Conservation of cofitness between CSW01_09245 and CSW01_00650 in Vibrio cholerae E7946 ATCC 55056

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09245 Holliday junction branch migration protein RuvA 1.0 CSW01_00650 tyrosine recombinase XerC 0.79 8
Escherichia coli Nissle 1917 0.67 ECOLIN_RS10365 Holliday junction branch migration protein RuvA 0.54 ECOLIN_RS21875 tyrosine recombinase XerC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC — —
Escherichia coli BW25113 0.67 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.46 12
Escherichia fergusonii Becca 0.67 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA 0.54 EFB2_04826 Tyrosine recombinase XerC — —
Escherichia coli BL21 0.67 ECD_01832 component of RuvABC resolvasome, regulatory subunit 0.55 ECD_03687 site-specific tyrosine recombinase — —
Escherichia coli ECRC62 0.67 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA 0.54 BNILDI_04985 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC99 0.66 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC102 0.66 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Rahnella sp. WP5 0.66 EX31_RS11675 Holliday junction branch migration protein RuvA 0.56 EX31_RS15165 tyrosine recombinase XerC 0.69 1
Enterobacter sp. TBS_079 0.66 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA 0.52 MPMX20_04465 Tyrosine recombinase XerC 0.45 2
Escherichia coli ECOR27 0.66 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.66 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA 0.55 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.66 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR38 0.66 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC98 0.66 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA 0.54 EX28DRAFT_4480 tyrosine recombinase XerC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF1640 Holliday junction DNA helicase RuvA 0.55 GFF239 Tyrosine recombinase XerC — —
Klebsiella michiganensis M5al 0.65 BWI76_RS18150 Holliday junction branch migration protein RuvA 0.55 BWI76_RS01210 tyrosine recombinase XerC — —
Shewanella loihica PV-4 0.64 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) — —
Alteromonas macleodii MIT1002 0.63 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA 0.45 MIT1002_00157 Tyrosine recombinase XerC — —
Pantoea sp. MT58 0.63 IAI47_08445 Holliday junction branch migration protein RuvA 0.53 IAI47_18400 tyrosine recombinase XerC 0.24 18
Shewanella oneidensis MR-1 0.63 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.30 50
Shewanella sp. ANA-3 0.62 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Dickeya dadantii 3937 0.61 DDA3937_RS10080 Holliday junction branch migration protein RuvA 0.56 DDA3937_RS19890 tyrosine recombinase XerC — —
Dickeya dianthicola ME23 0.61 DZA65_RS10525 Holliday junction branch migration protein RuvA 0.56 DZA65_RS21090 tyrosine recombinase XerC — —
Dickeya dianthicola 67-19 0.61 HGI48_RS10110 Holliday junction branch migration protein RuvA 0.56 HGI48_RS20045 tyrosine recombinase XerC — —
Pectobacterium carotovorum WPP14 0.61 HER17_RS11845 Holliday junction branch migration protein RuvA 0.54 HER17_RS01350 tyrosine recombinase XerC — —
Erwinia tracheiphila SCR3 0.60 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA 0.53 LU632_RS24135 xerC tyrosine recombinase XerC — —
Shewanella amazonensis SB2B 0.60 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) — —
Serratia liquefaciens MT49 0.60 IAI46_14625 Holliday junction branch migration protein RuvA 0.55 IAI46_00725 tyrosine recombinase XerC — —
Pseudomonas putida KT2440 0.57 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 0.39 PP_5230 Tyrosine recombinase XerC 0.46 5
Pseudomonas stutzeri RCH2 0.56 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.40 Psest_3767 tyrosine recombinase XerC 0.29 5
Pseudomonas sp. S08-1 0.55 OH686_19130 Holliday junction DNA helicase RuvA 0.38 OH686_13785 tyrosine recombinase XerC — —
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.39 Psyr_0185 tyrosine recombinase XerC subunit — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_18020 ATP-dependent DNA helicase RuvA 0.38 AO356_12725 recombinase XerC 0.60 2
Pseudomonas sp. RS175 0.55 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA 0.38 PFR28_04378 Tyrosine recombinase XerC 0.41 3
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_5536 Holliday junction DNA helicase RuvA 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC 0.33 3
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_03585 ATP-dependent DNA helicase RuvA 0.38 AO353_09050 recombinase XerC 0.21 58
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_638 Holliday junction DNA helicase RuvA 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.38 PfGW456L13_842 Tyrosine recombinase XerC 0.56 1
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.83 3
Marinobacter adhaerens HP15 0.52 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA 0.44 HP15_250 site-specific tyrosine recombinase XerC — —
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.24 83
