Conservation of cofitness between CSW01_06080 and CSW01_03090 in Vibrio cholerae E7946 ATCC 55056

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06080 histidine ammonia-lyase 1.0 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 0.48 12
Shewanella sp. ANA-3 0.74 Shewana3_0101 histidine ammonia-lyase (RefSeq) 0.62 Shewana3_3879 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.74 SO0098 hutH histidine ammonia-lyase (NCBI ptt file) 0.63 SO0301 hypothetical methyltransferase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.73 Shew_3756 histidine ammonia-lyase (RefSeq) 0.63 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) low > 60
Serratia liquefaciens MT49 0.72 IAI46_03660 histidine ammonia-lyase 0.59 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86
Acinetobacter baumannii LAC-4 0.71 RR41_RS00385 histidine ammonia-lyase 0.44 RR41_RS09275 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 55
Pseudomonas simiae WCS417 0.71 PS417_01750 histidine ammonia-lyase 0.53 PS417_04590 methyltransferase low > 88
Enterobacter asburiae PDN3 0.71 EX28DRAFT_2219 histidine ammonia-lyase (EC 4.3.1.3) 0.61 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Pseudomonas fluorescens SBW25 0.70 PFLU_RS01805 histidine ammonia-lyase 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 33
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS01805 histidine ammonia-lyase 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Enterobacter sp. TBS_079 0.70 MPMX20_01400 Histidine ammonia-lyase 0.61 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I low > 85
Pseudomonas sp. S08-1 0.70 OH686_16755 histidine ammonia-lyase 0.51 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Alteromonas macleodii MIT1002 0.70 MIT1002_00905 Histidine ammonia-lyase 0.49 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I low > 70
Pseudomonas lactucae CFBP13502 0.70 GEMAOFIL_00574 Histidine ammonia-lyase 0.53 GEMAOFIL_01121 Ribosomal RNA small subunit methyltransferase I low > 93
Pseudomonas putida KT2440 0.70 PP_5032 Histidine ammonia-lyase 0.52 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase low > 96
Pseudomonas segetis P6 0.70 MPMX49_03960 Histidine ammonia-lyase 0.56 MPMX49_03819 Ribosomal RNA small subunit methyltransferase I low > 75
Pseudomonas sp. BP01 0.70 JOY50_RS09525 hutH histidine ammonia-lyase 0.52 JOY50_RS15165 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 84
Cupriavidus basilensis FW507-4G11 0.70 RR42_RS14640 histidine ammonia-lyase 0.37 RR42_RS19740 16S rRNA methyltransferase low > 128
Pseudomonas sp. DMC3 0.70 GFF4056 Histidine ammonia-lyase 0.54 GFF4428 Ribosomal RNA small subunit methyltransferase I low > 89
Klebsiella pneumoniae MKP103 0.69 KDGMDA_17005 histidine ammonia-lyase 0.58 KDGMDA_05780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 95
Pseudomonas syringae pv. syringae B728a ΔmexB 0.69 Psyr_4833 histidine ammonia-lyase 0.53 Psyr_4112 Protein of unknown function UPF0011 low > 86
Pseudomonas syringae pv. syringae B728a 0.69 Psyr_4833 histidine ammonia-lyase 0.53 Psyr_4112 Protein of unknown function UPF0011 low > 86
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_320 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.51 PfGW456L13_1643 rRNA small subunit methyltransferase I low > 87
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_1581 Histidine ammonia-lyase (EC 4.3.1.3) 0.52 Pf1N1B4_953 rRNA small subunit methyltransferase I — —
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_09600 histidine ammonia-lyase 0.53 AO356_17110 methyltransferase 0.44 31
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_3799 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.53 Pf6N2E2_5346 rRNA small subunit methyltransferase I low > 103
Klebsiella michiganensis M5al 0.69 BWI76_RS08740 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.60 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase low > 92
Pseudomonas sp. RS175 0.69 PFR28_04971 Histidine ammonia-lyase 0.53 PFR28_03597 Ribosomal RNA small subunit methyltransferase I low > 88
Pseudomonas aeruginosa PA14 0.69 IKLFDK_28030 histidine ammonia-lyase 0.50 IKLFDK_01980 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_12270 histidine ammonia-lyase 0.53 AO353_15290 methyltransferase low > 101
Pseudomonas sp. SVBP6 0.68 COO64_RS13415 hutH histidine ammonia-lyase 0.54 COO64_RS11845 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 93
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF668 Histidine ammonia-lyase (EC 4.3.1.3) 0.61 GFF1521 rRNA small subunit methyltransferase I low > 78
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_1432 histidine ammonia-lyase (EC 4.3.1.3) 0.45 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 40
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS23515 histidine ammonia-lyase 0.42 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_04873 histidine ammonia-lyase 0.39 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.35 35
Paraburkholderia graminis OAS925 0.58 ABIE53_001729 histidine ammonia-lyase 0.38 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase low > 113
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS07555 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.40 BPHYT_RS01940 16S rRNA methyltransferase low > 109
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS01025 histidine ammonia-lyase 0.33 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Rahnella sp. WP5 0.56 EX31_RS06755 histidine ammonia-lyase 0.61 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 89
