluA family low > 79
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_1058 epoxyqueuosine reductase 0.32 Ga0059261_0664 pseudouridine synthase, RluA family low > 68
Phaeobacter inhibens DSM 17395 0.31 PGA1_c34310 Uncharacterized Fe-S protein 0.32 PGA1_c09000 ribosomal large subunit pseudouridine synthase D low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.30 ABZR88_RS07975 tRNA epoxyqueuosine(34) reductase QueG 0.29 ABZR88_RS03985 RluA family pseudouridine synthase low > 71
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_0530 4Fe-4S cluster binding 0.29 Synpcc7942_1112 ribosomal large subunit pseudouridine synthase D low > 38
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_19810 epoxyqueuosine reductase 0.28 CA264_15205 RNA pseudouridine synthase low > 74
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS06835 tRNA epoxyqueuosine(34) reductase QueG 0.28 HMPREF1078_RS12640 RluA family pseudouridine synthase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.25 BT3245 putative iron-sulfur cluster-binding protein (NCBI ptt file) 0.31 BT3712 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) low > 81

Not shown: 8 genomes with orthologs for CSW01_01810 only; 17 genomes with orthologs for CSW01_03695 only