Conservation of cofitness between CSW01_03110 and CSW01_01810 in Vibrio cholerae E7946 ATCC 55056

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03110 carbonate dehydratase 1.0 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG 0.54 10
Dickeya dianthicola ME23 0.64 DZA65_RS17180 carbonate dehydratase 0.68 DZA65_RS19710 tRNA epoxyqueuosine(34) reductase QueG — —
Dickeya dadantii 3937 0.64 DDA3937_RS15980 carbonate dehydratase 0.69 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG — —
Dickeya dianthicola 67-19 0.64 HGI48_RS16095 carbonate dehydratase 0.68 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG — —
Serratia liquefaciens MT49 0.63 IAI46_21270 carbonate dehydratase 0.67 IAI46_01595 tRNA epoxyqueuosine(34) reductase QueG low > 87
Escherichia coli ECRC100 0.63 OKFHMN_10440 can carbonate dehydratase 0.67 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC101 0.63 MCAODC_00955 can carbonate dehydratase 0.67 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC102 0.63 NIAGMN_08290 can carbonate dehydratase 0.67 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC98 0.63 JDDGAC_14035 can carbonate dehydratase 0.67 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC99 0.63 KEDOAH_17715 can carbonate dehydratase 0.67 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG — —
Rahnella sp. WP5 0.63 EX31_RS03305 carbonate dehydratase 0.66 EX31_RS08850 tRNA epoxyqueuosine(34) reductase QueG low > 89
Escherichia coli BW25113 0.63 b0126 can carbonic anhydrase (NCBI) 0.67 b4166 yjeS predicted Fe-S electron transport protein (NCBI) — —
Escherichia coli BL21 0.63 ECD_00125 carbonic anhydrase 0.67 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis — —
Pectobacterium carotovorum WPP14 0.63 HER17_RS05535 carbonate dehydratase 0.68 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC62 0.63 BNILDI_08885 can carbonate dehydratase 0.67 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_03535 Carbonic anhydrase 2 0.67 OHPLBJKB_03876 Epoxyqueuosine reductase — —
Escherichia coli ECOR27 0.63 NOLOHH_02785 can carbonate dehydratase 0.67 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG — —
Klebsiella pneumoniae MKP103 0.63 KDGMDA_13215 carbonate dehydratase 0.66 KDGMDA_11005 tRNA epoxyqueuosine(34) reductase QueG low > 95
Escherichia coli ECOR38 0.63 HEPCGN_08420 can carbonate dehydratase 0.67 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli Nissle 1917 0.63 ECOLIN_RS00700 carbonate dehydratase 0.67 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF102 Carbonic anhydrase (EC 4.2.1.1) 0.67 GFF819 Epoxyqueuosine (oQ) reductase QueG — —
Escherichia fergusonii Becca 0.63 EFB2_03919 Carbonic anhydrase 2 0.67 EFB2_04369 Epoxyqueuosine reductase — —
Enterobacter asburiae PDN3 0.62 EX28DRAFT_3723 Carbonic anhydrase 0.66 EX28DRAFT_3363 epoxyqueuosine reductase low > 76
Enterobacter sp. TBS_079 0.62 MPMX20_00820 Carbonic anhydrase 2 0.65 MPMX20_00447 Epoxyqueuosine reductase low > 85
Klebsiella michiganensis M5al 0.62 BWI76_RS04960 carbonate dehydratase 0.66 BWI76_RS02505 tRNA epoxyqueuosine(34) reductase QueG low > 92
Pantoea sp. MT58 0.61 IAI47_15685 carbonate dehydratase 0.70 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG low > 76
Pantoea agglomerans CFBP13505 P0401 0.61 PagCFBP13505_RS13315 carbonate dehydratase 0.70 PagCFBP13505_RS11155 tRNA epoxyqueuosine(34) reductase QueG low > 74
Pseudomonas aeruginosa PA14 0.55 IKLFDK_00105 carbonate dehydratase 0.55 IKLFDK_28790 tRNA epoxyqueuosine(34) reductase QueG low > 98
Pseudomonas aeruginosa PUPa3 0.55 DQ20_RS57695 can;go_function=carbonate carbonate dehydratase 0.56 DQ20_RS51515 queG;go_function=4 tRNA epoxyqueuosine(34) reductase QueG 0.17 78
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS29230 can;go_function=carbonate carbonate dehydratase 0.55 DY961_RS10540 queG;go_function=4 tRNA epoxyqueuosine(34) reductase QueG low > 100
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_14595 carbonate dehydratase 0.54 AO353_13115 epoxyqueuosine reductase low > 101