Rhodanobacter sp000427505 FW510-R12 0.56 LRK53_RS08105 histidine ammonia-lyase 0.45 LRK53_RS16300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 59
Ralstonia solanacearum GMI1000 0.55 RS_RS13250 histidine ammonia-lyase 0.33 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Ralstonia solanacearum UW163 0.55 UW163_RS08235 histidine ammonia-lyase 0.34 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS05390 histidine ammonia-lyase 0.34 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11915 histidine ammonia-lyase 0.33 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 81
Erwinia amylovora T8 0.55 OLJFJH_16540 histidine ammonia-lyase 0.65 OLJFJH_02280 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 58
Rhodospirillum rubrum S1H 0.55 Rru_A1301 Histidine ammonia-lyase (NCBI) 0.32 Rru_A3693 Protein of unknown function UPF0011 (NCBI) low > 58
Hydrogenophaga sp. GW460-11-11-14-LB1 0.55 GFF3589 Histidine ammonia-lyase (EC 4.3.1.3) 0.32 GFF2715 rRNA small subunit methyltransferase I — —
Dickeya dadantii 3937 0.54 DDA3937_RS14995 histidine ammonia-lyase 0.64 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Variovorax sp. OAS795 0.54 ABID97_RS03420 histidine ammonia-lyase 0.33 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 91
Dickeya dianthicola ME23 0.54 DZA65_RS15835 histidine ammonia-lyase 0.63 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Dickeya dianthicola 67-19 0.54 HGI48_RS15090 histidine ammonia-lyase 0.64 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.54 5
Pantoea sp. MT58 0.53 IAI47_13275 histidine ammonia-lyase 0.61 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Brevundimonas sp. GW460-12-10-14-LB2 0.53 A4249_RS06630 histidine ammonia-lyase 0.28 A4249_RS13300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Azospirillum sp. SherDot2 0.53 MPMX19_04940 Histidine ammonia-lyase 0.35 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I low > 112
Variovorax sp. SCN45 0.53 GFF6409 Histidine ammonia-lyase (EC 4.3.1.3) 0.33 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) low > 127
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS04045 histidine ammonia-lyase 0.63 PagCFBP13505_RS11450 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Acidovorax sp. GW101-3H11 0.53 Ac3H11_2558 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.34 Ac3H11_4466 rRNA small subunit methyltransferase I — —
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_01010 histidine ammonia-lyase 0.32 CCNA_00143 ribosomal RNA small subunit methyltransferase I low > 67
Caulobacter crescentus NA1000 0.51 CCNA_01010 histidine ammonia-lyase 0.32 CCNA_00143 ribosomal RNA small subunit methyltransferase I low > 66
Castellaniella sp019104865 MT123 0.51 ABCV34_RS12780 histidine ammonia-lyase 0.38 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 48
Rhizobium sp. OAE497 0.50 ABIE40_RS20355 histidine ammonia-lyase 0.38 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 107
Sphingobium sp. HT1-2 0.50 GFF1212 Histidine ammonia-lyase (EC 4.3.1.3) 0.36 GFF309 '16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)' transl_table=11 low > 95
Sphingomonas koreensis DSMZ 15582 0.49 Ga0059261_3963 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.34 Ga0059261_2755 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 68
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.3296.1 Histidine ammonia-lyase (EC 4.3.1.3) 0.47 Xcc-8004.4371.1 rRNA small subunit methyltransferase I low > 74
Sinorhizobium meliloti 1021 0.49 SM_b21165 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.39 SMc00416 hypothetical protein low > 103
Agrobacterium fabrum C58 0.47 Atu3933 histidine ammonia-lyase 0.37 Atu0302 tetrapyrrole methylase family protein low > 89
Phaeobacter inhibens DSM 17395 0.46 PGA1_c36340 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.28 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 62
Bosea sp. OAE506 0.45 ABIE41_RS23645 histidine ammonia-lyase 0.35 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 77
Shewanella amazonensis SB2B 0.38 Sama_1631 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.62 Sama_3353 hypothetical protein (RefSeq) low > 62
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS11575 histidine ammonia-lyase 0.33 HMPREF1078_RS04125 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 61
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS01300 aromatic amino acid ammonia-lyase 0.45 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 59
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_05610 hutH histidine ammonia-lyase 0.44 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 52
Rhodanobacter denitrificans MT42 0.30 LRK55_RS01065 aromatic amino acid lyase 0.45 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 63
Lysobacter sp. OAE881 0.29 ABIE51_RS13345 aromatic amino acid lyase 0.44 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 62
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS22680 histidine ammonia-lyase 0.45 HSERO_RS23345 16S rRNA methyltransferase low > 78
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS06750 histidine ammonia-lyase 0.49 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Pseudomonas stutzeri RCH2 0.22 Psest_3695 Histidine ammonia-lyase 0.52 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 67
Escherichia coli ECOR38 0.21 HEPCGN_01360 histidine ammonia-lyase 0.64 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 88

Not shown: 11 genomes with orthologs for CSW01_06080 only; 25 genomes with orthologs for CSW01_03090 only