Conservation of cofitness between CSW01_09240 and CSW01_00650 in Vibrio cholerae E7946 ATCC 55056

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09240 Holliday junction branch migration DNA helicase RuvB 1.0 CSW01_00650 tyrosine recombinase XerC 0.77 6
Rahnella sp. WP5 0.82 EX31_RS11670 Holliday junction branch migration DNA helicase RuvB 0.56 EX31_RS15165 tyrosine recombinase XerC — —
Erwinia amylovora T8 0.81 OLJFJH_12860 Holliday junction branch migration DNA helicase RuvB 0.54 OLJFJH_06415 tyrosine recombinase XerC — —
Erwinia tracheiphila SCR3 0.81 LU632_RS13410 ruvB Holliday junction branch migration DNA helicase RuvB 0.53 LU632_RS24135 xerC tyrosine recombinase XerC — —
Dickeya dadantii 3937 0.81 DDA3937_RS10085 Holliday junction branch migration DNA helicase RuvB 0.56 DDA3937_RS19890 tyrosine recombinase XerC — —
Dickeya dianthicola 67-19 0.81 HGI48_RS10115 Holliday junction branch migration DNA helicase RuvB 0.56 HGI48_RS20045 tyrosine recombinase XerC — —
Alteromonas macleodii MIT1002 0.81 MIT1002_01333 Holliday junction ATP-dependent DNA helicase RuvB 0.45 MIT1002_00157 Tyrosine recombinase XerC — —
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_22140 ruvB Holliday junction branch migration DNA helicase RuvB 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC — —
Dickeya dianthicola ME23 0.81 DZA65_RS10530 Holliday junction branch migration DNA helicase RuvB 0.56 DZA65_RS21090 tyrosine recombinase XerC — —
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13516_RS08625 ruvB Holliday junction branch migration DNA helicase RuvB 0.53 PagCFBP13516_RS18660 xerC tyrosine recombinase XerC — —
Pectobacterium carotovorum WPP14 0.81 HER17_RS11840 Holliday junction branch migration DNA helicase RuvB 0.54 HER17_RS01350 tyrosine recombinase XerC 0.76 3
Serratia liquefaciens MT49 0.81 IAI46_14620 Holliday junction branch migration DNA helicase RuvB 0.55 IAI46_00725 tyrosine recombinase XerC — —
Pantoea sp. MT58 0.80 IAI47_08450 Holliday junction branch migration DNA helicase RuvB 0.53 IAI47_18400 tyrosine recombinase XerC 0.43 13
Klebsiella michiganensis M5al 0.80 BWI76_RS18145 Holliday junction branch migration DNA helicase RuvB 0.55 BWI76_RS01210 tyrosine recombinase XerC — —
Klebsiella pneumoniae MRSN742743 0.80 GJGHJB_01799 ruvB Holliday junction branch migration DNA helicase RuvB 0.53 GJGHJB_04826 xerC tyrosine recombinase XerC — —
Klebsiella pneumoniae MKP103 0.80 KDGMDA_25410 Holliday junction branch migration DNA helicase RuvB 0.53 KDGMDA_09700 tyrosine recombinase XerC low > 94
Enterobacter sp. TBS_079 0.80 MPMX20_02766 Holliday junction ATP-dependent DNA helicase RuvB 0.52 MPMX20_04465 Tyrosine recombinase XerC 0.38 42
Enterobacter asburiae PDN3 0.79 EX28DRAFT_0696 Holliday junction DNA helicase subunit RuvB 0.54 EX28DRAFT_4480 tyrosine recombinase XerC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF1639 Holliday junction DNA helicase RuvB 0.55 GFF239 Tyrosine recombinase XerC — —
Escherichia coli ECRC100 0.79 OKFHMN_26285 ruvB Holliday junction branch migration DNA helicase RuvB 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC98 0.79 JDDGAC_00860 ruvB Holliday junction branch migration DNA helicase RuvB 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_01868 Holliday junction ATP-dependent DNA helicase RuvB 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC — —
Escherichia coli ECOR27 0.79 NOLOHH_16730 ruvB Holliday junction branch migration DNA helicase RuvB 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.79 MCAODC_19120 ruvB Holliday junction branch migration DNA helicase RuvB 0.55 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia fergusonii Becca 0.79 EFB2_02082 Holliday junction ATP-dependent DNA helicase RuvB 0.54 EFB2_04826 Tyrosine recombinase XerC — —
Escherichia coli BL21 0.79 ECD_01831 ATP-dependent DNA helicase, component of RuvABC resolvasome 0.55 ECD_03687 site-specific tyrosine recombinase — —
Escherichia coli ECRC102 0.79 NIAGMN_01775 ruvB Holliday junction branch migration DNA helicase RuvB 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC99 0.79 KEDOAH_01820 ruvB Holliday junction branch migration DNA helicase RuvB 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli BW25113 0.79 b1860 ruvB Holliday junction DNA helicase B (NCBI) 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.49 5
Escherichia coli ECRC62 0.79 BNILDI_15520 ruvB Holliday junction branch migration DNA helicase RuvB 0.54 BNILDI_04985 xerC tyrosine recombinase XerC low > 75