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_5190 Carbonic anhydrase (EC 4.2.1.1) 0.54 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG low > 103
Pseudomonas sp. RS175 0.55 PFR28_03679 Carbonic anhydrase 2 0.54 PFR28_05115 Epoxyqueuosine reductase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_0859 Carbonate dehydratase 0.56 Psyr_0566 4Fe-4S cluster binding protein low > 86
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_0859 Carbonate dehydratase 0.56 Psyr_0566 4Fe-4S cluster binding protein low > 86
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_16270 carbonate dehydratase 0.54 AO356_08685 epoxyqueuosine reductase low > 104
Pseudomonas simiae WCS417 0.54 PS417_03310 carbonate dehydratase 0.54 PS417_02460 epoxyqueuosine reductase low > 88
Pseudomonas sp. SVBP6 0.54 COO64_RS03130 can carbonate dehydratase 0.54 COO64_RS17870 queG tRNA epoxyqueuosine(34) reductase QueG low > 93
Pseudomonas fluorescens SBW25 0.54 PFLU_RS03405 carbonate dehydratase 0.55 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG low > 109
Pseudomonas lactucae CFBP13502 0.54 GEMAOFIL_00880 Carbonic anhydrase 2 0.54 GEMAOFIL_00730 Epoxyqueuosine reductase low > 96
Pseudomonas sp. S08-1 0.54 OH686_08030 Carbonic anhydrase, beta class 0.55 OH686_09500 epoxyqueuosine reductase low > 80
Pseudomonas fluorescens SBW25-INTG 0.54 PFLU_RS03405 carbonate dehydratase 0.55 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG low > 109
Pseudomonas orientalis W4I3 0.54 QF045_RS06365 carbonate dehydratase 0.54 QF045_RS05520 tRNA epoxyqueuosine(34) reductase QueG low > 93
Pseudomonas stutzeri RCH2 0.54 Psest_1062 Carbonic anhydrase 0.57 Psest_0677 iron-sulfur cluster binding protein, putative low > 67
Pseudomonas segetis P6 0.53 ACVTMO_RS06450 can carbonate dehydratase 0.55 ACVTMO_RS20630 queG tRNA epoxyqueuosine(34) reductase QueG low > 75
Shewanella oneidensis MR-1 0.53 SO2474 carbonic anhydrase family protein (NCBI ptt file) 0.63 SO3861 iron-sulfur cluster-binding protein (NCBI ptt file) low > 76
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_1553 Carbonic anhydrase (EC 4.2.1.1) 0.54 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG 0.51 61
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_2893 Carbonic anhydrase (EC 4.2.1.1) 0.54 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG low > 87
Shewanella loihica PV-4 0.53 Shew_1859 carbonate dehydratase (RefSeq) 0.64 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.52 Shewana3_1909 carbonic anhydrase (RefSeq) 0.64 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) low > 73
Dechlorosoma suillum PS 0.52 Dsui_0798 carbonic anhydrase 0.47 Dsui_3502 iron-sulfur cluster binding protein, putative low > 51
Ralstonia solanacearum PSI07 0.52 RPSI07_RS22795 carbonate dehydratase 0.49 RPSI07_RS12175 tRNA epoxyqueuosine(34) reductase QueG — —
Pseudomonas sp. DMC3 0.52 GFF4513 Carbonic anhydrase 2 0.55 GFF3214 Epoxyqueuosine reductase low > 89
Ralstonia solanacearum UW163 0.52 UW163_RS03060 carbonate dehydratase 0.49 UW163_RS08505 tRNA epoxyqueuosine(34) reductase QueG — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS10520 carbonate dehydratase 0.49 RALBFv3_RS05120 tRNA epoxyqueuosine(34) reductase QueG low > 76
Shewanella amazonensis SB2B 0.52 Sama_1642 carbonate dehydratase (RefSeq) 0.61 Sama_2625 iron-sulfur cluster-binding protein (RefSeq) low > 62
Ralstonia solanacearum GMI1000 0.52 RS_RS01360 carbonate dehydratase 0.49 RS_RS12740 tRNA epoxyqueuosine(34) reductase QueG low > 80
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS06310 carbonate dehydratase 0.50 ABZR87_RS00775 tRNA epoxyqueuosine(34) reductase QueG low > 80
Pseudomonas sp. BP01 0.51 JOY50_RS05150 can carbonate dehydratase 0.54 JOY50_RS17200 queG tRNA epoxyqueuosine(34) reductase QueG — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF1724 Carbonic anhydrase (EC 4.2.1.1) 0.49 GFF5474 Epoxyqueuosine (oQ) reductase QueG — —