Pseudomonas fluorescens SBW25 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas simiae WCS417 0.52 PS417_22450 ATP-dependent DNA helicase RuvA 0.34 PS417_27595 recombinase XerC low > 88
Rhodanobacter denitrificans MT42 0.48 LRK55_RS04690 Holliday junction branch migration protein RuvA 0.38 LRK55_RS08300 tyrosine recombinase XerC — —
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS04910 Holliday junction branch migration protein RuvA 0.37 LRK54_RS08535 tyrosine recombinase XerC — —
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS10840 Holliday junction branch migration protein RuvA 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.58 14
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC — —
Lysobacter sp. OAE881 0.44 ABIE51_RS05045 Holliday junction branch migration protein RuvA 0.38 ABIE51_RS03035 tyrosine recombinase XerC 0.58 38
Dechlorosoma suillum PS 0.43 Dsui_0485 Holliday junction DNA helicase, RuvA subunit 0.37 Dsui_0651 tyrosine recombinase XerC — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Variovorax sp. SCN45 0.41 GFF2073 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) 0.33 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Castellaniella sp019104865 MT123 0.41 ABCV34_RS07980 Holliday junction branch migration protein RuvA 0.34 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Variovorax sp. OAS795 0.39 ABID97_RS24920 Holliday junction branch migration protein RuvA 0.33 ABID97_RS06150 tyrosine recombinase XerC 0.43 60
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1666 Holliday junction DNA helicase RuvA 0.31 GFF547 Tyrosine recombinase XerC low > 90
Ralstonia solanacearum GMI1000 0.38 RS_RS02490 Holliday junction branch migration protein RuvA 0.34 RS_RS00260 Tyrosine recombinase XerC 1 — —
Paraburkholderia graminis OAS925 0.38 ABIE53_003494 Holliday junction DNA helicase RuvA 0.33 ABIE53_000426 integrase/recombinase XerC — —
Ralstonia solanacearum UW163 0.38 UW163_RS01915 Holliday junction branch migration protein RuvA 0.33 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS07625 Holliday junction branch migration protein RuvA 0.34 ABZR87_RS05065 tyrosine recombinase XerC 0.29 35
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS11670 Holliday junction branch migration protein RuvA 0.33 RALBFv3_RS09675 tyrosine recombinase XerC — —
Paraburkholderia bryophila 376MFSha3.1 0.38 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA 0.34 H281DRAFT_02202 integrase/recombinase XerC — —
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS26795 Holliday junction branch migration protein RuvA 0.35 QEN71_RS00355 tyrosine recombinase XerC — —
Ralstonia solanacearum PSI07 0.37 RPSI07_RS21550 Holliday junction branch migration protein RuvA 0.35 RPSI07_RS23690 tyrosine recombinase XerC — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS02090 Holliday junction DNA helicase RuvA 0.35 HSERO_RS21475 recombinase XerC low > 78
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS02705 Holliday junction DNA helicase RuvA 0.31 RR42_RS00615 recombinase XerC 0.55 1
Acidovorax sp. GW101-3H11 0.37 Ac3H11_4683 Holliday junction DNA helicase RuvA 0.31 Ac3H11_1995 Tyrosine recombinase XerC — —
Rhodopseudomonas palustris CGA009 0.25 TX73_005655 Holliday junction branch migration protein RuvA 0.22 TX73_000945 tyrosine recombinase XerC — —
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA 0.22 Ga0059261_2764 Site-specific recombinase XerD — —
Magnetospirillum magneticum AMB-1 0.23 AMB_RS16255 Holliday junction branch migration protein RuvA 0.25 AMB_RS21485 tyrosine recombinase XerC — —
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS07915 Holliday junction branch migration protein RuvA 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC low > 56
Bacteroides thetaiotaomicron VPI-5482 0.23 BT1978 Holliday junction DNA helicase ruvA (NCBI ptt file) 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) — —
Bosea sp. OAE506 0.23 ABIE41_RS09475 Holliday junction branch migration protein RuvA 0.21 ABIE41_RS07870 tyrosine recombinase XerC — —
Bacteroides ovatus ATCC 8483 0.23 BACOVA_00691 Holliday junction DNA helicase RuvA 0.29 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein — —
Fusobacterium nucleatum SB010 0.23 HUW76_06655 Holliday junction branch migration protein RuvA 0.16 HUW76_06795 tyrosine-type recombinase/integrase low > 35
Rhizobium sp. OAE497 0.22 ABIE40_RS15745 Holliday junction branch migration protein RuvA 0.25 ABIE40_RS17950 tyrosine recombinase XerC low > 107
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS08200 Holliday junction branch migration protein RuvA 0.25 ABI39_RS03835 tyrosine-type recombinase/integrase — —
Agrobacterium fabrum C58 0.22 Atu3723 Holliday junction DNA helicase RuvA 0.24 Atu2628 site-specific recombinase — —
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS00595 Holliday junction branch migration protein RuvA 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase low > 67
Azospirillum brasilense Sp245 0.20 AZOBR_RS09045 Holliday junction DNA helicase RuvA 0.23 AZOBR_RS03965 tyrosine recombinase XerC — —

Not shown: 18 genomes with orthologs for CSW01_09245 only; 0 genomes with orthologs for CSW01_00650 only