Escherichia coli Nissle 1917 0.79 ECOLIN_RS10360 Holliday junction branch migration DNA helicase RuvB 0.54 ECOLIN_RS21875 tyrosine recombinase XerC — —
Escherichia coli ECOR38 0.79 HEPCGN_04695 ruvB Holliday junction branch migration DNA helicase RuvB 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC 0.62 14
Shewanella sp. ANA-3 0.77 Shewana3_1957 ruvB Holliday junction DNA helicase RuvB (RefSeq) 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) — —
Kangiella aquimarina DSM 16071 0.77 B158DRAFT_1136 Holliday junction DNA helicase subunit RuvB 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.77 11
Shewanella oneidensis MR-1 0.77 SO2429 ruvB Holliday junction DNA helicase RuvB (NCBI ptt file) 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.39 12
Shewanella amazonensis SB2B 0.76 Sama_1839 ruvB Holliday junction DNA helicase RuvB (RefSeq) 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) 0.33 28
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_1410 Holliday junction DNA helicase RuvB 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_1410 Holliday junction DNA helicase RuvB 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.36 61
Shewanella loihica PV-4 0.75 Shew_2075 ruvB Holliday junction DNA helicase B (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Pseudomonas sp. DMC3 0.75 GFF5184 Holliday junction ATP-dependent DNA helicase RuvB 0.38 GFF370 Tyrosine recombinase XerC low > 89
Marinobacter adhaerens HP15 0.75 HP15_2040 Holliday junction ATP-dependent DNA helicase RuvB 0.44 HP15_250 site-specific tyrosine recombinase XerC — —
Pseudomonas lactucae CFBP13502 0.75 GEMAOFIL_04641 Holliday junction ATP-dependent DNA helicase RuvB 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC low > 96
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_1853 Holliday junction DNA helicase RuvB 0.38 PfGW456L13_842 Tyrosine recombinase XerC 0.28 86
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_637 Holliday junction DNA helicase RuvB 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC — —
Pseudomonas sp. RS175 0.75 PFR28_03412 Holliday junction ATP-dependent DNA helicase RuvB 0.38 PFR28_04378 Tyrosine recombinase XerC 0.47 4
Pseudomonas fluorescens SBW25 0.75 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.49 82
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.32 63
Pseudomonas protegens RBAN4 0.75 FABNJH_24090 ruvB Holliday junction branch migration DNA helicase RuvB 0.39 FABNJH_30340 xerC tyrosine recombinase XerC — —
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_03580 ATP-dependent DNA helicase RuvB 0.38 AO353_09050 recombinase XerC 0.32 22
Pseudomonas simiae WCS417 0.75 PS417_22445 ATP-dependent DNA helicase RuvB 0.34 PS417_27595 recombinase XerC 0.43 55
Pseudomonas aeruginosa MRSN321 0.75 PFGADD_04158 ruvB Holliday junction branch migration DNA helicase RuvB 0.40 PFGADD_05531 xerC tyrosine recombinase XerC 0.32 65
Pseudomonas aeruginosa PUPa3 0.75 NPBIFN_04217 ruvB Holliday junction branch migration DNA helicase RuvB 0.40 NPBIFN_05607 xerC tyrosine recombinase XerC 0.40 6
Pseudomonas aeruginosa PA14 0.75 IKLFDK_04375 Holliday junction branch migration DNA helicase RuvB 0.40 IKLFDK_27050 tyrosine recombinase XerC — —
Pseudomonas sp. S08-1 0.75 OH686_19135 Holliday junction DNA helicase RuvB 0.38 OH686_13785 tyrosine recombinase XerC low > 80
Pseudomonas orientalis W4I3 0.75 QF045_RS24610 Holliday junction branch migration DNA helicase RuvB 0.37 QF045_RS01960 tyrosine recombinase XerC low > 93
Methylophilus sp. DMC18 0.74 GFF2327 Holliday junction ATP-dependent DNA helicase RuvB 0.40 GFF1535 Tyrosine recombinase XerC low > 43
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_5537 Holliday junction DNA helicase RuvB 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC — —
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_18025 ATP-dependent DNA helicase RuvB 0.38 AO356_12725 recombinase XerC 0.65 1
Pseudomonas stutzeri RCH2 0.74 Psest_1497 Holliday junction DNA helicase, RuvB subunit 0.40 Psest_3767 tyrosine recombinase XerC — —
Dechlorosoma suillum PS 0.74 Dsui_0484 Holliday junction DNA helicase, RuvB subunit 0.37 Dsui_0651 tyrosine recombinase XerC — —
Pseudomonas segetis P6 0.74 ACVTMO_RS08360 ruvB Holliday junction branch migration DNA helicase RuvB 0.40 ACVTMO_RS22525 xerC tyrosine recombinase XerC — —
Pseudomonas sp. SVBP6 0.74 COO64_RS20100 ruvB Holliday junction branch migration DNA helicase RuvB 0.39 COO64_RS01270 xerC tyrosine recombinase XerC 0.30 60