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_02088 carbonic anhydrase 0.50 H281DRAFT_04128 epoxyqueuosine reductase low > 103
Paraburkholderia graminis OAS925 0.50 ABIE53_000591 carbonic anhydrase 0.50 ABIE53_003363 epoxyqueuosine reductase low > 113
Rhodanobacter sp000427505 FW510-R12 0.50 LRK53_RS07365 carbonate dehydratase 0.54 LRK53_RS13485 tRNA epoxyqueuosine(34) reductase QueG — —
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_09635 can carbonate dehydratase 0.52 OKGIIK_03900 queG tRNA epoxyqueuosine(34) reductase QueG — —
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0144 Carbonic anhydrase 0.48 B158DRAFT_0486 iron-sulfur cluster binding protein, putative low > 40
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS00880 carbonate dehydratase 0.48 RR42_RS03405 epoxyqueuosine reductase — —
Magnetospirillum magneticum AMB-1 0.49 AMB_RS21440 carbonate dehydratase 0.32 AMB_RS03995 tRNA epoxyqueuosine(34) reductase QueG — —
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS02235 beta carbonic anhydrase 0.50 BPHYT_RS15960 iron-sulfur cluster binding protein low > 109
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.3324.1 Carbonic anhydrase (EC 4.2.1.1) 0.50 Xcc-8004.2252.1 Epoxyqueuosine (oQ) reductase QueG low > 74
Lysobacter sp. OAE881 0.48 ABIE51_RS12660 carbonate dehydratase 0.51 ABIE51_RS08045 tRNA epoxyqueuosine(34) reductase QueG — —
Variovorax sp. SCN45 0.48 GFF1991 Carbonic anhydrase, beta class (EC 4.2.1.1) 0.47 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG — —
Rhodanobacter denitrificans MT42 0.48 LRK55_RS02335 carbonate dehydratase 0.53 LRK55_RS14845 tRNA epoxyqueuosine(34) reductase QueG — —
Variovorax sp. OAS795 0.48 ABID97_RS25185 carbonate dehydratase 0.49 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG — —
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS02580 carbonate dehydratase 0.53 LRK54_RS15130 tRNA epoxyqueuosine(34) reductase QueG — —
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS08905 carbonate dehydratase 0.54 ABZR86_RS00835 tRNA epoxyqueuosine(34) reductase QueG low > 74
Marinobacter adhaerens HP15 0.47 HP15_2268 carbonate dehydratase 0.50 HP15_2505 iron-sulfur cluster binding protein low > 73
Mucilaginibacter yixingensis YX-36 DSM 26809 0.47 ABZR88_RS14650 carbonate dehydratase 0.30 ABZR88_RS07975 tRNA epoxyqueuosine(34) reductase QueG low > 71
Caulobacter crescentus NA1000 0.46 CCNA_03684 carbonic anhydrase 0.33 CCNA_03753 iron-sulfur cluster-binding protein low > 66
Caulobacter crescentus NA1000 Δfur 0.46 CCNA_03684 carbonic anhydrase 0.33 CCNA_03753 iron-sulfur cluster-binding protein low > 67
Acidovorax sp. GW101-3H11 0.46 Ac3H11_2992 Carbonic anhydrase (EC 4.2.1.1) 0.49 Ac3H11_306 Epoxyqueuosine (oQ) reductase QueG low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.46 CA264_02630 carbonic anhydrase 0.29 CA264_19810 epoxyqueuosine reductase low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.45 CA265_RS16620 carbonate dehydratase 0.33 CA265_RS07695 tRNA epoxyqueuosine(34) reductase QueG low > 88
Rhodospirillum rubrum S1H 0.44 Rru_A2056 Carbonate dehydratase (NCBI) 0.33 Rru_A0279 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) — —
Cellulophaga baltica 18 0.41 M666_RS04000 carbonic anhydrase 0.31 M666_RS07680 tRNA epoxyqueuosine(34) reductase QueG low > 67
Alteromonas macleodii MIT1002 0.20 MIT1002_01121 Carbonic anhydrase 1 0.63 MIT1002_03794 Epoxyqueuosine reductase low > 70
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS16790 carbonic anhydrase 0.52 HSERO_RS04220 epoxyqueuosine reductase low > 78
Dinoroseobacter shibae DFL-12 0.18 Dshi_3236 Carbonate dehydratase (RefSeq) 0.32 Dshi_3307 domain of unknown function DUF1730 (RefSeq) low > 64
Acinetobacter radioresistens SK82 0.15 MPMX26_02341 Carbonic anhydrase 0.47 MPMX26_01783 Epoxyqueuosine reductase — —
Methylophilus sp. DMC18 0.13 GFF426 Carbonic anhydrase 0.52 GFF1249 Epoxyqueuosine reductase low > 43

Not shown: 5 genomes with orthologs for CSW01_03110 only; 15 genomes with orthologs for CSW01_01810 only