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS02700 ATP-dependent DNA helicase RuvB 0.31 RR42_RS00615 recombinase XerC — —
Pseudomonas sp. BP01 0.73 JOY50_RS01815 ruvB Holliday junction branch migration DNA helicase RuvB 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC low > 84
Pseudomonas putida KT2440 0.73 PP_1217 Holliday junction ATP-dependent DNA helicase RuvB 0.39 PP_5230 Tyrosine recombinase XerC 0.54 5
Paraburkholderia sabiae LMG 24235 0.73 QEN71_RS26800 Holliday junction branch migration DNA helicase RuvB 0.35 QEN71_RS00355 tyrosine recombinase XerC — —
Paraburkholderia bryophila 376MFSha3.1 0.72 H281DRAFT_04255 Holliday junction DNA helicase subunit RuvB 0.34 H281DRAFT_02202 integrase/recombinase XerC — —
Burkholderia phytofirmans PsJN 0.72 BPHYT_RS16620 holliday junction ATP-dependent DNA helicase RuvB 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Paraburkholderia graminis OAS925 0.72 ABIE53_003495 Holliday junction DNA helicase RuvB 0.33 ABIE53_000426 integrase/recombinase XerC — —
Ralstonia sp. UNC404CL21Col 0.71 ABZR87_RS07620 Holliday junction branch migration DNA helicase RuvB 0.34 ABZR87_RS05065 tyrosine recombinase XerC 0.36 61
Ralstonia solanacearum GMI1000 0.71 RS_RS02485 Holliday junction branch migration DNA helicase RuvB 0.34 RS_RS00260 Tyrosine recombinase XerC 1 — —
Ralstonia solanacearum PSI07 0.71 RPSI07_RS21555 Holliday junction branch migration DNA helicase RuvB 0.35 RPSI07_RS23690 tyrosine recombinase XerC — —
Ralstonia solanacearum IBSBF1503 0.71 RALBFv3_RS11665 Holliday junction branch migration DNA helicase RuvB 0.33 RALBFv3_RS09675 tyrosine recombinase XerC — —
Ralstonia solanacearum UW163 0.71 UW163_RS01920 Holliday junction branch migration DNA helicase RuvB 0.33 UW163_RS03905 tyrosine recombinase XerC — —
Castellaniella sp019104865 MT123 0.71 ABCV34_RS07990 Holliday junction branch migration DNA helicase RuvB 0.34 ABCV34_RS13455 tyrosine recombinase XerC — —
Herbaspirillum seropedicae SmR1 0.71 HSERO_RS02095 Holliday junction DNA helicase RuvB 0.35 HSERO_RS21475 recombinase XerC low > 78
Acidovorax sp. GW101-3H11 0.70 Ac3H11_4685 Holliday junction DNA helicase RuvB 0.31 Ac3H11_1995 Tyrosine recombinase XerC — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.70 GFF1665 Holliday junction DNA helicase RuvB 0.31 GFF547 Tyrosine recombinase XerC — —
Variovorax sp. SCN45 0.70 GFF2090 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) 0.33 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Variovorax sp. OAS795 0.69 ABID97_RS24875 Holliday junction branch migration DNA helicase RuvB 0.33 ABID97_RS06150 tyrosine recombinase XerC — —
Lysobacter sp. OAE881 0.68 ABIE51_RS05055 Holliday junction branch migration DNA helicase RuvB 0.38 ABIE51_RS03035 tyrosine recombinase XerC — —
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.1439.1 Holliday junction DNA helicase RuvB 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Rhodanobacter denitrificans MT42 0.67 LRK55_RS04680 Holliday junction branch migration DNA helicase RuvB 0.38 LRK55_RS08300 tyrosine recombinase XerC — —
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS04900 Holliday junction branch migration DNA helicase RuvB 0.37 LRK54_RS08535 tyrosine recombinase XerC — —
Rhodanobacter sp000427505 FW510-R12 0.67 LRK53_RS05130 Holliday junction branch migration DNA helicase RuvB 0.37 LRK53_RS02315 tyrosine recombinase XerC — —
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS10830 Holliday junction branch migration DNA helicase RuvB 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.56 8
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_01850 ruvB Holliday junction branch migration DNA helicase RuvB 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC — —
Bacteroides stercoris CC31F 0.57 HMPREF1181_RS02130 Holliday junction branch migration DNA helicase RuvB 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC low > 56
Phocaeicola vulgatus CL09T03C04 0.57 HMPREF1058_RS11890 Holliday junction branch migration DNA helicase RuvB 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase low > 67
Bacteroides ovatus ATCC 8483 0.57 BACOVA_00895 Holliday junction DNA helicase RuvB 0.29 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein — —
Bacteroides thetaiotaomicron VPI-5482 0.57 BT3285 Holliday junction DNA helicase ruvB (NCBI ptt file) 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) — —

Not shown: 33 genomes with orthologs for CSW01_09240 only; 0 genomes with orthologs for CSW01_00650 only